ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMOT_HUMAN (Q4VCS5) Angiomotin 32 0.90
2ZN341_HUMAN (Q9BYN7) Zinc finger protein 341 32 1.2
3FIBP_ADE02 (P03275) Fiber protein (pIV) 31 1.5
4RLMB_PSEAE (Q9HUM8) 23S rRNA (guanosine-2'-O-)-methyltransferase... 29 7.6
5PPNK_NITMU (Q2Y6B0) Probable inorganic polyphosphate/ATP-NAD kin... 29 7.6
6PATL2_ARATH (Q56ZI2) Patellin-2 29 7.6

>AMOT_HUMAN (Q4VCS5) Angiomotin|
          Length = 1084

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = -1

Query: 189  APVAPLTACTGAVEVAPVAPLTARTGALEVAPVAQAQVAGRPRASRIACS 40
            A VAP  A   AV+VAP AP      AL   P   A  A  P  ++   S
Sbjct: 957  AAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTS 1006



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>ZN341_HUMAN (Q9BYN7) Zinc finger protein 341|
          Length = 854

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 186 PVAPLTACTGAVEVAPVAPLTARTGALEVAPVAQAQVAGRPRASRIACS 40
           P AP+T+ TG       +P T +T   + A     + AG+P+A ++ CS
Sbjct: 278 PAAPMTSATGGTVATFDSPATLKTRRAKGAR-GLPEAAGKPKAQKLKCS 325



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>FIBP_ADE02 (P03275) Fiber protein (pIV)|
          Length = 582

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 180 APLTACTGAVEVAPVAPLTARTGALEVAPVAQAQV 76
           APLT  +GA+ VA  APL   +GAL V   A   V
Sbjct: 103 APLTITSGALTVATTAPLIVTSGALSVQSQAPLTV 137



 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 192 VAPVAPLTACTGAVEVAPVAPLTARTGALEVA 97
           VA  APL   +GA+ V   APLT +   L +A
Sbjct: 114 VATTAPLIVTSGALSVQSQAPLTVQDSKLSIA 145



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>RLMB_PSEAE (Q9HUM8) 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (EC|
           2.1.1.-) (23S rRNA Gm2251 2'-O-methyltransferase)
          Length = 248

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 375 RLYGPHQVESAALEQHHPRRPRAAEWQTARHD 470
           ++YG H VE  AL +HHP+R +       RHD
Sbjct: 6   KVYGVHAVE--ALLRHHPKRVKQLWLAEGRHD 35



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>PPNK_NITMU (Q2Y6B0) Probable inorganic polyphosphate/ATP-NAD kinase (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase)
          Length = 294

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -1

Query: 153 VEVAPVAPLTARTGALEVAPVAQAQVA-GRPRASRIACSRHTHAAREENEKL 1
           V + PV+P T     + V P A  ++   R   +R+    H+H   EEN+K+
Sbjct: 206 VALVPVSPHTLSNRPIVVGPDAAVEILMQRTAVARVHFDSHSHFDLEENDKV 257



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>PATL2_ARATH (Q56ZI2) Patellin-2|
          Length = 683

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -1

Query: 195 EVAPVAPLTACTGAVEVAPVAPLTARTGALE-VAPVAQAQVA 73
           E  P AP+ A T   E+ P AP+T  T   E V PV     A
Sbjct: 198 ETKPAAPVVAETKKEEILPAAPVTTETKVEEKVVPVETTPAA 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,609,067
Number of Sequences: 219361
Number of extensions: 476321
Number of successful extensions: 1855
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1853
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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