ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl28a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194512.1| Oryza sativa (japonica cultivar-group) putative... 222 8e-55
2gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome... 222 8e-55
3gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 222 8e-55
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 222 8e-55
5dbj|AK111158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 8e-55
6dbj|AK072615.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 8e-55
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 222 8e-55
8gb|AC124488.3| Mus musculus BAC clone RP23-452K20 from chromosom... 44 0.39
9ref|XM_508133.1| PREDICTED: Pan troglodytes similar to D1 dopami... 42 1.5
10gb|BC038978.1| Homo sapiens dopamine receptor D1 interacting pro... 42 1.5
11emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on ch... 42 1.5
12emb|CR606939.1| full-length cDNA clone CS0DF029YL04 of Fetal bra... 42 1.5
13ref|NM_015722.2| Homo sapiens dopamine receptor D1 interacting p... 42 1.5
14gb|AF225903.1|AF225903 Homo sapiens D1 dopamine receptor interac... 42 1.5
15gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.1
16ref|NM_183626.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
17ref|XM_480012.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
18ref|XM_475850.1| Oryza sativa (japonica cultivar-group), predic... 40 6.1
19ref|XM_470409.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
20gb|AC139231.11| Mus musculus chromosome 1, clone RP24-87I22, com... 40 6.1
21gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.1
22gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.1
24gb|AC114817.3| Mus musculus BAC clone RP23-28O15 from 14, comple... 40 6.1
25gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
26emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.1
27emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.1
28gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
29ref|XM_945444.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.1
30ref|XM_934623.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 6.1
31dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
32dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
33dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
34dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
35dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
37gb|DQ011069.1| Oreochromis mossambicus cytochrome c oxidase subu... 40 6.1
38gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E... 40 6.1
39dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
40gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom... 40 6.1
41gb|AC068769.19| Homo sapiens 3 BAC RP11-14I2 (Roswell Park Cance... 40 6.1
42gb|DQ119602.1| Amphisbaena cubana HOXA13 (HOXA13) gene, partial cds 40 6.1
43gb|DQ119596.1| Xantusia riversiana HOXA13 (HOXA13) gene, partial... 40 6.1
44gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genom... 40 6.1
45dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
46dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
47dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
48dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
49dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
50emb|BX465847.15| Mouse DNA sequence from clone RP23-102L14 on ch... 40 6.1
51dbj|AK121930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
52dbj|AK106850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
53gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.1
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
55emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 40 6.1
56gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3... 40 6.1 
>ref|NM_194512.1| Oryza sativa (japonica cultivar-group) putative maize transposon
           MuDR mudrA-like protein (OSJNBa0071K19.12), mRNA
          Length = 2814

 Score =  222 bits (112), Expect = 8e-55
 Identities = 232/272 (85%)
 Strand = Plus / Plus

                                                                       
Query: 183 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 242
           |||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 382 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 441

                                                                       
Query: 243 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 302
           ||||||||||| ||||||||||||||| | || |||||||| || || | ||||||||||
Sbjct: 442 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 501

                                                                       
Query: 303 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 362
           ||||||||||| ||||| |||||||| ||  | ||  ||||| | || ||||| || || 
Sbjct: 502 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 561

                                                                       
Query: 363 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 422
           ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| |||
Sbjct: 562 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 621

                                           
Query: 423 tttactgctagtgctgcccaagcagatgtttt 454
           |||||||||||| |||| ||||  ||||||||
Sbjct: 622 tttactgctagttctgcacaagtggatgtttt 653
to top
>gb|AC069324.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0071K19,
              complete sequence
          Length = 174752

 Score =  222 bits (112), Expect = 8e-55
 Identities = 232/272 (85%)
 Strand = Plus / Minus

                                                                          
Query: 183    gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 242
              |||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 108840 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 108781

                                                                          
Query: 243    ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 302
              ||||||||||| ||||||||||||||| | || |||||||| || || | ||||||||||
Sbjct: 108780 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 108721

                                                                          
Query: 303    gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 362
              ||||||||||| ||||| |||||||| ||  | ||  ||||| | || ||||| || || 
Sbjct: 108720 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 108661

                                                                          
Query: 363    aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 422
              ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| |||
Sbjct: 108660 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 108601

                                              
Query: 423    tttactgctagtgctgcccaagcagatgtttt 454
              |||||||||||| |||| ||||  ||||||||
Sbjct: 108600 tttactgctagttctgcacaagtggatgtttt 108569
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  222 bits (112), Expect = 8e-55
 Identities = 232/272 (85%)
 Strand = Plus / Minus

                                                                          
Query: 183    gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 242
              |||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 343782 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 343723

                                                                          
Query: 243    ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 302
              ||||||||||| ||||||||||||||| | || |||||||| || || | ||||||||||
Sbjct: 343722 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 343663

                                                                          
Query: 303    gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 362
              ||||||||||| ||||| |||||||| ||  | ||  ||||| | || ||||| || || 
Sbjct: 343662 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 343603

                                                                          
Query: 363    aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 422
              ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| |||
Sbjct: 343602 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 343543

                                              
Query: 423    tttactgctagtgctgcccaagcagatgtttt 454
              |||||||||||| |||| ||||  ||||||||
Sbjct: 343542 tttactgctagttctgcacaagtggatgtttt 343511
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score =  222 bits (112), Expect = 8e-55
 Identities = 232/272 (85%)
 Strand = Plus / Minus

                                                                          
Query: 183    gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 242
              |||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 343782 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 343723

                                                                          
Query: 243    ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 302
              ||||||||||| ||||||||||||||| | || |||||||| || || | ||||||||||
Sbjct: 343722 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 343663

                                                                          
Query: 303    gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 362
              ||||||||||| ||||| |||||||| ||  | ||  ||||| | || ||||| || || 
Sbjct: 343662 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 343603

                                                                          
Query: 363    aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 422
              ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| |||
Sbjct: 343602 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 343543

                                              
Query: 423    tttactgctagtgctgcccaagcagatgtttt 454
              |||||||||||| |||| ||||  ||||||||
Sbjct: 343542 tttactgctagttctgcacaagtggatgtttt 343511
to top
>dbj|AK111158.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H09, full
            insert sequence
          Length = 3614

 Score =  222 bits (112), Expect = 8e-55
 Identities = 232/272 (85%)
 Strand = Plus / Plus

                                                                        
Query: 183  gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 242
            |||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 835  gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 894

                                                                        
Query: 243  ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 302
            ||||||||||| ||||||||||||||| | || |||||||| || || | ||||||||||
Sbjct: 895  ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 954

                                                                        
Query: 303  gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 362
            ||||||||||| ||||| |||||||| ||  | ||  ||||| | || ||||| || || 
Sbjct: 955  gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 1014

                                                                        
Query: 363  aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 422
            ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| |||
Sbjct: 1015 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 1074

                                            
Query: 423  tttactgctagtgctgcccaagcagatgtttt 454
            |||||||||||| |||| ||||  ||||||||
Sbjct: 1075 tttactgctagttctgcacaagtggatgtttt 1106
to top
>dbj|AK072615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C11, full
           insert sequence
          Length = 3124

 Score =  222 bits (112), Expect = 8e-55
 Identities = 232/272 (85%)
 Strand = Plus / Plus

                                                                       
Query: 183 gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 242
           |||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 309 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 368

                                                                       
Query: 243 ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 302
           ||||||||||| ||||||||||||||| | || |||||||| || || | ||||||||||
Sbjct: 369 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 428

                                                                       
Query: 303 gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 362
           ||||||||||| ||||| |||||||| ||  | ||  ||||| | || ||||| || || 
Sbjct: 429 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 488

                                                                       
Query: 363 aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 422
           ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| |||
Sbjct: 489 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 548

                                           
Query: 423 tttactgctagtgctgcccaagcagatgtttt 454
           |||||||||||| |||| ||||  ||||||||
Sbjct: 549 tttactgctagttctgcacaagtggatgtttt 580
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  222 bits (112), Expect = 8e-55
 Identities = 232/272 (85%)
 Strand = Plus / Minus

                                                                          
Query: 183    gccatttgccaacatggtggggagttcacttctggtcccaatgggaatttgatttacaaa 242
              |||||||||||  ||||||| |||||||||||||| |||||||| |||||||| ||||||
Sbjct: 343779 gccatttgccagtatggtggagagttcacttctggccccaatggcaatttgatctacaaa 343720

                                                                          
Query: 243    ggaggagaagcgcacgctgttgacgtctctcgggagatgtcccttgacagcttcaaggat 302
              ||||||||||| ||||||||||||||| | || |||||||| || || | ||||||||||
Sbjct: 343719 ggaggagaagcacacgctgttgacgtcacacgagagatgtcactagataacttcaaggat 343660

                                                                          
Query: 303    gaggtgtccaaagtgttccatgttgatgtcaccgacatgtcattcaagtacttccttcca 362
              ||||||||||| ||||| |||||||| ||  | ||  ||||| | || ||||| || || 
Sbjct: 343659 gaggtgtccaaggtgtttcatgttgaggtttcagatgtgtcactgaaatactttctcccg 343600

                                                                          
Query: 363    aacaataacaggacgctcatcacaatctcctgcgatagagatttgcaacggatggttgat 422
              ||||||||||| || || |||||||| || || ||| ||||||||||||||||||| |||
Sbjct: 343599 aacaataacagaactcttatcacaatatcatgtgatcgagatttgcaacggatggtcgat 343540

                                              
Query: 423    tttactgctagtgctgcccaagcagatgtttt 454
              |||||||||||| |||| ||||  ||||||||
Sbjct: 343539 tttactgctagttctgcacaagtggatgtttt 343508
to top
>gb|AC124488.3| Mus musculus BAC clone RP23-452K20 from chromosome 1, complete sequence
          Length = 178446

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 343   cattcaagtacttccttccaaa 364
             ||||||||||||||||||||||
Sbjct: 88165 cattcaagtacttccttccaaa 88186
to top
>ref|XM_508133.1| PREDICTED: Pan troglodytes similar to D1 dopamine
           receptor-interacting protein calcyon (LOC450851), mRNA
          Length = 814

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  gcggcggcggcggccaccgaa 80
           |||||||||||||||||||||
Sbjct: 543 gcggcggcggcggccaccgaa 563
to top
>gb|BC038978.1| Homo sapiens dopamine receptor D1 interacting protein, mRNA (cDNA
           clone MGC:47621 IMAGE:5734358), complete cds
          Length = 921

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  gcggcggcggcggccaccgaa 80
           |||||||||||||||||||||
Sbjct: 609 gcggcggcggcggccaccgaa 629
to top
>emb|AL360181.37| Human DNA sequence from clone RP11-122K13 on chromosome 10 Contains the
             5' end of the TUBGCP2 gene for tubulin gamma complex
             associated protein 2, the gene for a novel protein, the
             gene for calcyon D1 dopamine receptor-interacting protein
             (CALCYON), an autointegration factor (BANF1) pseudogene, a
             novel gene, the gene for uterine-specific proline-rich
             acidic protein (UPA), gene FLJ34392, the ECHS1 gene for
             enoyl Coenzyme A hydratase, short chain, 1, mitachondrial,
             the gene for peroxisomal N1-acetyl-spermine/spermidine
             oxidase (PAO), a novel gene, the 5' end of a novel gene
             (LOC92170) and ten CpG islands, complete sequence
          Length = 116311

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 60    gcggcggcggcggccaccgaa 80
             |||||||||||||||||||||
Sbjct: 33444 gcggcggcggcggccaccgaa 33424
to top
>emb|CR606939.1| full-length cDNA clone CS0DF029YL04 of Fetal brain of Homo sapiens
           (human)
          Length = 922

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  gcggcggcggcggccaccgaa 80
           |||||||||||||||||||||
Sbjct: 651 gcggcggcggcggccaccgaa 671
to top
>ref|NM_015722.2| Homo sapiens dopamine receptor D1 interacting protein (DRD1IP),
           mRNA
          Length = 915

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  gcggcggcggcggccaccgaa 80
           |||||||||||||||||||||
Sbjct: 645 gcggcggcggcggccaccgaa 665
to top
>gb|AF225903.1|AF225903 Homo sapiens D1 dopamine receptor interacting protein calcyon mRNA,
           complete cds
          Length = 915

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 60  gcggcggcggcggccaccgaa 80
           |||||||||||||||||||||
Sbjct: 645 gcggcggcggcggccaccgaa 665
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 59      cgcggcggcggcggccaccg 78
               ||||||||||||||||||||
Sbjct: 2007682 cgcggcggcggcggccaccg 2007701
to top
>ref|NM_183626.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  gcggcggcggcggccaccga 79
           ||||||||||||||||||||
Sbjct: 331 gcggcggcggcggccaccga 350
to top
>ref|XM_480012.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 804

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  gcggcggcggcggccaccga 79
           ||||||||||||||||||||
Sbjct: 129 gcggcggcggcggccaccga 148
to top
>ref|XM_475850.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   cgcggcggcggcggccaccg 78
            ||||||||||||||||||||
Sbjct: 1002 cgcggcggcggcggccaccg 983
to top
>ref|XM_470409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1698

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  gcggcggcggcggccaccga 79
           ||||||||||||||||||||
Sbjct: 221 gcggcggcggcggccaccga 202
to top
>gb|AC139231.11| Mus musculus chromosome 1, clone RP24-87I22, complete sequence
          Length = 191438

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   agatgtcccttgacagcttc 296
             ||||||||||||||||||||
Sbjct: 60129 agatgtcccttgacagcttc 60110
to top
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 59      cgcggcggcggcggccaccg 78
               ||||||||||||||||||||
Sbjct: 1317765 cgcggcggcggcggccaccg 1317746
to top
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03,
             complete sequence
          Length = 177861

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    cgcggcggcggcggccaccg 78
             ||||||||||||||||||||
Sbjct: 15058 cgcggcggcggcggccaccg 15039
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       gcggcggcggcggccaccga 79
                ||||||||||||||||||||
Sbjct: 35486467 gcggcggcggcggccaccga 35486448
to top
>gb|AC114817.3| Mus musculus BAC clone RP23-28O15 from 14, complete sequence
          Length = 211624

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    tgaggtgtccaaagtgttcc 321
              ||||||||||||||||||||
Sbjct: 167411 tgaggtgtccaaagtgttcc 167430
to top
>gb|AC130725.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0494H05,
             complete sequence
          Length = 141715

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    cgcggcggcggcggccaccg 78
             ||||||||||||||||||||
Sbjct: 90243 cgcggcggcggcggccaccg 90224
to top
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13
          Length = 349306

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     cgcggcggcggcggccaccg 78
              ||||||||||||||||||||
Sbjct: 284491 cgcggcggcggcggccaccg 284472
to top
>emb|BX248338.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
            5/14
          Length = 299450

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   cgcggcggcggcggccaccg 78
            ||||||||||||||||||||
Sbjct: 4928 cgcggcggcggcggccaccg 4909
to top
>gb|AC136492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0554F08,
              complete sequence
          Length = 166218

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     cgcggcggcggcggccaccg 78
              ||||||||||||||||||||
Sbjct: 114746 cgcggcggcggcggccaccg 114727
to top
>ref|XM_945444.1| PREDICTED: Homo sapiens hypothetical protein LOC652373
          (LOC652373), mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 gcggcggcggcggccaccga 79
          ||||||||||||||||||||
Sbjct: 47 gcggcggcggcggccaccga 66
to top
>ref|XM_934623.1| PREDICTED: Homo sapiens hypothetical protein LOC647263
          (LOC647263), mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 60 gcggcggcggcggccaccga 79
          ||||||||||||||||||||
Sbjct: 47 gcggcggcggcggccaccga 66
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 59      cgcggcggcggcggccaccg 78
               ||||||||||||||||||||
Sbjct: 2207820 cgcggcggcggcggccaccg 2207801
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      gcggcggcggcggccaccga 79
               ||||||||||||||||||||
Sbjct: 2197833 gcggcggcggcggccaccga 2197814
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       gcggcggcggcggccaccga 79
                ||||||||||||||||||||
Sbjct: 28765629 gcggcggcggcggccaccga 28765610



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       gcggcggcggcggccaccga 79
                ||||||||||||||||||||
Sbjct: 19745724 gcggcggcggcggccaccga 19745743
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 59       cgcggcggcggcggccaccg 78
                ||||||||||||||||||||
Sbjct: 27083662 cgcggcggcggcggccaccg 27083643
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       gcggcggcggcggccaccga 79
                ||||||||||||||||||||
Sbjct: 35576539 gcggcggcggcggccaccga 35576520
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       gcggcggcggcggccaccga 79
                ||||||||||||||||||||
Sbjct: 10664216 gcggcggcggcggccaccga 10664197
to top
>gb|DQ011069.1| Oreochromis mossambicus cytochrome c oxidase subunit Va
           preprotein-like mRNA, partial sequence
          Length = 306

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 284 ccttgacagcttcaaggatg 303
           ||||||||||||||||||||
Sbjct: 213 ccttgacagcttcaaggatg 232
to top
>gb|AC018818.5|AC018818 Homo sapiens chromosome 3 clone RP11-266E23 map 3p, complete sequence
          Length = 156335

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 366    aataacaggacgctcatcacaatc 389
              ||||||||||||||||||| ||||
Sbjct: 128091 aataacaggacgctcatcagaatc 128068
to top
>dbj|AP002482.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0706B05
          Length = 187835

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gcggcggcggcggccaccga 79
              ||||||||||||||||||||
Sbjct: 158839 gcggcggcggcggccaccga 158820
to top
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence,
            complete sequence
          Length = 133846

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   gcggcggcggcggccaccga 79
            ||||||||||||||||||||
Sbjct: 1159 gcggcggcggcggccaccga 1178
to top
>gb|AC068769.19| Homo sapiens 3 BAC RP11-14I2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191246

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     gcggcggcggcggccaccga 79
              ||||||||||||||||||||
Sbjct: 156766 gcggcggcggcggccaccga 156785
to top
>gb|DQ119602.1| Amphisbaena cubana HOXA13 (HOXA13) gene, partial cds
          Length = 402

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  gcggcggcggcggccaccga 79
           ||||||||||||||||||||
Sbjct: 380 gcggcggcggcggccaccga 361
to top
>gb|DQ119596.1| Xantusia riversiana HOXA13 (HOXA13) gene, partial cds
          Length = 394

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  gcggcggcggcggccaccga 79
           ||||||||||||||||||||
Sbjct: 372 gcggcggcggcggccaccga 353
to top
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete
             sequence
          Length = 145290

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gcggcggcggcggccaccga 79
             ||||||||||||||||||||
Sbjct: 19430 gcggcggcggcggccaccga 19411
to top
>dbj|AP003876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_D01
          Length = 97862

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gcggcggcggcggccaccga 79
             ||||||||||||||||||||
Sbjct: 76095 gcggcggcggcggccaccga 76076
to top
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0028E05
          Length = 157631

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gcggcggcggcggccaccga 79
             ||||||||||||||||||||
Sbjct: 73404 gcggcggcggcggccaccga 73385
to top
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0551A03
          Length = 173027

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    gcggcggcggcggccaccga 79
             ||||||||||||||||||||
Sbjct: 12769 gcggcggcggcggccaccga 12788
to top
>dbj|AP005723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0001B21
          Length = 143722

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     gcggcggcggcggccaccga 79
              ||||||||||||||||||||
Sbjct: 130180 gcggcggcggcggccaccga 130199
to top
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0622F03
          Length = 170064

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     gcggcggcggcggccaccga 79
              ||||||||||||||||||||
Sbjct: 166195 gcggcggcggcggccaccga 166176
to top
>emb|BX465847.15| Mouse DNA sequence from clone RP23-102L14 on chromosome X, complete
              sequence
          Length = 206399

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 234    atttacaaaggaggagaagc 253
              ||||||||||||||||||||
Sbjct: 135005 atttacaaaggaggagaagc 135024
to top
>dbj|AK121930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106K22, full
           insert sequence
          Length = 1916

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 60  gcggcggcggcggccaccga 79
           ||||||||||||||||||||
Sbjct: 227 gcggcggcggcggccaccga 208
to top
>dbj|AK106850.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A11, full
           insert sequence
          Length = 1617

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 60  gcggcggcggcggccaccga 79
           ||||||||||||||||||||
Sbjct: 553 gcggcggcggcggccaccga 572
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 59      cgcggcggcggcggccaccg 78
               ||||||||||||||||||||
Sbjct: 1363585 cgcggcggcggcggccaccg 1363566
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 59      cgcggcggcggcggccaccg 78
               ||||||||||||||||||||
Sbjct: 2215601 cgcggcggcggcggccaccg 2215582
to top
>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     cgcggcggcggcggccaccg 78
              ||||||||||||||||||||
Sbjct: 104514 cgcggcggcggcggccaccg 104495
to top
>gb|AC018495.5| Homo sapiens chromosome 3 clone RP11-193K15 map 3p, complete sequence
          Length = 173592

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 366   aataacaggacgctcatcacaatc 389
             ||||||||||||||||||| ||||
Sbjct: 42022 aataacaggacgctcatcagaatc 42045


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,825,387
Number of Sequences: 3902068
Number of extensions: 3825387
Number of successful extensions: 202370
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 198633
Number of HSP's gapped (non-prelim): 3730
length of query: 454
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 432
effective length of database: 17,147,199,772
effective search space: 7407590301504
effective search space used: 7407590301504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top