ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28b03 |
|---|---|
| Clone Library Name | barley_pub |
>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 869 Score = 35.4 bits (80), Expect = 0.084 Identities = 16/42 (38%), Positives = 26/42 (61%) Frame = +1 Query: 337 PKEIFLKDYKKPDYLFDTVDLEFQLGDEKTIVTSNIAVSPRH 462 P+ + DY+ PDY +DL F L +KT+VT+ ++ + RH Sbjct: 4 PQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTA-VSQAVRH 44
>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide| hydrolase) Length = 869 Score = 34.7 bits (78), Expect = 0.14 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +1 Query: 334 LPKEIFLKDYKKPDYLFDTVDLEFQLGDEKTIVTS 438 L K + KDYK+PD+ + L+FQL + T+VT+ Sbjct: 2 LAKAKYRKDYKQPDFTVTDIYLDFQLDPKHTVVTA 36
>MYLK2_RAT (P20689) Myosin light chain kinase 2, skeletal/cardiac muscle (EC| 2.7.11.18) (MLCK2) Length = 609 Score = 32.0 bits (71), Expect = 0.93 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Frame = +1 Query: 43 PGAADPLRRSSPTRRRGVP--PPPSTKYQRLPFSSSKRGSPGNKDSG 177 PGA DP + P + P P P K P S+S +G G D G Sbjct: 53 PGAPDPKKNPDPPSLKKTPEAPGPEKKGDSAPASASNQGPSGEGDGG 99
>HLDE_STRCO (Q9Z5B5) Bifunctional protein hldE [Includes: D-beta-D-heptose| 7-phosphate kinase (EC 2.7.1.-) (D-beta-D-heptose 7-phosphotransferase); D-beta-D-heptose 1-phosphate adenosyltransferase (EC 2.7.7.-)] Length = 463 Score = 32.0 bits (71), Expect = 0.93 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = +2 Query: 11 GASLSPYLS--DDQEQRIHFGDPARPGGAAFLLLLRPSIKDCLSPLQRGVPQGTRTLA 178 GA+L+ YL+ D +E + G P G A LL P +K PL VP+ TR LA Sbjct: 53 GAALAAYLAARDGREVTLIAGVGEDPAGLALRELLAPWLKLIPLPLTGTVPEKTRVLA 110
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 58 PLRRSSPTRR---RGVPPPPSTKYQRLPFSSSKRGSPGNKDSGYRANLTKEGS 207 P RR SP RR R +PPPP + R P +R S S ++ ++ S Sbjct: 317 PRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRS 369
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 58 PLRRSSPTRR---RGVPPPPSTKYQRLPFSSSKRGSPGNKDSGYRANLTKEGS 207 P RR SP RR R +PPPP + R P +R S S ++ ++ S Sbjct: 313 PRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRS 365
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.4 bits (67), Expect = 2.7 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 58 PLRRSSPTRR---RGVPPPPSTKYQRLPFSSSKRGSPGNKDSGYRANLTKEGS 207 P RR SP RR R +PPPP + R P +R S S ++ ++ S Sbjct: 317 PRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRS 369
>SH3G3_HUMAN (Q99963) SH3-containing GRB2-like protein 3 (SH3 domain protein 2C)| (EEN-B2) Length = 347 Score = 30.0 bits (66), Expect = 3.5 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +3 Query: 51 SGSTSEIQPDPAARRSSSSFDQVSKIAFLLFKEGFPREQGL 173 S +T +QP+PA R + VSKI + G+P+ +GL Sbjct: 52 SKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGL 92
>SH3G1_RAT (O35964) SH3-containing GRB2-like protein 1 (SH3 domain protein 2B)| (SH3p8) Length = 368 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 69 IQPDPAARRSSSSFDQVSKIAFLLFKEGFPREQGL 173 +QP+PA+R + + VSKI + G+P+ +GL Sbjct: 58 LQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGL 92
>SH3G1_MOUSE (Q62419) SH3-containing GRB2-like protein 1 (SH3 domain protein 2B)| (SH3p8) Length = 368 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 69 IQPDPAARRSSSSFDQVSKIAFLLFKEGFPREQGL 173 +QP+PA+R + + VSKI + G+P+ +GL Sbjct: 58 LQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGL 92
>SH3G1_HUMAN (Q99961) SH3-containing GRB2-like protein 1 (SH3 domain protein 2B)| (Extra eleven-nineteen leukemia fusion gene) (EEN) (EEN fusion partner of MLL) Length = 368 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 69 IQPDPAARRSSSSFDQVSKIAFLLFKEGFPREQGL 173 +QP+PA+R + + VSKI + G+P+ +GL Sbjct: 58 LQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGL 92
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 58 PLRRSSPTRR---RGVPPPPSTKYQRLPFSSSKRGSPGNKDSGYRANLTKEGS 207 P RR SP RR R +PPPP + R P +R S S ++ ++ S Sbjct: 315 PRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRS 367
>SH3G3_MOUSE (Q62421) SH3-containing GRB2-like protein 3 (SH3 domain protein 2C)| (SH3p13) Length = 347 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 51 SGSTSEIQPDPAARRSSSSFDQVSKIAFLLFKEGFPREQGL 173 S +T +QP+PA R + VSK+ + G+P+ +GL Sbjct: 52 SKATEYLQPNPAYRAKLGMLNTVSKLRGQVKATGYPQTEGL 92
>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)| Length = 1085 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +1 Query: 337 PKEIFLKDYKKPDYLFDTVDLEFQLGDEKTIVTS 438 PK + KDYK ++ + V L + D +TIV S Sbjct: 196 PKIHYRKDYKPSGFIINNVTLNINIHDNETIVRS 229
>TAU_RAT (P19332) Microtubule-associated protein tau (Neurofibrillary tangle| protein) (Paired helical filament-tau) (PHF-tau) Length = 751 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = +1 Query: 43 PGAADPL-RRSSPTRRRGVPPPPSTKYQRLPFSSSKRGSPGNKDSGYRANLTKEGS 207 PG++DPL + SSP V P P+T + + + + GSPG K + K G+ Sbjct: 408 PGSSDPLIKPSSPA----VCPEPATSPKYVSSVTPRNGSPGTKQMKLKGADGKTGA 459
>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle| attachment abnormal protein 3) Length = 3767 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +1 Query: 373 DYLFDTVDLEFQLGDEKTIVTSNIAVSPRHEGTS 474 +Y + D+E +GD++TIVT N + P G S Sbjct: 3715 EYCSEEEDVEHSVGDKRTIVTKNHSYEPFVNGES 3748
>HMGN2_RAT (P18437) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +1 Query: 55 DPLRRSSPTRRRGVPPPPSTKYQRLPFSSSK---RGSPGNKDSGYRAN 189 +P RRS+ + PP P K ++ P + +G G D+G AN Sbjct: 19 EPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDAN 66
>HMGN2_PONPY (Q5RAA0) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +1 Query: 55 DPLRRSSPTRRRGVPPPPSTKYQRLPFSSSKRGSPGNKDSGYRANLTKEGSH 210 +P RRS+ + PP P K ++ P +K+G K +A+ KEG++ Sbjct: 19 EPQRRSARLSAKPAPPKPEPKPKKAP---AKKGEKVPKGKKGKADADKEGNN 67
>HMGN2_MOUSE (P09602) Nonhistone chromosomal protein HMG-17 (High-mobility group| nucleosome-binding domain-containing protein 2) Length = 89 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Frame = +1 Query: 55 DPLRRSSPTRRRGVPPPPSTKYQRLPFSSSK---RGSPGNKDSGYRAN 189 +P RRS+ + PP P K ++ P + +G G D+G AN Sbjct: 19 EPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDAN 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,139,594 Number of Sequences: 219361 Number of extensions: 1463408 Number of successful extensions: 5142 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4750 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5124 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
