Clone Name | bastl28b02 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_746906.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g08270) partial mRNA Length = 1005 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 gtgagcggggcgacaggcgcga 146 |||||||||||||||||||||| Sbjct: 352 gtgagcggggcgacaggcgcga 331 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 gtgagcggggcgacaggcgcga 191 |||||||||||||||||||||| Sbjct: 352 gtgagcggggcgacaggcgcga 331
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 353 gcggtgaccttggcgacggccg 374 |||||||||||||||||||||| Sbjct: 3135 gcggtgaccttggcgacggccg 3156
>gb|AY183411.1| Phytophthora sojae elicitin protein (SOJ3) mRNA, complete cds Length = 814 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 225 cgacggcgacggccgcgacctcgacg 250 |||||||| ||||||||||||||||| Sbjct: 557 cgacggcgtcggccgcgacctcgacg 582
>gb|DQ229243.1| Phytophthora sojae elicitin-like protein SOJ3D gene, complete cds Length = 633 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 225 cgacggcgacggccgcgacctcgacg 250 |||||||| ||||||||||||||||| Sbjct: 488 cgacggcgtcggccgcgacctcgacg 513
>emb|AL627422.12| Human DNA sequence from clone XXyac-21IF11 on chromosome 6 Contains the 5' end of a novel gene, a novel gene, a SNARE Vti1a-beta protein pseudogene (LOC143187) and a CpG island, complete sequence Length = 115866 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 cagcactggaacagcaccatc 426 ||||||||||||||||||||| Sbjct: 70806 cagcactggaacagcaccatc 70786
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 cggcgacctgtgcgacggcgacggc 237 |||||||||| |||||||||||||| Sbjct: 1863930 cggcgacctgcgcgacggcgacggc 1863906
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 141 gcgcgacctcgacggcgcccg 161 ||||||||||||||||||||| Sbjct: 1646380 gcgcgacctcgacggcgcccg 1646400
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 cggcgacctgtgcgacggcgacggc 237 |||||||||| |||||||||||||| Sbjct: 1813293 cggcgacctgcgcgacggcgacggc 1813269
>ref|XM_417875.1| PREDICTED: Gallus gallus similar to Sorting nexin 19 (LOC419734), mRNA Length = 2771 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cggcgcacgtgcgcgaggcg 313 |||||||||||||||||||| Sbjct: 62 cggcgcacgtgcgcgaggcg 81
>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence Length = 204120 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 gcgacggcgacggccgcgac 243 |||||||||||||||||||| Sbjct: 60454 gcgacggcgacggccgcgac 60473
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 gcgacggcgacggccgcgacctcg 247 ||||||||||||| |||||||||| Sbjct: 1653221 gcgacggcgacgggcgcgacctcg 1653198
>gb|AY191612.1| Pan troglodytes Rho-associated protein kinase (ROCK1) gene, partial cds; ubiquitin specific protease 14 (USP14) gene, complete cds; and THO complex 1 (THOC1) gene, partial cds Length = 186959 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tttttcgttttcctctctag 23 |||||||||||||||||||| Sbjct: 141238 tttttcgttttcctctctag 141257
>gb|BC098889.1| Danio rerio telomeric repeat binding factor a, mRNA (cDNA clone MGC:114011 IMAGE:2601225), complete cds Length = 1910 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 1361 gtgtgtgtggcggctgcagg 1342
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gcgacctcgacagcgcccgt 207 |||||||||||||||||||| Sbjct: 1307899 gcgacctcgacagcgcccgt 1307918
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 224 gcgacggcgacggccgcgacctcg 247 ||||||||||||| |||||||||| Sbjct: 2988371 gcgacggcgacgggcgcgacctcg 2988348
>emb|BX321864.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 9/10 Length = 326050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 467 tgatttgcaaggacttgtga 486 |||||||||||||||||||| Sbjct: 272170 tgatttgcaaggacttgtga 272189
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgacggcgacggccgcgacc 244 |||||||||||||||||||| Sbjct: 14723 cgacggcgacggccgcgacc 14742
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gtgcgacggcgacggccgcg 241 |||||||||||||||||||| Sbjct: 5654 gtgcgacggcgacggccgcg 5673
>emb|AL606682.3|OSJN00085 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065O17, complete sequence Length = 167269 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gtgcgacggcgacggccgcg 241 |||||||||||||||||||| Sbjct: 161282 gtgcgacggcgacggccgcg 161301
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ccggcgcgacctcgagagcg 112 |||||||||||||||||||| Sbjct: 139665 ccggcgcgacctcgagagcg 139684
>emb|AJ307640.1|MOB307640 Mycobacterium obuense partial hsp65 gene for 65 kDa heat shock protein Length = 408 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 cggtgaccttggcgacggcc 373 |||||||||||||||||||| Sbjct: 208 cggtgaccttggcgacggcc 189
>gb|BC096857.1| Danio rerio telomeric repeat binding factor a, mRNA (cDNA clone MGC:111909 IMAGE:7221992), complete cds Length = 1876 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 1343 gtgtgtgtggcggctgcagg 1324
>gb|AC183297.3| Pan troglodytes BAC clone CH251-300E12 from chromosome 18, complete sequence Length = 173095 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tttttcgttttcctctctag 23 |||||||||||||||||||| Sbjct: 76152 tttttcgttttcctctctag 76171
>gb|AE005766.1| Caulobacter crescentus CB15 section 92 of 359 of the complete genome Length = 10091 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ggcgaccggcgcgacctcga 107 |||||||||||||||||||| Sbjct: 8079 ggcgaccggcgcgacctcga 8060
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 cgacggccgcgacctcgacgaccc 254 |||||||||||||||| ||||||| Sbjct: 3541589 cgacggccgcgacctcaacgaccc 3541612
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 222 gtgcgacggcgacggccgcgacctcgac 249 ||||||||||||||||||| ||||||| Sbjct: 5355478 gtgcgacggcgacggccgcctcctcgac 5355505
>gb|AF072135.1|AF072135 Caulobacter crescentus hook associated protein I homolog (flaN), flagellar operon, complete sequence and II.1 protein (II.1) genes, complete cds Length = 6943 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 ggcgaccggcgcgacctcga 107 |||||||||||||||||||| Sbjct: 2389 ggcgaccggcgcgacctcga 2370
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 cgacggccgcgacctcgacg 250 |||||||||||||||||||| Sbjct: 1500447 cgacggccgcgacctcgacg 1500466
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gtgcgacggcgacggccgcg 241 |||||||||||||||||||| Sbjct: 27998429 gtgcgacggcgacggccgcg 27998448
>dbj|D78345.1| Homo sapiens DNA, gamma gene loci of immunoglobulin heavy chains Length = 21013 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 11385 gtgtgtgtggcggctgcagg 11366
>gb|AF547863.1| Mycobacterium obuense strain CIP 106803 65 kDa heat shock protein (hsp65) gene, partial cds Length = 424 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 cggtgaccttggcgacggcc 373 |||||||||||||||||||| Sbjct: 231 cggtgaccttggcgacggcc 212
>dbj|AB126344.1| Haloarcula vallismortis ndk gene for nucleoside diphosphate kinase, partial cds Length = 590 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 419 gcaccatccgcggcgaccacgggc 442 ||||||||||||||||| |||||| Sbjct: 293 gcaccatccgcggcgactacgggc 316
>dbj|AB121065.1| Haloarcula vallismortis ndk gene for nucleoside diphosphate kinase, partial cds Length = 423 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 419 gcaccatccgcggcgaccacgggc 442 ||||||||||||||||| |||||| Sbjct: 293 gcaccatccgcggcgactacgggc 316
>emb|AL928742.3|CNS08CBF Human chromosome 14 DNA sequence BAC R-731F5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176237 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 34140 gtgtgtgtggcggctgcagg 34121 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 15413 gtgtgtgtggcggctgcagg 15394
>emb|AL122127.6|CNS01DT2 Human chromosome 14 DNA sequence BAC R-417P24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 169802 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 38357 gtgtgtgtggcggctgcagg 38376 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 10593 gtgtgtgtggcggctgcagg 10612
>ref|NG_001019.4| Homo sapiens immunoglobulin heavy locus (IGH@) on chromosome 14 Length = 1279711 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 1199641 gtgtgtgtggcggctgcagg 1199622 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 1180914 gtgtgtgtggcggctgcagg 1180895 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 1155873 gtgtgtgtggcggctgcagg 1155854 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 1082645 gtgtgtgtggcggctgcagg 1082626 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 1054881 gtgtgtgtggcggctgcagg 1054862
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ggcgcgacctcgacggcgcc 159 |||||||||||||||||||| Sbjct: 3160808 ggcgcgacctcgacggcgcc 3160789
>emb|AL121820.4|CNS01DSM Human chromosome 14 DNA sequence BAC C-2325P2 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 117449 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 tgcgcgcggcgacctgtgcg 226 |||||||||||||||||||| Sbjct: 65523 tgcgcgcggcgacctgtgcg 65542
>emb|Z17370.1|HSIGG1CP H.sapiens germline immunoglobulin gamma1 chain constant region gene Length = 2802 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 2726 gtgtgtgtggcggctgcagg 2707
>gb|AY048670.1| Streptomyces globisporus enediyne antitumor antibiotic C-1027 biosynthetic gene cluster, complete sequence Length = 85163 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 cgcggcgaccacgggcagcc 446 |||||||||||||||||||| Sbjct: 33547 cgcggcgaccacgggcagcc 33566
>emb|AL928761.2|CNS08CBY Human chromosome 14 DNA sequence Partial sequence from library PCR product from genomic DNA from chromosome 14 of Homo sapiens (Human), complete sequence Length = 13616 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 gtgtgtgtggcggctgcagg 47 |||||||||||||||||||| Sbjct: 1839 gtgtgtgtggcggctgcagg 1820
>dbj|AP000845.4| Homo sapiens genomic DNA, chromosome 18p clone:RP11-705O1, complete sequences Length = 142000 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tttttcgttttcctctctag 23 |||||||||||||||||||| Sbjct: 25776 tttttcgttttcctctctag 25795 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,645,614 Number of Sequences: 3902068 Number of extensions: 2645614 Number of successful extensions: 66005 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63941 Number of HSP's gapped (non-prelim): 2064 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)