ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_746906.1| Aspergillus fumigatus Af293 hypothetical protei... 44 0.42
2emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 44 0.42
3gb|AY183411.1| Phytophthora sojae elicitin protein (SOJ3) mRNA, ... 44 0.42
4gb|DQ229243.1| Phytophthora sojae elicitin-like protein SOJ3D ge... 44 0.42
5emb|AL627422.12| Human DNA sequence from clone XXyac-21IF11 on c... 42 1.7
6emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.7
7dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.7
8gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.7
9ref|XM_417875.1| PREDICTED: Gallus gallus similar to Sorting nex... 40 6.6
10gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence 40 6.6
11gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.6
12gb|AY191612.1| Pan troglodytes Rho-associated protein kinase (RO... 40 6.6
13gb|BC098889.1| Danio rerio telomeric repeat binding factor a, mR... 40 6.6
14gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.6
15emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.6
16emb|BX321864.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 6.6
17emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete ... 40 6.6
18emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
19emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4,... 40 6.6
20emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 6.6
21emb|AJ307640.1|MOB307640 Mycobacterium obuense partial hsp65 gen... 40 6.6
22gb|BC096857.1| Danio rerio telomeric repeat binding factor a, mR... 40 6.6
23gb|AC183297.3| Pan troglodytes BAC clone CH251-300E12 from chrom... 40 6.6
24gb|AE005766.1| Caulobacter crescentus CB15 section 92 of 359 of ... 40 6.6
25gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 6.6
26gb|CP000249.1| Frankia sp. CcI3, complete genome 40 6.6
27gb|AF072135.1|AF072135 Caulobacter crescentus hook associated pr... 40 6.6
28gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.6
29dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
30dbj|D78345.1| Homo sapiens DNA, gamma gene loci of immunoglobuli... 40 6.6
31gb|AF547863.1| Mycobacterium obuense strain CIP 106803 65 kDa he... 40 6.6
32dbj|AB126344.1| Haloarcula vallismortis ndk gene for nucleoside ... 40 6.6
33dbj|AB121065.1| Haloarcula vallismortis ndk gene for nucleoside ... 40 6.6
34emb|AL928742.3|CNS08CBF Human chromosome 14 DNA sequence BAC R-7... 40 6.6
35emb|AL122127.6|CNS01DT2 Human chromosome 14 DNA sequence BAC R-4... 40 6.6
36ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) ... 40 6.6
37gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 6.6
38emb|AL121820.4|CNS01DSM Human chromosome 14 DNA sequence BAC C-2... 40 6.6
39emb|Z17370.1|HSIGG1CP H.sapiens germline immunoglobulin gamma1 c... 40 6.6
40gb|AY048670.1| Streptomyces globisporus enediyne antitumor antib... 40 6.6
41emb|AL928761.2|CNS08CBY Human chromosome 14 DNA sequence Partial... 40 6.6
42dbj|AP000845.4| Homo sapiens genomic DNA, chromosome 18p clone:R... 40 6.6

>ref|XM_746906.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g08270)
           partial mRNA
          Length = 1005

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 125 gtgagcggggcgacaggcgcga 146
           ||||||||||||||||||||||
Sbjct: 352 gtgagcggggcgacaggcgcga 331



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 170 gtgagcggggcgacaggcgcga 191
           ||||||||||||||||||||||
Sbjct: 352 gtgagcggggcgacaggcgcga 331



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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 353  gcggtgaccttggcgacggccg 374
            ||||||||||||||||||||||
Sbjct: 3135 gcggtgaccttggcgacggccg 3156



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>gb|AY183411.1| Phytophthora sojae elicitin protein (SOJ3) mRNA, complete cds
          Length = 814

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 225 cgacggcgacggccgcgacctcgacg 250
           |||||||| |||||||||||||||||
Sbjct: 557 cgacggcgtcggccgcgacctcgacg 582



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>gb|DQ229243.1| Phytophthora sojae elicitin-like protein SOJ3D gene, complete cds
          Length = 633

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 225 cgacggcgacggccgcgacctcgacg 250
           |||||||| |||||||||||||||||
Sbjct: 488 cgacggcgtcggccgcgacctcgacg 513



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>emb|AL627422.12| Human DNA sequence from clone XXyac-21IF11 on chromosome 6 Contains the
             5' end of a novel gene, a novel gene, a SNARE Vti1a-beta
             protein pseudogene (LOC143187) and a CpG island, complete
             sequence
          Length = 115866

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 406   cagcactggaacagcaccatc 426
             |||||||||||||||||||||
Sbjct: 70806 cagcactggaacagcaccatc 70786



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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 213     cggcgacctgtgcgacggcgacggc 237
               |||||||||| ||||||||||||||
Sbjct: 1863930 cggcgacctgcgcgacggcgacggc 1863906



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 141     gcgcgacctcgacggcgcccg 161
               |||||||||||||||||||||
Sbjct: 1646380 gcgcgacctcgacggcgcccg 1646400



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 213     cggcgacctgtgcgacggcgacggc 237
               |||||||||| ||||||||||||||
Sbjct: 1813293 cggcgacctgcgcgacggcgacggc 1813269



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>ref|XM_417875.1| PREDICTED: Gallus gallus similar to Sorting nexin 19 (LOC419734),
           mRNA
          Length = 2771

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 294 cggcgcacgtgcgcgaggcg 313
           ||||||||||||||||||||
Sbjct: 62  cggcgcacgtgcgcgaggcg 81



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>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gcgacggcgacggccgcgac 243
             ||||||||||||||||||||
Sbjct: 60454 gcgacggcgacggccgcgac 60473



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 224     gcgacggcgacggccgcgacctcg 247
               ||||||||||||| ||||||||||
Sbjct: 1653221 gcgacggcgacgggcgcgacctcg 1653198



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>gb|AY191612.1| Pan troglodytes Rho-associated protein kinase (ROCK1) gene, partial cds;
              ubiquitin specific protease 14 (USP14) gene, complete cds;
              and THO complex 1 (THOC1) gene, partial cds
          Length = 186959

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      tttttcgttttcctctctag 23
              ||||||||||||||||||||
Sbjct: 141238 tttttcgttttcctctctag 141257



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>gb|BC098889.1| Danio rerio telomeric repeat binding factor a, mRNA (cDNA clone
            MGC:114011 IMAGE:2601225), complete cds
          Length = 1910

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   gtgtgtgtggcggctgcagg 47
            ||||||||||||||||||||
Sbjct: 1361 gtgtgtgtggcggctgcagg 1342



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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 188     gcgacctcgacagcgcccgt 207
               ||||||||||||||||||||
Sbjct: 1307899 gcgacctcgacagcgcccgt 1307918



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 224     gcgacggcgacggccgcgacctcg 247
               ||||||||||||| ||||||||||
Sbjct: 2988371 gcgacggcgacgggcgcgacctcg 2988348



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>emb|BX321864.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 9/10
          Length = 326050

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 467    tgatttgcaaggacttgtga 486
              ||||||||||||||||||||
Sbjct: 272170 tgatttgcaaggacttgtga 272189



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>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   cgacggcgacggccgcgacc 244
             ||||||||||||||||||||
Sbjct: 14723 cgacggcgacggccgcgacc 14742



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>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
            complete sequence
          Length = 147806

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 222  gtgcgacggcgacggccgcg 241
            ||||||||||||||||||||
Sbjct: 5654 gtgcgacggcgacggccgcg 5673



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>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17,
              complete sequence
          Length = 167269

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    gtgcgacggcgacggccgcg 241
              ||||||||||||||||||||
Sbjct: 161282 gtgcgacggcgacggccgcg 161301



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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     ccggcgcgacctcgagagcg 112
              ||||||||||||||||||||
Sbjct: 139665 ccggcgcgacctcgagagcg 139684



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>emb|AJ307640.1|MOB307640 Mycobacterium obuense partial hsp65 gene for 65 kDa heat shock
           protein
          Length = 408

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 354 cggtgaccttggcgacggcc 373
           ||||||||||||||||||||
Sbjct: 208 cggtgaccttggcgacggcc 189



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>gb|BC096857.1| Danio rerio telomeric repeat binding factor a, mRNA (cDNA clone
            MGC:111909 IMAGE:7221992), complete cds
          Length = 1876

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   gtgtgtgtggcggctgcagg 47
            ||||||||||||||||||||
Sbjct: 1343 gtgtgtgtggcggctgcagg 1324



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>gb|AC183297.3| Pan troglodytes BAC clone CH251-300E12 from chromosome 18, complete
             sequence
          Length = 173095

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     tttttcgttttcctctctag 23
             ||||||||||||||||||||
Sbjct: 76152 tttttcgttttcctctctag 76171



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>gb|AE005766.1| Caulobacter crescentus CB15 section 92 of 359 of the complete genome
          Length = 10091

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   ggcgaccggcgcgacctcga 107
            ||||||||||||||||||||
Sbjct: 8079 ggcgaccggcgcgacctcga 8060



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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 231     cgacggccgcgacctcgacgaccc 254
               |||||||||||||||| |||||||
Sbjct: 3541589 cgacggccgcgacctcaacgaccc 3541612



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 222     gtgcgacggcgacggccgcgacctcgac 249
               |||||||||||||||||||  |||||||
Sbjct: 5355478 gtgcgacggcgacggccgcctcctcgac 5355505



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>gb|AF072135.1|AF072135 Caulobacter crescentus hook associated protein I homolog (flaN),
            flagellar operon, complete sequence and II.1 protein
            (II.1) genes, complete cds
          Length = 6943

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 88   ggcgaccggcgcgacctcga 107
            ||||||||||||||||||||
Sbjct: 2389 ggcgaccggcgcgacctcga 2370



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 231     cgacggccgcgacctcgacg 250
               ||||||||||||||||||||
Sbjct: 1500447 cgacggccgcgacctcgacg 1500466



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 222      gtgcgacggcgacggccgcg 241
                ||||||||||||||||||||
Sbjct: 27998429 gtgcgacggcgacggccgcg 27998448



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>dbj|D78345.1| Homo sapiens DNA, gamma gene loci of immunoglobulin heavy chains
          Length = 21013

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    gtgtgtgtggcggctgcagg 47
             ||||||||||||||||||||
Sbjct: 11385 gtgtgtgtggcggctgcagg 11366



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>gb|AF547863.1| Mycobacterium obuense strain CIP 106803 65 kDa heat shock protein
           (hsp65) gene, partial cds
          Length = 424

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 354 cggtgaccttggcgacggcc 373
           ||||||||||||||||||||
Sbjct: 231 cggtgaccttggcgacggcc 212



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>dbj|AB126344.1| Haloarcula vallismortis ndk gene for nucleoside diphosphate kinase,
           partial cds
          Length = 590

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 419 gcaccatccgcggcgaccacgggc 442
           ||||||||||||||||| ||||||
Sbjct: 293 gcaccatccgcggcgactacgggc 316



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>dbj|AB121065.1| Haloarcula vallismortis ndk gene for nucleoside diphosphate kinase,
           partial cds
          Length = 423

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 419 gcaccatccgcggcgaccacgggc 442
           ||||||||||||||||| ||||||
Sbjct: 293 gcaccatccgcggcgactacgggc 316



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>emb|AL928742.3|CNS08CBF Human chromosome 14 DNA sequence BAC R-731F5 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176237

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    gtgtgtgtggcggctgcagg 47
             ||||||||||||||||||||
Sbjct: 34140 gtgtgtgtggcggctgcagg 34121



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    gtgtgtgtggcggctgcagg 47
             ||||||||||||||||||||
Sbjct: 15413 gtgtgtgtggcggctgcagg 15394



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>emb|AL122127.6|CNS01DT2 Human chromosome 14 DNA sequence BAC R-417P24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    gtgtgtgtggcggctgcagg 47
             ||||||||||||||||||||
Sbjct: 38357 gtgtgtgtggcggctgcagg 38376



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    gtgtgtgtggcggctgcagg 47
             ||||||||||||||||||||
Sbjct: 10593 gtgtgtgtggcggctgcagg 10612



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>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14
          Length = 1279711

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      gtgtgtgtggcggctgcagg 47
               ||||||||||||||||||||
Sbjct: 1199641 gtgtgtgtggcggctgcagg 1199622



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      gtgtgtgtggcggctgcagg 47
               ||||||||||||||||||||
Sbjct: 1180914 gtgtgtgtggcggctgcagg 1180895



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      gtgtgtgtggcggctgcagg 47
               ||||||||||||||||||||
Sbjct: 1155873 gtgtgtgtggcggctgcagg 1155854



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      gtgtgtgtggcggctgcagg 47
               ||||||||||||||||||||
Sbjct: 1082645 gtgtgtgtggcggctgcagg 1082626



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 28      gtgtgtgtggcggctgcagg 47
               ||||||||||||||||||||
Sbjct: 1054881 gtgtgtgtggcggctgcagg 1054862



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 140     ggcgcgacctcgacggcgcc 159
               ||||||||||||||||||||
Sbjct: 3160808 ggcgcgacctcgacggcgcc 3160789



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>emb|AL121820.4|CNS01DSM Human chromosome 14 DNA sequence BAC C-2325P2 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 117449

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   tgcgcgcggcgacctgtgcg 226
             ||||||||||||||||||||
Sbjct: 65523 tgcgcgcggcgacctgtgcg 65542



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>emb|Z17370.1|HSIGG1CP H.sapiens germline immunoglobulin gamma1 chain constant region gene
          Length = 2802

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   gtgtgtgtggcggctgcagg 47
            ||||||||||||||||||||
Sbjct: 2726 gtgtgtgtggcggctgcagg 2707



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>gb|AY048670.1| Streptomyces globisporus enediyne antitumor antibiotic C-1027
             biosynthetic gene cluster, complete sequence
          Length = 85163

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   cgcggcgaccacgggcagcc 446
             ||||||||||||||||||||
Sbjct: 33547 cgcggcgaccacgggcagcc 33566



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>emb|AL928761.2|CNS08CBY Human chromosome 14 DNA sequence Partial sequence from library PCR
            product from genomic DNA from chromosome 14 of Homo
            sapiens (Human), complete sequence
          Length = 13616

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   gtgtgtgtggcggctgcagg 47
            ||||||||||||||||||||
Sbjct: 1839 gtgtgtgtggcggctgcagg 1820



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>dbj|AP000845.4| Homo sapiens genomic DNA, chromosome 18p clone:RP11-705O1, complete
             sequences
          Length = 142000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     tttttcgttttcctctctag 23
             ||||||||||||||||||||
Sbjct: 25776 tttttcgttttcctctctag 25795


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,645,614
Number of Sequences: 3902068
Number of extensions: 2645614
Number of successful extensions: 66005
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63941
Number of HSP's gapped (non-prelim): 2064
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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