ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28b05 |
|---|---|
| Clone Library Name | barley_pub |
>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1108 Score = 81.3 bits (199), Expect = 1e-15 Identities = 33/44 (75%), Positives = 39/44 (88%) Frame = +1 Query: 355 ADDENPEDFIDPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWE 486 A +ENPEDF+DPETP G++K L+ MAKQYSP+TVEKSWYAWWE Sbjct: 111 ASEENPEDFVDPETPLGERKRLSSQMAKQYSPATVEKSWYAWWE 154
>SYV_FUGRU (P49696) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1217 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +1 Query: 385 DPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWE 486 D TPSG+KK + + YSP VE +WY WWE Sbjct: 230 DIPTPSGEKKDVVSPLPDSYSPQYVEAAWYPWWE 263
>SYV_MOUSE (Q9Z1Q9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1263 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +1 Query: 385 DPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWE 486 D TP G+KK ++ M YSP VE +WY WWE Sbjct: 280 DLPTPPGEKKDVSGAMPDSYSPQYVEAAWYPWWE 313
>SYV_RAT (Q04462) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 1264 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +1 Query: 385 DPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWE 486 D TP G+KK ++ M YSP VE +WY WWE Sbjct: 281 DLPTPPGEKKDVSGTMPDSYSPQYVEAAWYPWWE 314
>SYV_HUMAN (P26640) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) (Protein G7a) Length = 1264 Score = 43.1 bits (100), Expect = 4e-04 Identities = 17/34 (50%), Positives = 21/34 (61%) Frame = +1 Query: 385 DPETPSGQKKSLAPXMAKQYSPSTVEKSWYAWWE 486 D TP G+KK ++ M YSP VE +WY WWE Sbjct: 281 DLPTPPGEKKDVSGPMPDSYSPRYVEAAWYPWWE 314
>SYV_YEAST (P07806) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1104 Score = 38.1 bits (87), Expect = 0.013 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = +1 Query: 376 DFIDPETPSGQKK---SLAPXMAKQYSPSTVEKSWYAWW 483 +FID P G+KK SL K Y+P+ VE SWY WW Sbjct: 124 EFIDKTVP-GEKKILVSLDDPALKAYNPANVESSWYDWW 161
>SYV_NEUCR (P28350) Valyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 1093 Score = 37.0 bits (84), Expect = 0.028 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Frame = +1 Query: 385 DPETPSGQKK---SLAPXMAKQYSPSTVEKSWYAWWE 486 + TP+G+KK S Y+PS VE +WY WWE Sbjct: 118 EDSTPAGEKKVIQSFEHPHFSAYNPSAVEAAWYQWWE 154
>SYV_SCHPO (O75005) Probable valyl-tRNA synthetase, mitochondrial precursor| (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS) Length = 980 Score = 35.0 bits (79), Expect = 0.11 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%) Frame = +1 Query: 376 DFIDPETPSGQKKSL----APXMAKQYSPSTVEKSWYAWW 483 ++++ TP G+KK L +P + K Y+P VE +WY WW Sbjct: 73 EYVEKTTP-GEKKVLQDLDSPAL-KSYNPKAVESAWYDWW 110
>SYV_DEHSC (Q3ZZG9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 31.2 bits (69), Expect = 1.5 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +1 Query: 424 PXMAKQYSPSTVEKSWYAWW 483 P MAK Y + VEK WY +W Sbjct: 8 PEMAKAYEAAEVEKKWYQYW 27
>SYV_DEHE1 (Q3Z9C5) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 31.2 bits (69), Expect = 1.5 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +1 Query: 424 PXMAKQYSPSTVEKSWYAWW 483 P MAK Y + VEK WY +W Sbjct: 8 PEMAKAYEAAEVEKKWYQYW 27
>SYV_THIDA (Q3SL86) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 912 Score = 30.8 bits (68), Expect = 2.0 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWWE 486 +AK + P+ +EK WYA WE Sbjct: 3 LAKSFEPAEIEKRWYARWE 21
>SYV_GEOSL (Q74BJ6) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 887 Score = 30.0 bits (66), Expect = 3.4 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWWE 486 +AK Y P+ VE+ WY WE Sbjct: 6 LAKVYEPTAVERKWYETWE 24
>SYV_BACSK (Q5WEQ4) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 880 Score = 28.9 bits (63), Expect = 7.6 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWW 483 M +Y PS EK WY +W Sbjct: 7 MPTKYDPSATEKKWYTYW 24
>SYV_CARHZ (Q3AF87) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 878 Score = 28.9 bits (63), Expect = 7.6 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 442 YSPSTVEKSWYAWWE 486 YSP VE+ WY +WE Sbjct: 9 YSPQEVERKWYKYWE 23
>SYV_PSEAE (Q9HXH0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 950 Score = 28.5 bits (62), Expect = 9.9 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWWE 486 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYETWE 19
>SYV_FUSNN (Q8RHK3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 887 Score = 28.5 bits (62), Expect = 9.9 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +1 Query: 436 KQYSPSTVEKSWYAWWE 486 K YSP+ +E+ WY WE Sbjct: 6 KNYSPNEIEEKWYKIWE 22
>SYV_PSEU2 (Q4ZXI0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 28.5 bits (62), Expect = 9.9 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWWE 486 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYQTWE 19
>SYV_PSESM (Q887M3) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 28.5 bits (62), Expect = 9.9 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWWE 486 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYQTWE 19
>SYV_PSEF5 (Q4KHT9) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 28.5 bits (62), Expect = 9.9 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWWE 486 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYQTWE 19
>SYV_PSE14 (Q48MF2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 948 Score = 28.5 bits (62), Expect = 9.9 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWWE 486 M K Y P +E SWY WE Sbjct: 1 MDKTYQPHAIETSWYQTWE 19
>SYV_CHRVO (Q7NUM8) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 939 Score = 28.5 bits (62), Expect = 9.9 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +1 Query: 430 MAKQYSPSTVEKSWYAWWE 486 +AK Y P +E+ WY WE Sbjct: 4 LAKSYEPGDLERRWYQHWE 22 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.309 0.124 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,050,937 Number of Sequences: 219361 Number of extensions: 428832 Number of successful extensions: 1091 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1079 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1091 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
