ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480617.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
5dbj|AK071442.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
6gb|AC142402.2| Homo sapiens chromosome 8, clone XXfos-800107C11,... 42 1.7
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
8gb|AF205589.5| Homo sapiens chromosome 8 clone CTA-393G12 map qt... 42 1.7
9dbj|AP003933.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
10dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
11ref|XM_482368.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
12ref|XM_424392.1| PREDICTED: Gallus gallus similar to BBP-like pr... 40 6.6
13gb|AC145908.3| Pan troglodytes BAC clone RP43-40K18 from 7, comp... 40 6.6
14gb|AC146385.4| Pan troglodytes BAC clone RP43-126C6 from 7, comp... 40 6.6
15ref|NM_146688.1| Mus musculus olfactory receptor 262 (Olfr262), ... 40 6.6
16gb|AY317348.1| Mus musculus olfactory receptor Olfr262 (Olfr262)... 40 6.6
17gb|AC129773.4| Mus musculus BAC clone RP24-73D4 from chromosome ... 40 6.6
18gb|AC146213.2| Pan troglodytes BAC clone RP43-33O10 from 7, comp... 40 6.6
19gb|AC124703.3| Mus musculus BAC clone RP24-261G23 from chromosom... 40 6.6
20emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chro... 40 6.6
21gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.6
22emb|AL109838.11|HSDJ796I8 Human DNA sequence from clone RP4-796I... 40 6.6
23ref|XM_963327.1| PREDICTED: Tribolium castaneum similar to CG311... 40 6.6
24ref|XM_777275.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.6
25emb|BX927279.15| Zebrafish DNA sequence from clone CH211-101N16 ... 40 6.6
26emb|CR388058.6| Zebrafish DNA sequence from clone DKEY-184L17 in... 40 6.6
27dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.6
28gb|AY073407.1| Mus musculus olfactory receptor MOR214-1 gene, co... 40 6.6
29gb|AC009245.11| Homo sapiens chromosome 7 clone RP11-351B12, com... 40 6.6
30gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, com... 40 6.6
31gb|AC025133.6| Homo sapiens chromosome 8, clone RP11-227F6, comp... 40 6.6
32emb|CR386237.1| Gallus gallus finished cDNA, clone ChEST247e22 40 6.6
33gb|AC083865.2|AC083865 Homo sapiens chromosome 7 clone RP11-605P... 40 6.6
34gb|AC083860.2|AC083860 Homo sapiens chromosome 7 clone RP11-3P18... 40 6.6
35dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.6
36emb|BX005442.10| Zebrafish DNA sequence from clone DKEY-88J15, c... 40 6.6
37dbj|AK120890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
38dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
39emb|CR855395.11| Zebrafish DNA sequence from clone CH211-106P4 i... 40 6.6
40gb|AC131724.4| Mus musculus BAC clone RP23-129E9 from 19, comple... 40 6.6 
>ref|XM_480617.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1899

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 389 tctaaaactcgaagtgggcttgttagggtaaacaatattgtggattccagtgagggttca 448
           |||||||| ||||||||||||||||||| ||||| || ||||| | ||||| | ||||||
Sbjct: 823 tctaaaacacgaagtgggcttgttaggggaaacactactgtggctgccagtaatggttca 882

            
Query: 449 t 449
           |
Sbjct: 883 t 883



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 382 atcatgttctaaaactcgaagtgggcttgttaggg 416
           ||||||||||||||| ||||||||||||| |||||
Sbjct: 690 atcatgttctaaaacacgaagtgggcttgctaggg 724



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 385 atgttctaaaactcgaagtgggcttgttag 414
           |||||||||||| |||||||||||||||||
Sbjct: 630 atgttctaaaacacgaagtgggcttgttag 659



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 388 ttctaaaactcgaagtgggcttgttagggtaaaca 422
           |||||||||  ||||||||||||||||| ||||||
Sbjct: 441 ttctaaaacaagaagtgggcttgttaggataaaca 475



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 383  tcatgttctaaaactcgaagtgggcttgt 411
            ||||| |||| ||||||||||||||||||
Sbjct: 1006 tcatgctctagaactcgaagtgggcttgt 1034



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 383 tcatgttctaaaactcgaagtgggcttgttagggtaaacaa 423
           |||||||||| |||  | ||||||||||||||| |||||||
Sbjct: 373 tcatgttctagaacatgcagtgggcttgttaggttaaacaa 413



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 cagcaacagttcatcttctagaaca 334
           |||||||||||||| ||||||||||
Sbjct: 363 cagcaacagttcatgttctagaaca 387



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 389 tctaaaactcgaagtgggcttgttaggg 416
           ||||||||  ||||||||||||||||||
Sbjct: 760 tctaaaacaagaagtgggcttgttaggg 787
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                           
Query: 389     tctaaaactcgaagtgggcttgttagggtaaacaatattgtggattccagtgagggttca 448
               |||||||| ||||||||||||||||||| ||||| || ||||| | ||||| | ||||||
Sbjct: 6222013 tctaaaacacgaagtgggcttgttaggggaaacactactgtggctgccagtaatggttca 6222072

                
Query: 449     t 449
               |
Sbjct: 6222073 t 6222073



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                  
Query: 382     atcatgttctaaaactcgaagtgggcttgttaggg 416
               ||||||||||||||| ||||||||||||| |||||
Sbjct: 6221880 atcatgttctaaaacacgaagtgggcttgctaggg 6221914



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 385     atgttctaaaactcgaagtgggcttgttag 414
               |||||||||||| |||||||||||||||||
Sbjct: 6221820 atgttctaaaacacgaagtgggcttgttag 6221849



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 388     ttctaaaactcgaagtgggcttgttagggtaaaca 422
               |||||||||  ||||||||||||||||| ||||||
Sbjct: 6221631 ttctaaaacaagaagtgggcttgttaggataaaca 6221665



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 383     tcatgttctaaaactcgaagtgggcttgt 411
               ||||| |||| ||||||||||||||||||
Sbjct: 6222196 tcatgctctagaactcgaagtgggcttgt 6222224



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 383     tcatgttctaaaactcgaagtgggcttgttagggtaaacaa 423
               |||||||||| |||  | ||||||||||||||| |||||||
Sbjct: 6221563 tcatgttctagaacatgcagtgggcttgttaggttaaacaa 6221603



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 310     cagcaacagttcatcttctagaaca 334
               |||||||||||||| ||||||||||
Sbjct: 6221553 cagcaacagttcatgttctagaaca 6221577



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 105      ccgccgcgccgcggcgcagg 124
                ||||||||||||||||||||
Sbjct: 19669142 ccgccgcgccgcggcgcagg 19669161



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 389     tctaaaactcgaagtgggcttgttaggg 416
               ||||||||  ||||||||||||||||||
Sbjct: 6221950 tctaaaacaagaagtgggcttgttaggg 6221977
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>dbj|AP003919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1734_E04
          Length = 101439

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                        
Query: 389  tctaaaactcgaagtgggcttgttagggtaaacaatattgtggattccagtgagggttca 448
            |||||||| ||||||||||||||||||| ||||| || ||||| | ||||| | ||||||
Sbjct: 8150 tctaaaacacgaagtgggcttgttaggggaaacactactgtggctgccagtaatggttca 8209

             
Query: 449  t 449
            |
Sbjct: 8210 t 8210



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                               
Query: 382  atcatgttctaaaactcgaagtgggcttgttaggg 416
            ||||||||||||||| ||||||||||||| |||||
Sbjct: 8017 atcatgttctaaaacacgaagtgggcttgctaggg 8051



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 385  atgttctaaaactcgaagtgggcttgttag 414
            |||||||||||| |||||||||||||||||
Sbjct: 7957 atgttctaaaacacgaagtgggcttgttag 7986



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 388  ttctaaaactcgaagtgggcttgttagggtaaaca 422
            |||||||||  ||||||||||||||||| ||||||
Sbjct: 7768 ttctaaaacaagaagtgggcttgttaggataaaca 7802



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 383  tcatgttctaaaactcgaagtgggcttgt 411
            ||||| |||| ||||||||||||||||||
Sbjct: 8333 tcatgctctagaactcgaagtgggcttgt 8361



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 383  tcatgttctaaaactcgaagtgggcttgttagggtaaacaa 423
            |||||||||| |||  | ||||||||||||||| |||||||
Sbjct: 7700 tcatgttctagaacatgcagtgggcttgttaggttaaacaa 7740



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 310  cagcaacagttcatcttctagaaca 334
            |||||||||||||| ||||||||||
Sbjct: 7690 cagcaacagttcatgttctagaaca 7714



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 389  tctaaaactcgaagtgggcttgttaggg 416
            ||||||||  ||||||||||||||||||
Sbjct: 8087 tctaaaacaagaagtgggcttgttaggg 8114
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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                         
Query: 389   tctaaaactcgaagtgggcttgttagggtaaacaatattgtggattccagtgagggttca 448
             |||||||| ||||||||||||||||||| ||||| || ||||| | ||||| | ||||||
Sbjct: 85406 tctaaaacacgaagtgggcttgttaggggaaacactactgtggctgccagtaatggttca 85465

              
Query: 449   t 449
             |
Sbjct: 85466 t 85466



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 382   atcatgttctaaaactcgaagtgggcttgttaggg 416
             ||||||||||||||| ||||||||||||| |||||
Sbjct: 85273 atcatgttctaaaacacgaagtgggcttgctaggg 85307



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 385   atgttctaaaactcgaagtgggcttgttag 414
             |||||||||||| |||||||||||||||||
Sbjct: 85213 atgttctaaaacacgaagtgggcttgttag 85242



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 388   ttctaaaactcgaagtgggcttgttagggtaaaca 422
             |||||||||  ||||||||||||||||| ||||||
Sbjct: 85024 ttctaaaacaagaagtgggcttgttaggataaaca 85058



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 383   tcatgttctaaaactcgaagtgggcttgt 411
             ||||| |||| ||||||||||||||||||
Sbjct: 85589 tcatgctctagaactcgaagtgggcttgt 85617



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 383   tcatgttctaaaactcgaagtgggcttgttagggtaaacaa 423
             |||||||||| |||  | ||||||||||||||| |||||||
Sbjct: 84956 tcatgttctagaacatgcagtgggcttgttaggttaaacaa 84996



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 310   cagcaacagttcatcttctagaaca 334
             |||||||||||||| ||||||||||
Sbjct: 84946 cagcaacagttcatgttctagaaca 84970



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 389   tctaaaactcgaagtgggcttgttaggg 416
             ||||||||  ||||||||||||||||||
Sbjct: 85343 tctaaaacaagaagtgggcttgttaggg 85370
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>dbj|AK071442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091M14, full
           insert sequence
          Length = 1898

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                       
Query: 389 tctaaaactcgaagtgggcttgttagggtaaacaatattgtggattccagtgagggttca 448
           |||||||| ||||||||||||||||||| ||||| || ||||| | ||||| | ||||||
Sbjct: 822 tctaaaacacgaagtgggcttgttaggggaaacactactgtggctgccagtaatggttca 881

            
Query: 449 t 449
           |
Sbjct: 882 t 882



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 382 atcatgttctaaaactcgaagtgggcttgttaggg 416
           ||||||||||||||| ||||||||||||| |||||
Sbjct: 689 atcatgttctaaaacacgaagtgggcttgctaggg 723



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 385 atgttctaaaactcgaagtgggcttgttag 414
           |||||||||||| |||||||||||||||||
Sbjct: 629 atgttctaaaacacgaagtgggcttgttag 658



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 388 ttctaaaactcgaagtgggcttgttagggtaaaca 422
           |||||||||  ||||||||||||||||| ||||||
Sbjct: 440 ttctaaaacaagaagtgggcttgttaggataaaca 474



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 383  tcatgttctaaaactcgaagtgggcttgt 411
            ||||| |||| ||||||||||||||||||
Sbjct: 1005 tcatgctctagaactcgaagtgggcttgt 1033



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 383 tcatgttctaaaactcgaagtgggcttgttagggtaaacaa 423
           |||||||||| |||  | ||||||||||||||| |||||||
Sbjct: 372 tcatgttctagaacatgcagtgggcttgttaggttaaacaa 412



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 310 cagcaacagttcatcttctagaaca 334
           |||||||||||||| ||||||||||
Sbjct: 362 cagcaacagttcatgttctagaaca 386



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 389 tctaaaactcgaagtgggcttgttaggg 416
           ||||||||  ||||||||||||||||||
Sbjct: 759 tctaaaacaagaagtgggcttgttaggg 786
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>gb|AC142402.2| Homo sapiens chromosome 8, clone XXfos-800107C11, complete sequence
          Length = 46082

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 83   cgcagatcccgcgccccaggacccg 107
            |||||||||||||||||||| ||||
Sbjct: 1300 cgcagatcccgcgccccaggccccg 1324
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 31       ctaaccctagccgtcgccccg 51
                |||||||||||||||||||||
Sbjct: 20787489 ctaaccctagccgtcgccccg 20787469
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>gb|AF205589.5| Homo sapiens chromosome 8 clone CTA-393G12 map qtel, complete sequence
          Length = 143847

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 83    cgcagatcccgcgccccaggacccg 107
             |||||||||||||||||||| ||||
Sbjct: 98838 cgcagatcccgcgccccaggccccg 98862
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>dbj|AP003933.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0066C06
          Length = 162304

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 31     ctaaccctagccgtcgccccg 51
              |||||||||||||||||||||
Sbjct: 130447 ctaaccctagccgtcgccccg 130427
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>dbj|AP003902.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1110C07
          Length = 173859

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 31   ctaaccctagccgtcgccccg 51
            |||||||||||||||||||||
Sbjct: 5931 ctaaccctagccgtcgccccg 5911
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>ref|XM_482368.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ccgccgcgccgcggcgcagg 124
           ||||||||||||||||||||
Sbjct: 90  ccgccgcgccgcggcgcagg 71
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>ref|XM_424392.1| PREDICTED: Gallus gallus similar to BBP-like protein 1 (LOC426780),
           mRNA
          Length = 975

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 gacccgccgcgccgcggcgc 121
           ||||||||||||||||||||
Sbjct: 62  gacccgccgcgccgcggcgc 43
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>gb|AC145908.3| Pan troglodytes BAC clone RP43-40K18 from 7, complete sequence
          Length = 209731

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    ctagaactagaagtggcctt 283
              ||||||||||||||||||||
Sbjct: 113738 ctagaactagaagtggcctt 113719
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>gb|AC146385.4| Pan troglodytes BAC clone RP43-126C6 from 7, complete sequence
          Length = 162268

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 211    gttctttgtgaattgaagtaacatcattatgt 242
              ||||||||||| ||||| ||||||| ||||||
Sbjct: 132845 gttctttgtgatttgaaataacatctttatgt 132876
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>ref|NM_146688.1| Mus musculus olfactory receptor 262 (Olfr262), mRNA
          Length = 939

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 gattgccaggggaaacagca 362
           ||||||||||||||||||||
Sbjct: 3   gattgccaggggaaacagca 22
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>gb|AY317348.1| Mus musculus olfactory receptor Olfr262 (Olfr262) gene, complete
           cds
          Length = 939

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 gattgccaggggaaacagca 362
           ||||||||||||||||||||
Sbjct: 3   gattgccaggggaaacagca 22
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>gb|AC129773.4| Mus musculus BAC clone RP24-73D4 from chromosome 19, complete sequence
          Length = 218771

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   gattgccaggggaaacagca 362
             ||||||||||||||||||||
Sbjct: 15120 gattgccaggggaaacagca 15101
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>gb|AC146213.2| Pan troglodytes BAC clone RP43-33O10 from 7, complete sequence
          Length = 187649

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 211  gttctttgtgaattgaagtaacatcattatgt 242
            ||||||||||| ||||| ||||||| ||||||
Sbjct: 3119 gttctttgtgatttgaaataacatctttatgt 3088
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>gb|AC124703.3| Mus musculus BAC clone RP24-261G23 from chromosome 5, complete sequence
          Length = 183906

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   ctagaactagaagtggcctt 283
             ||||||||||||||||||||
Sbjct: 65991 ctagaactagaagtggcctt 65972
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>emb|AL512444.20| Human DNA sequence from clone RP11-69E9 on chromosome 1 Contains part
             of the EPHB2 gene for EphB2 and a novel gene, complete
             sequence
          Length = 126589

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 285   tcaggggaagcagtatcagg 304
             ||||||||||||||||||||
Sbjct: 47234 tcaggggaagcagtatcagg 47253
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    gtggccacagaaacatttatactg 180
              ||||||||||||||||||| ||||
Sbjct: 582371 gtggccacagaaacatttaaactg 582348
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>emb|AL109838.11|HSDJ796I8 Human DNA sequence from clone RP4-796I8 on chromosome 20 Contains a
             putative novel gene, ESTs, STSs and GSSs, complete
             sequence
          Length = 121235

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   tgtgaattgaagtaacatca 236
             ||||||||||||||||||||
Sbjct: 31237 tgtgaattgaagtaacatca 31256
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>ref|XM_963327.1| PREDICTED: Tribolium castaneum similar to CG31126-PA (LOC656826),
           mRNA
          Length = 1821

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 353 ggaaacagcatcatggatcc 372
           ||||||||||||||||||||
Sbjct: 297 ggaaacagcatcatggatcc 316
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>ref|XM_777275.1| PREDICTED: Strongylocentrotus purpuratus similar to polymerase (DNA
           directed), delta 2, regulatory subunit (LOC577017), mRNA
          Length = 1329

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 320 tcatcttctagaacaagaaa 339
           ||||||||||||||||||||
Sbjct: 365 tcatcttctagaacaagaaa 346
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>emb|BX927279.15| Zebrafish DNA sequence from clone CH211-101N16 in linkage group 13,
              complete sequence
          Length = 182020

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    aaacatttatactgttgttt 186
              ||||||||||||||||||||
Sbjct: 177614 aaacatttatactgttgttt 177633
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>emb|CR388058.6| Zebrafish DNA sequence from clone DKEY-184L17 in linkage group 8,
              complete sequence
          Length = 141160

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 455    aagcacttgtatggtaaaca 474
              ||||||||||||||||||||
Sbjct: 133413 aagcacttgtatggtaaaca 133394
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      ccccaggacccgccgcgccg 115
               ||||||||||||||||||||
Sbjct: 1884480 ccccaggacccgccgcgccg 1884499
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>gb|AY073407.1| Mus musculus olfactory receptor MOR214-1 gene, complete cds
          Length = 939

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 gattgccaggggaaacagca 362
           ||||||||||||||||||||
Sbjct: 3   gattgccaggggaaacagca 22
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>gb|AC009245.11| Homo sapiens chromosome 7 clone RP11-351B12, complete sequence
          Length = 197659

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    ctagaactagaagtggcctt 283
              ||||||||||||||||||||
Sbjct: 114222 ctagaactagaagtggcctt 114203
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>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence
          Length = 177777

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   aagtggccttgtcaggggaa 293
             ||||||||||||||||||||
Sbjct: 39972 aagtggccttgtcaggggaa 39953
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>gb|AC025133.6| Homo sapiens chromosome 8, clone RP11-227F6, complete sequence
          Length = 161644

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   aagtggccttgtcaggggaa 293
             ||||||||||||||||||||
Sbjct: 43180 aagtggccttgtcaggggaa 43199
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>emb|CR386237.1| Gallus gallus finished cDNA, clone ChEST247e22
          Length = 978

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 gacccgccgcgccgcggcgc 121
           ||||||||||||||||||||
Sbjct: 62  gacccgccgcgccgcggcgc 43
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>gb|AC083865.2|AC083865 Homo sapiens chromosome 7 clone RP11-605P22, complete sequence
          Length = 218186

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 211    gttctttgtgaattgaagtaacatcattatgt 242
              ||||||||||| ||||| ||||||| ||||||
Sbjct: 119843 gttctttgtgatttgaaataacatctttatgt 119874
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>gb|AC083860.2|AC083860 Homo sapiens chromosome 7 clone RP11-3P18, complete sequence
          Length = 165120

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 211    gttctttgtgaattgaagtaacatcattatgt 242
              ||||||||||| ||||| ||||||| ||||||
Sbjct: 164036 gttctttgtgatttgaaataacatctttatgt 164067
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 92      cgcgccccaggacccgccgc 111
               ||||||||||||||||||||
Sbjct: 4433807 cgcgccccaggacccgccgc 4433788
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>emb|BX005442.10| Zebrafish DNA sequence from clone DKEY-88J15, complete sequence
          Length = 200176

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    ttgttagggtaaacaatatt 427
              ||||||||||||||||||||
Sbjct: 103920 ttgttagggtaaacaatatt 103939
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>dbj|AK120890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029G09, full
           insert sequence
          Length = 1575

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ccgccgcgccgcggcgcagg 124
           ||||||||||||||||||||
Sbjct: 247 ccgccgcgccgcggcgcagg 228
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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0042B03
          Length = 167669

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    ccgccgcgccgcggcgcagg 124
              ||||||||||||||||||||
Sbjct: 144702 ccgccgcgccgcggcgcagg 144721
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>emb|CR855395.11| Zebrafish DNA sequence from clone CH211-106P4 in linkage group 18,
             complete sequence
          Length = 55248

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 217   tgtgaattgaagtaacatcattatgtat 244
             ||||||||||| |||||||| |||||||
Sbjct: 20751 tgtgaattgaaataacatcactatgtat 20724
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>gb|AC131724.4| Mus musculus BAC clone RP23-129E9 from 19, complete sequence
          Length = 225611

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 343    gattgccaggggaaacagca 362
              ||||||||||||||||||||
Sbjct: 218571 gattgccaggggaaacagca 218552


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,296,216
Number of Sequences: 3902068
Number of extensions: 4296216
Number of successful extensions: 83579
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83255
Number of HSP's gapped (non-prelim): 324
length of query: 486
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 464
effective length of database: 17,147,199,772
effective search space: 7956300694208
effective search space used: 7956300694208
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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