ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28a06 |
|---|---|
| Clone Library Name | barley_pub |
>SND1_BOVIN (Q863B3) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 77.4 bits (189), Expect = 2e-14 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 9/96 (9%) Frame = +3 Query: 174 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 326 RG VK V SG +++ G + PPE+ I LS + A LARR V DEP+A+ Sbjct: 21 RGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAVAQPDAKDTPDEPWAF 80 Query: 327 ESREFLRKLCVGKEVTFRVDYTAPSIGREFGTVYLG 434 +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLG 115 Score = 42.4 bits (98), Expect = 6e-04 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 20/110 (18%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 329 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 330 SREFLRKLCVGKEVTFRVDYTAPS----------IGREFGTVYLGDKNVA 449 +REFLRK +GK+V VDY P+ R TV +G N+A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATDTVPAFSERTCATVTIGGINIA 451
>SND1_BRARE (Q7ZT42) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (4SNc-Tudor domain protein) Length = 897 Score = 77.0 bits (188), Expect = 2e-14 Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 9/108 (8%) Frame = +3 Query: 138 IMASNTGASGWLRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRG----- 302 + +S A RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 9 VQSSQASAPQLQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGALARRAIQGQP 68 Query: 303 ----GVDEPFAWESREFLRKLCVGKEVTFRVDYTAPSIGREFGTVYLG 434 DEP+A+++REF+RK +GKEV F V+ P GRE+G VYLG Sbjct: 69 DTKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQ-GREYGMVYLG 115 Score = 39.7 bits (91), Expect = 0.004 Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 22/112 (19%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR-----------RGGVDEPFAW 326 KV V + D +++ K K+I LS + PRL R D P+ + Sbjct: 347 KVMQVVNADAIVV----KLNSGEYKTIHLSSIRPPRLEGEEKNKDKDKRFRPLYDIPYMF 402 Query: 327 ESREFLRKLCVGKEVTFRVDY-----TAPSIG------REFGTVYLGDKNVA 449 E+REFLRK +GK+V VDY A +G R TV +G N+A Sbjct: 403 EAREFLRKKLIGKKVNVTVDYIRAATNAMEMGVPAFPERTCATVTIGGINIA 454
>SND1_MOUSE (Q78PY7) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) Length = 910 Score = 77.0 bits (188), Expect = 2e-14 Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 15/115 (13%) Frame = +3 Query: 135 AIMASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR 296 A A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LAR Sbjct: 2 ASSAQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLAR 61 Query: 297 RGGV---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPSIGREFGTVYLG 434 R DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 62 RAAATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLG 115 Score = 41.6 bits (96), Expect = 0.001 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 20/110 (18%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 329 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 401 Query: 330 SREFLRKLCVGKEVTFRVDYTAPS----------IGREFGTVYLGDKNVA 449 +REFLRK +GK+V VDY P+ R TV +G N+A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIA 451
>SND1_RAT (Q66X93) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (SND p102) (p105 coactivator) Length = 909 Score = 76.6 bits (187), Expect = 3e-14 Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 15/112 (13%) Frame = +3 Query: 144 ASNTGASGW------LRGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGG 305 A ++G+SG RG VK V SG +++ G + PPE+ I LS + A LARR Sbjct: 4 AQSSGSSGGPAVPTVQRGIVKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAA 63 Query: 306 V---------DEPFAWESREFLRKLCVGKEVTFRVDYTAPSIGREFGTVYLG 434 DEP+A+ +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 64 ATQPDGKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLG 114 Score = 42.0 bits (97), Expect = 8e-04 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 20/110 (18%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLAR----------RGGVDEPFAWE 329 KV V + D +++ K K+I LS + PRL R D P+ +E Sbjct: 345 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMFE 400 Query: 330 SREFLRKLCVGKEVTFRVDYTAPS----------IGREFGTVYLGDKNVA 449 +REFLRK +GK+V+ VDY P+ R TV +G N+A Sbjct: 401 AREFLRKKLIGKKVSVTVDYIRPASPATETVPAFSERTCATVTIGGINIA 450
>SND1_HUMAN (Q7KZF4) Staphylococcal nuclease domain-containing protein 1 (p100| co-activator) (100 kDa coactivator) (EBNA2 coactivator p100) Length = 910 Score = 75.5 bits (184), Expect = 6e-14 Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 9/96 (9%) Frame = +3 Query: 174 RGKVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGV---------DEPFAW 326 RG +K V SG +++ G + PPE+ I LS + A LARR DEP+A+ Sbjct: 21 RGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAF 80 Query: 327 ESREFLRKLCVGKEVTFRVDYTAPSIGREFGTVYLG 434 +REFLRK +GKEV F ++ P GRE+G +YLG Sbjct: 81 PAREFLRKKLIGKEVCFTIENKTPQ-GREYGMIYLG 115 Score = 42.4 bits (98), Expect = 6e-04 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 20/110 (18%) Frame = +3 Query: 180 KVKAVTSGDCLLIMGSTKAEIPPEKSITLSYLMAPRLARRGGVDE----------PFAWE 329 KV V + D +++ K K+I LS + PRL D+ P+ +E Sbjct: 346 KVMQVLNADAIVV----KLNSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFE 401 Query: 330 SREFLRKLCVGKEVTFRVDYTAPS----------IGREFGTVYLGDKNVA 449 +REFLRK +GK+V VDY P+ R TV +G N+A Sbjct: 402 AREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIA 451
>VG20_BPT4 (P13334) Structural protein of head (Tail tube protein Gp20)| Length = 524 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = -2 Query: 443 VLVAEVDSAKFSPDARSCVIHSECDLLSYAKFPQKLPAFPSKWLIDS 303 V+ +D +KFSP ++ ++ D+L++ F +K +W +DS Sbjct: 108 VVALNLDKSKFSPKIKNMMLDEFSDVLNHLSFQRKGSDHFRRWYVDS 154
>HISX_BRAJA (P59397) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)| Length = 431 Score = 29.6 bits (65), Expect = 3.9 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Frame = +3 Query: 111 LAAGQSQGAIMASNTGASGWLRGKVKAV----TSGDCLLIMGSTKAEIPPEKSITLSYLM 278 + AG S+ ++A +TG + W+ + A TS +LI S + EK++ Sbjct: 232 MIAGPSEVLVIADDTGNADWIAADLLAQAEHDTSAQSILITDSARLAADVEKAVEAQLKT 291 Query: 279 APRLA 293 PR A Sbjct: 292 LPRTA 296
>MBD6_HUMAN (Q96DN6) Methyl-CpG-binding domain protein 6 (Methyl-CpG-binding| protein MBD6) Length = 1003 Score = 29.6 bits (65), Expect = 3.9 Identities = 35/111 (31%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Frame = -3 Query: 349 FLRNSLLSQANGSSTPPRRA-SLGAIRYDRVMDFSGGISALVLPMMRRQSPEVTAFTLPL 173 FL +SLLS A + PP S R R S S+ + P RR T F L Sbjct: 318 FLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLE 377 Query: 172 SH-PEAPVFDAMIAPWDWPAASGLRLPIRDPGEGVWPAG*SLLSRPDPDPN 23 P+ P AP P LP +P + + P+ SLL P P P+ Sbjct: 378 GRGPQTPRRSRPRAPA--PVPQPFSLP--EPSQPILPSVLSLLGLPTPGPS 424
>CARX_BACSU (P36838) Carbamoyl-phosphate synthase arginine-specific small chain| (EC 6.3.5.5) (Carbamoyl-phosphate synthetase glutamine chain) Length = 353 Score = 29.3 bits (64), Expect = 5.1 Identities = 14/52 (26%), Positives = 23/52 (44%) Frame = -2 Query: 452 VGNVLVAEVDSAKFSPDARSCVIHSECDLLSYAKFPQKLPAFPSKWLIDSTT 297 +GN + E D P ++ V++ CD S+ + L + KW I T Sbjct: 57 IGNYGINEKDFESKKPQVKAAVVYEACDHFSHYEAVYSLKEYLQKWNIPLLT 108
>Y38K_CORSE (Q39635) Hypothetical 38.1 kDa protein| Length = 338 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +3 Query: 315 PFAWESREFLRKLCVGKEVTFRVDYTAPSIGREFGTVY 428 PF E++E L KL VGK +T + Y GR G +Y Sbjct: 240 PFGKEAKEELIKLVVGKCLTVHI-YEEDRYGRSVGDIY 276
>MTFA_MANSM (Q65U59) Putative RNA 2'-O-ribose methyltransferase mtfA (EC| 2.1.1.-) Length = 363 Score = 28.9 bits (63), Expect = 6.7 Identities = 15/51 (29%), Positives = 24/51 (47%) Frame = -2 Query: 458 HQVGNVLVAEVDSAKFSPDARSCVIHSECDLLSYAKFPQKLPAFPSKWLID 306 H G + D KF P RS + CD++ P ++ A +KWL++ Sbjct: 255 HDTGRIDHCPEDGFKFQPPKRSKIDWLVCDMVEQ---PIRIAALIAKWLVN 302
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 28.9 bits (63), Expect = 6.7 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = +3 Query: 114 AAG--QSQGAIMASNTGASGWLRGKVKAVTSGDCLLIMGS 227 AAG +S+GA + G RG K+ T+GDC GS Sbjct: 66 AAGGAESRGAALGGAADGEGPARGAAKSSTNGDCRRFRGS 105
>RIBD2_BUCAI (P57534) 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC| 1.1.1.193) (HTP reductase) Length = 207 Score = 28.5 bits (62), Expect = 8.7 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = -2 Query: 389 VIHSECDLLSYAKFPQKLPAFPSKWLIDSTTTSQPWGHKV*QSDGLLW 246 V + E D + + FP K+ P + +IDS QP H + ++ G +W Sbjct: 44 VRYKELDKKTLSIFPNKIFQHPIRVIIDSKNRVQP-SHNIIKTKGKIW 90
>KAPR_USTMA (P49605) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 522 Score = 28.5 bits (62), Expect = 8.7 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Frame = -3 Query: 322 ANGSSTPPRRASLGAIRYDRVMDFSGG----ISALVLPMMRRQSPEVTAFTLPLSHPEAP 155 A G ++P +RASL D +GG +++L +PM QSP+ T + P AP Sbjct: 78 APGLASPTQRASL--FHSDPFAPGAGGGALPVASLAVPMDASQSPDSTPAPATPAAPAAP 135 Query: 154 VFDAMIAPWDWPAASG 107 A AP+ SG Sbjct: 136 A--APAAPFSSLGGSG 149
>HGD_RHILO (Q983J4) Homogentisate 1,2-dioxygenase (EC 1.13.11.5)| (Homogentisicase) (Homogentisate oxygenase) (Homogentisic acid oxidase) Length = 457 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 8/67 (11%) Frame = -2 Query: 449 GNVLVAEVDSAKFSPDARSCVIHSECDLLSYAKFPQ--------KLPAFPSKWLIDSTTT 294 GN + D A FSP H + + + P FP +WL+ T Sbjct: 286 GNYAPYKYDLATFSPVGAILFDHPDPSIFTVLTAPSGEEGTANIDFVIFPPRWLVAEDTF 345 Query: 293 SQPWGHK 273 PW H+ Sbjct: 346 RPPWYHR 352 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,969,538 Number of Sequences: 219361 Number of extensions: 1389481 Number of successful extensions: 3873 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3758 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3861 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
