>YIA3_MYCTU (P19773) Insertion element IS986 hypothetical 13 kDa protein (ORFC)|
          Length = 127

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 54  VERNGGGQRGADPAPQDPPRRGAG 125
           VE +GGG RG+DP  QDP   G G
Sbjct: 24  VEDHGGGHRGSDPPAQDPASVGVG 47

>MATN3_HUMAN (O15232) Matrilin-3 precursor|
          Length = 486

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 3   PQLLLPHASANPSRRPGVE----RNGGGQRGADPAPQDPPRRGAGRTTD 137
           P LLLP A+ +P  RPG      R  GG  G  P+P  P    A  T++
Sbjct: 19  PLLLLPSAAPDPVARPGFRRLETRGPGGSPGRRPSPAAPDGAPASGTSE 67

>CCDC9_MOUSE (Q8VC31) Coiled-coil domain-containing protein 9|
          Length = 543

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 27  SANPSRR-PGVERNGGGQRGADPAPQDPPRRGAGRTT 134
           S  PSRR PG  R  G  RG    PQ   R G GR +
Sbjct: 72  SLGPSRRTPGTPRPPGASRGGRTHPQQGGRAGVGRAS 108

>EXBD_SYNY3 (P72942) Putative biopolymer transport exbD protein|
          Length = 269

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +3

Query: 15  LPHASANPSRRPGVERN--GGGQRGADPAPQDPPRRGAGRT 131
           +P A+ N S  PG+     GGG    DP  Q P   G G T
Sbjct: 222 MPDANGNVSPNPGMNPGFPGGGAMSPDPNSQSPNLPGMGNT 262

>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 17/39 (43%), Positives = 18/39 (46%)
 Frame = +3

Query: 18  PHASANPSRRPGVERNGGGQRGADPAPQDPPRRGAGRTT 134
           P  S  P  RPG     GG  G   A +  PR GAGR T
Sbjct: 171 PSKSPKPGARPGPRP--GGSAGLPSAARPGPRPGAGRRT 207

>ADA2B_DIDMA (O77715) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 382

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 3   PQLLLPHASANPSRRPGVERNGGGQRGADPAPQDPPRRGA 122
           P +L     AN   +P  ER GG Q G   +P  PP + +
Sbjct: 221 PSILPAVGEANGHSKPPGEREGGEQMGDPTSPSTPPNQSS 260

>POLG_SBMVG (Q90069) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3066

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 39   SRRPGVERNGGGQRGADPAPQDPPRRGAGRTTDDISISSCG 161
            S + G E+ G    G DP       +GAG ++ D+++ S G
Sbjct: 2799 SLQSGKEKEGDMDAGKDPKKSTSSSKGAGTSSKDVNVGSKG 2839

>R3HD1_HUMAN (Q15032) R3H domain-containing protein 1|
          Length = 1099

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 160 PHEEMLMSSVVLPAPRRGGSWGAGSAPR*PPP 65
           PH  M  S+VVL +P++ G     + P  PPP
Sbjct: 564 PHAAMFQSTVVLQSPQQSGYIMTAAPPPHPPP 595

>LIPE_AERHY (P40600) Extracellular lipase precursor (EC 3.1.1.3)|
           (Triacylglycerol lipase)
          Length = 684

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = +3

Query: 60  RNGGGQRGADPAPQ-----DPPRRGAGR 128
           R GGG RG+ PA       DPP R AGR
Sbjct: 371 RAGGGGRGSGPAGDADCRSDPPERAAGR 398

>SMRD1_MOUSE (Q61466) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily D member 1 (SWI/SNF
           complex 60 kDa subunit) (60 kDa BRG-1/Brm associated
           factor subunit A) (BRG1-associated factor 60A) (D15KZ1
           protein)
          Length = 476

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   PQLLLPHASANPSRRPGVERNGGGQRGADPAPQ 101
           P +  P    NPS RPG+ ++G  Q    PAPQ
Sbjct: 35  PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 67

>SMRD1_HUMAN (Q96GM5) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily D member 1 (SWI/SNF
           complex 60 kDa subunit) (60 kDa BRG-1/Brm associated
           factor subunit A) (BRG1-associated factor 60A)
          Length = 476

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   PQLLLPHASANPSRRPGVERNGGGQRGADPAPQ 101
           P +  P    NPS RPG+ ++G  Q    PAPQ
Sbjct: 35  PSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQ 67

>FRI1_ARATH (Q39101) Ferritin-1, chloroplast precursor (EC 1.16.3.1) (AtFer1)|
          Length = 255

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 3  PQLLLPHASANPSRRPGVERNGGGQR 80
          P+ LLPH SA+PS   G  R  GG R
Sbjct: 18 PKPLLPHGSASPSVSLGFSRKVGGGR 43

>ANT3_CHICK (Q03352) Antithrombin-III precursor (ATIII) (Fragment)|
          Length = 105

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 33  NPSRRPGVERNGGGQRGADPAPQDPPRRGA 122
           NP ++P   R  G   G DP    PP  G+
Sbjct: 43  NPEKKPQERRGAGAGEGQDPGVHKPPASGS 72

>YR799_MIMIV (Q5UR63) Hypothetical protein R799|
          Length = 201

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 141 CHPSSSLRRGAAGPGARDLRRADLPRS 61
           C  + S R G AGP AR+ R  ++PRS
Sbjct: 149 CERTGSRRYGIAGPRARECRYHNVPRS 175

>PP1RA_MOUSE (Q80W00) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 888

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 36  PSRRPGVERNGGGQRGADPAPQDPPRRGA 122
           P   PG    G G RG +  P  PP RGA
Sbjct: 696 PGPAPGPYHRGRGGRGGNEPPPPPPFRGA 724

>UL61_HCMVA (P16818) Hypothetical protein UL61|
          Length = 431

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 3   PQLLLPHASANPSRRPGVERNGGGQRGADPAPQDPPRRGAG 125
           P+   PH ++ P  RP      GG RGADP       RG G
Sbjct: 19  PERFRPHPTS-PPHRPAHTPQPGGVRGADPGWAADGGRGVG 58

>TOP3_CAEEL (O61660) DNA topoisomerase 3 (EC 5.99.1.2) (DNA topoisomerase III)|
          Length = 759

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 18  PHASANPSRRPGVERNGGGQRGADPAPQDPPRRGAGR 128
           P     P R PG    GGG     PAP  PP +  GR
Sbjct: 621 PGGGGGPPRGPG--GGGGGGPTGPPAPPKPPAKPRGR 655


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,208,447
Number of Sequences: 219361
Number of extensions: 1374638
Number of successful extensions: 4567
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4551
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)