ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl28a01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476019.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3273 Score = 355 bits (179), Expect = 8e-95 Identities = 299/339 (88%) Strand = Plus / Plus Query: 88 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 147 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 9 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 68 Query: 148 cttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatcgagatcca 207 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 69 cttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatcgagatcca 128 Query: 208 cctcctcacgccgcagggcctccagccgatgctggacgtgcccatatatgggaggatcgc 267 | | || || || || ||||||||||| ||| | || || || || ||||| || ||||| Sbjct: 129 cttgcttactcctcaaggcctccagcctatgattgatgtacctatctatggaagaatcgc 188 Query: 268 gacgatcgagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacgga 327 || | ||||||||||||||||| |||||| | ||||||||||| |||||||| || || Sbjct: 189 cacactagagctcttccgccctcataatgagactcaggacttccttttcattgcgactga 248 Query: 328 gaggtacaagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatc 387 || ||||| ||||| || ||||||||||| | ||||||||| ||||||||||||||| | Sbjct: 249 aagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagc 308 Query: 388 catgggagatgtttctgatcgcatcggccgccctacgga 426 ||||||||||||||||||||||| || ||||||||||| Sbjct: 309 gatgggagatgtttctgatcgcattggtcgccctacgga 347
>dbj|AK067427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107E16, full insert sequence Length = 4136 Score = 355 bits (179), Expect = 8e-95 Identities = 299/339 (88%) Strand = Plus / Plus Query: 88 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 147 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 46 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 105 Query: 148 cttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatcgagatcca 207 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 106 cttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatcgagatcca 165 Query: 208 cctcctcacgccgcagggcctccagccgatgctggacgtgcccatatatgggaggatcgc 267 | | || || || || ||||||||||| ||| | || || || || ||||| || ||||| Sbjct: 166 cttgcttactcctcaaggcctccagcctatgattgatgtacctatctatggaagaatcgc 225 Query: 268 gacgatcgagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacgga 327 || | ||||||||||||||||| |||||| | ||||||||||| |||||||| || || Sbjct: 226 cacactagagctcttccgccctcataatgagactcaggacttccttttcattgcgactga 285 Query: 328 gaggtacaagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatc 387 || ||||| ||||| || ||||||||||| | ||||||||| ||||||||||||||| | Sbjct: 286 aagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagc 345 Query: 388 catgggagatgtttctgatcgcatcggccgccctacgga 426 ||||||||||||||||||||||| || ||||||||||| Sbjct: 346 gatgggagatgtttctgatcgcattggtcgccctacgga 384
>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full insert sequence Length = 3792 Score = 355 bits (179), Expect = 8e-95 Identities = 299/339 (88%) Strand = Plus / Plus Query: 88 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 147 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 125 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 184 Query: 148 cttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatcgagatcca 207 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 185 cttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatcgagatcca 244 Query: 208 cctcctcacgccgcagggcctccagccgatgctggacgtgcccatatatgggaggatcgc 267 | | || || || || ||||||||||| ||| | || || || || ||||| || ||||| Sbjct: 245 cttgcttactcctcaaggcctccagcctatgattgatgtacctatctatggaagaatcgc 304 Query: 268 gacgatcgagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacgga 327 || | ||||||||||||||||| |||||| | ||||||||||| |||||||| || || Sbjct: 305 cacactagagctcttccgccctcataatgagactcaggacttccttttcattgcgactga 364 Query: 328 gaggtacaagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatc 387 || ||||| ||||| || ||||||||||| | ||||||||| ||||||||||||||| | Sbjct: 365 aagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagc 424 Query: 388 catgggagatgtttctgatcgcatcggccgccctacgga 426 ||||||||||||||||||||||| || ||||||||||| Sbjct: 425 gatgggagatgtttctgatcgcattggtcgccctacgga 463
>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged DNA binding protein, complete cds Length = 3658 Score = 355 bits (179), Expect = 8e-95 Identities = 299/339 (88%) Strand = Plus / Plus Query: 88 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 147 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 125 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 184 Query: 148 cttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatcgagatcca 207 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 185 cttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatcgagatcca 244 Query: 208 cctcctcacgccgcagggcctccagccgatgctggacgtgcccatatatgggaggatcgc 267 | | || || || || ||||||||||| ||| | || || || || ||||| || ||||| Sbjct: 245 cttgcttactcctcaaggcctccagcctatgattgatgtacctatctatggaagaatcgc 304 Query: 268 gacgatcgagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacgga 327 || | ||||||||||||||||| |||||| | ||||||||||| |||||||| || || Sbjct: 305 cacactagagctcttccgccctcataatgagactcaggacttccttttcattgcgactga 364 Query: 328 gaggtacaagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatc 387 || ||||| ||||| || ||||||||||| | ||||||||| ||||||||||||||| | Sbjct: 365 aagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagc 424 Query: 388 catgggagatgtttctgatcgcatcggccgccctacgga 426 ||||||||||||||||||||||| || ||||||||||| Sbjct: 425 gatgggagatgtttctgatcgcattggtcgccctacgga 463
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 176 bits (89), Expect = 4e-41 Identities = 95/97 (97%) Strand = Plus / Plus Query: 88 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 147 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 70347 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 70406 Query: 148 cttcaccggcccccaccagctcaacctcatcgtcgcg 184 ||||||||||||| ||||||||||||||||||||||| Sbjct: 70407 cttcaccggccccaaccagctcaacctcatcgtcgcg 70443 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 293 aatgaggcccaggacttcctcttcattgccacggagaggtacaagttctgcgtcctgcag 352 |||||| | ||||||||||| |||||||| || || || ||||| ||||| || |||||| Sbjct: 71070 aatgagactcaggacttccttttcattgcgactgaaagatacaaattctgtgttctgcag 71129 Query: 353 tgggacgcagaaaaatcagagcttctcactag 384 ||||| | ||||||||| |||||||||||||| Sbjct: 71130 tgggatggagaaaaatcggagcttctcactag 71161 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 389 atgggagatgtttctgatcgcatcggccgccctacgga 426 ||||||||||||||||||||||| || ||||||||||| Sbjct: 71678 atgggagatgtttctgatcgcattggtcgccctacgga 71715 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 gaaatgcacccgcatcgagatccac 208 |||||||||||| |||||||||||| Sbjct: 70773 gaaatgcacccgtatcgagatccac 70797
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 176 bits (89), Expect = 4e-41 Identities = 95/97 (97%) Strand = Plus / Plus Query: 88 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 147 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 29291690 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 29291749 Query: 148 cttcaccggcccccaccagctcaacctcatcgtcgcg 184 ||||||||||||| ||||||||||||||||||||||| Sbjct: 29291750 cttcaccggccccaaccagctcaacctcatcgtcgcg 29291786 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 293 aatgaggcccaggacttcctcttcattgccacggagaggtacaagttctgcgtcctgcag 352 |||||| | ||||||||||| |||||||| || || || ||||| ||||| || |||||| Sbjct: 29292413 aatgagactcaggacttccttttcattgcgactgaaagatacaaattctgtgttctgcag 29292472 Query: 353 tgggacgcagaaaaatcagagcttctcactag 384 ||||| | ||||||||| |||||||||||||| Sbjct: 29292473 tgggatggagaaaaatcggagcttctcactag 29292504 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 389 atgggagatgtttctgatcgcatcggccgccctacgga 426 ||||||||||||||||||||||| || ||||||||||| Sbjct: 29293021 atgggagatgtttctgatcgcattggtcgccctacgga 29293058 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 184 gaaatgcacccgcatcgagatccac 208 |||||||||||| |||||||||||| Sbjct: 29292116 gaaatgcacccgtatcgagatccac 29292140
>ref|NM_116781.2| Arabidopsis thaliana DDB1A; DNA binding / nucleic acid binding AT4G05420 (DDB1A) mRNA, complete cds Length = 3714 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 80 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 139 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 168 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 227 Query: 140 gtcggcaacttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatc 199 || ||||||||||| | || || ||||||| ||||| ||||||||||| || || ||| Sbjct: 228 gttggcaacttcacaagtcctcaagagctcaatctcattgtcgcgaaatgtactcgaatc 287 Query: 200 gagatcca 207 |||||||| Sbjct: 288 gagatcca 295
>gb|AY074258.1| Arabidopsis thaliana At4g05420 mRNA sequence Length = 1988 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 80 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 139 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 123 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 182 Query: 140 gtcggcaacttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatc 199 || ||||||||||| | || || ||||||| ||||| ||||||||||| || || ||| Sbjct: 183 gttggcaacttcacaagtcctcaagagctcaatctcattgtcgcgaaatgtactcgaatc 242 Query: 200 gagatcca 207 |||||||| Sbjct: 243 gagatcca 250
>gb|BT001905.1| Arabidopsis thaliana clone C104978 putative UV-damaged DNA binding factor (At4g05420) mRNA, complete cds Length = 3298 Score = 71.9 bits (36), Expect = 2e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 80 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 139 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 1 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 60 Query: 140 gtcggcaacttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatc 199 || ||||||||||| | || || ||||||| ||||| ||||||||||| || || ||| Sbjct: 61 gttggcaacttcacaagtcctcaagagctcaatctcattgtcgcgaaatgtactcgaatc 120 Query: 200 gagatcca 207 |||||||| Sbjct: 121 gagatcca 128
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 87 cgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggca 146 ||||||||||||| |||||||||||||||| || |||| || |||||||||||||| Sbjct: 22752239 cgtggaactacgtggtgacggcgcacaagctgacggtcgtcgcccgctcctgcgtcggca 22752298 Query: 147 acttcaccg 155 ||||||||| Sbjct: 22752299 acttcaccg 22752307
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 87 cgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggca 146 ||||||||||||| |||||||||||||||| || |||| || |||||||||||||| Sbjct: 128951 cgtggaactacgtggtgacggcgcacaagctgacggtcgtcgcccgctcctgcgtcggca 129010 Query: 147 acttcaccg 155 ||||||||| Sbjct: 129011 acttcaccg 129019
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 87 cgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggca 146 ||||||||||||| |||||||||||||||| || |||| || |||||||||||||| Sbjct: 69628 cgtggaactacgtggtgacggcgcacaagctgacggtcgtcgcccgctcctgcgtcggca 69687 Query: 147 acttcaccg 155 ||||||||| Sbjct: 69688 acttcaccg 69696
>dbj|AK103584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B01, full insert sequence Length = 663 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 87 cgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggca 146 ||||||||||||| |||||||||||||||| || |||| || |||||||||||||| Sbjct: 146 cgtggaactacgtggtgacggcgcacaagctgacggtcgtcgcccgctcctgcgtcggca 205 Query: 147 acttcaccg 155 ||||||||| Sbjct: 206 acttcaccg 214
>emb|AL161503.2|ATCHRIV15 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 15 Length = 199987 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 80 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 139 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 84740 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 84799 Query: 140 gtcggcaacttcac 153 || ||||||||||| Sbjct: 84800 gttggcaacttcac 84813
>gb|AC012477.1|AC012477 Genomic Sequence For Arabidopsis thaliana Clone C6L9, Chromosome IV, complete sequence Length = 145453 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 80 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 139 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 30554 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 30495 Query: 140 gtcggcaacttcac 153 || ||||||||||| Sbjct: 30494 gttggcaacttcac 30481
>gb|AY452480.1| Lycopersicon esculentum UV damaged DNA binding protein 1 (DDB1) mRNA, complete cds Length = 3273 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 gtgcccatatatgggaggatcgcgac 270 ||||| |||||||||||||||||||| Sbjct: 166 gtgccaatatatgggaggatcgcgac 191
>gb|AY531661.1| Lycopersicon cheesmanii UV-damaged DNA binding protein 1 (hp1) gene, promoter and complete cds Length = 23464 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 gtgcccatatatgggaggatcgcgac 270 ||||| |||||||||||||||||||| Sbjct: 7520 gtgccaatatatgggaggatcgcgac 7545
>gb|AY531660.1| Lycopersicon esculentum UV-damaged DNA binding protein 1 (hp1) mRNA, complete cds Length = 3454 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 gtgcccatatatgggaggatcgcgac 270 ||||| |||||||||||||||||||| Sbjct: 218 gtgccaatatatgggaggatcgcgac 243
>gb|AC161106.13| Medicago truncatula clone mth2-168f23, complete sequence Length = 94766 Score = 44.1 bits (22), Expect = 0.37 Identities = 55/66 (83%) Strand = Plus / Minus Query: 89 tggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaac 148 ||||||||||| || || || ||||| || |||| ||| | ||||||||||||||||| Sbjct: 10693 tggaactacgttgttaccgctcacaaacctaccaacgttactcactcctgcgtcggcaat 10634 Query: 149 ttcacc 154 |||||| Sbjct: 10633 ttcacc 10628
>gb|AC167930.2| Mycosphaerella graminicola clone JGIBBWB-9O6, complete sequence Length = 29883 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 atctctcctaccacctctcc 20 |||||||||||||||||||| Sbjct: 3533 atctctcctaccacctctcc 3552
>ref|XM_756092.1| Ustilago maydis 521 hypothetical protein (UM05038.1) partial mRNA Length = 3393 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 agaggtacaagttctgcgtc 346 |||||||||||||||||||| Sbjct: 3187 agaggtacaagttctgcgtc 3168
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 agggcctccagccgatgctggacg 245 ||||| |||||||||||||||||| Sbjct: 2141500 agggcatccagccgatgctggacg 2141477
>gb|AC126248.3| Mus musculus BAC clone RP24-422C6 from chromosome 3, complete sequence Length = 192092 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tctcctaccacctctccacc 23 |||||||||||||||||||| Sbjct: 56842 tctcctaccacctctccacc 56823
>gb|AC126557.3| Mus musculus BAC clone RP23-201J9 from 3, complete sequence Length = 176278 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 tctcctaccacctctccacc 23 |||||||||||||||||||| Sbjct: 149120 tctcctaccacctctccacc 149101
>emb|CR731415.2|CNS0GRB0 Tetraodon nigroviridis full-length cDNA Length = 1171 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 479 cccaccagctcaacctcatc 498
>emb|CR711553.2|CNS0GBZH Tetraodon nigroviridis full-length cDNA Length = 868 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 466 cccaccagctcaacctcatc 485
>emb|CR711538.2|CNS0GBZ2 Tetraodon nigroviridis full-length cDNA Length = 828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 455 cccaccagctcaacctcatc 474
>emb|CR725308.2|CNS0GMLE Tetraodon nigroviridis full-length cDNA Length = 1155 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 464 cccaccagctcaacctcatc 483
>emb|CR725524.2|CNS0GMRE Tetraodon nigroviridis full-length cDNA Length = 1170 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 479 cccaccagctcaacctcatc 498
>emb|CR720140.2|CNS0GILU Tetraodon nigroviridis full-length cDNA Length = 1155 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 464 cccaccagctcaacctcatc 483
>emb|CR723464.2|CNS0GL66 Tetraodon nigroviridis full-length cDNA Length = 1128 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 450 cccaccagctcaacctcatc 469
>emb|CR722209.2|CNS0GK7B Tetraodon nigroviridis full-length cDNA Length = 828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 455 cccaccagctcaacctcatc 474
>emb|CR722001.2|CNS0GK1J Tetraodon nigroviridis full-length cDNA Length = 830 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 460 cccaccagctcaacctcatc 479
>emb|CR721896.2|CNS0GJYM Tetraodon nigroviridis full-length cDNA Length = 852 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 480 cccaccagctcaacctcatc 499
>emb|CR721435.2|CNS0GJLT Tetraodon nigroviridis full-length cDNA Length = 853 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 480 cccaccagctcaacctcatc 499
>emb|CR721410.2|CNS0GJL4 Tetraodon nigroviridis full-length cDNA Length = 855 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 482 cccaccagctcaacctcatc 501
>emb|CR720800.2|CNS0GJ46 Tetraodon nigroviridis full-length cDNA Length = 834 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 461 cccaccagctcaacctcatc 480
>emb|CR720362.2|CNS0GIS0 Tetraodon nigroviridis full-length cDNA Length = 759 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 387 cccaccagctcaacctcatc 406
>emb|CR719170.2|CNS0GHUW Tetraodon nigroviridis full-length cDNA Length = 853 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 480 cccaccagctcaacctcatc 499
>emb|CR718317.2|CNS0GH77 Tetraodon nigroviridis full-length cDNA Length = 828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 455 cccaccagctcaacctcatc 474
>emb|CR718205.2|CNS0GH43 Tetraodon nigroviridis full-length cDNA Length = 828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 455 cccaccagctcaacctcatc 474
>emb|CR718053.2|CNS0GGZV Tetraodon nigroviridis full-length cDNA Length = 562 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 189 cccaccagctcaacctcatc 208
>emb|CR717399.2|CNS0GGHP Tetraodon nigroviridis full-length cDNA Length = 829 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 456 cccaccagctcaacctcatc 475
>emb|CR717236.2|CNS0GGD7 Tetraodon nigroviridis full-length cDNA Length = 829 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 456 cccaccagctcaacctcatc 475
>emb|CR716642.2|CNS0GFWR Tetraodon nigroviridis full-length cDNA Length = 864 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 489 cccaccagctcaacctcatc 508
>emb|CR716290.2|CNS0GFMZ Tetraodon nigroviridis full-length cDNA Length = 867 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 494 cccaccagctcaacctcatc 513
>emb|CR715062.2|CNS0GEOY Tetraodon nigroviridis full-length cDNA Length = 867 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 494 cccaccagctcaacctcatc 513
>emb|CR711341.2|CNS0GBTL Tetraodon nigroviridis full-length cDNA Length = 861 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 488 cccaccagctcaacctcatc 507
>emb|CR714212.2|CNS0GE1C Tetraodon nigroviridis full-length cDNA Length = 853 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 480 cccaccagctcaacctcatc 499
>emb|CR714547.2|CNS0GEAN Tetraodon nigroviridis full-length cDNA Length = 828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 455 cccaccagctcaacctcatc 474
>emb|CR710701.2|CNS0GBBT Tetraodon nigroviridis full-length cDNA Length = 861 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 488 cccaccagctcaacctcatc 507
>emb|CR709662.2|CNS0GAIY Tetraodon nigroviridis full-length cDNA Length = 836 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 488 cccaccagctcaacctcatc 507
>emb|CR707849.2|CNS0G94L Tetraodon nigroviridis full-length cDNA Length = 853 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 480 cccaccagctcaacctcatc 499
>emb|CR705121.2|CNS0G70T Tetraodon nigroviridis full-length cDNA Length = 829 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 456 cccaccagctcaacctcatc 475
>emb|CR694395.2|CNS0FYQV Tetraodon nigroviridis full-length cDNA Length = 1152 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 461 cccaccagctcaacctcatc 480
>emb|CR684880.2|CNS0FREK Tetraodon nigroviridis full-length cDNA Length = 1282 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 456 cccaccagctcaacctcatc 475
>emb|CR679778.2|CNS0FNGU Tetraodon nigroviridis full-length cDNA Length = 1181 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 490 cccaccagctcaacctcatc 509
>emb|CR673578.2|CNS0FIPC Tetraodon nigroviridis full-length cDNA Length = 1182 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 491 cccaccagctcaacctcatc 510
>emb|CR666822.2|CNS0FDHO Tetraodon nigroviridis full-length cDNA Length = 851 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 480 cccaccagctcaacctcatc 499
>emb|CR654814.2|CNS0F484 Tetraodon nigroviridis full-length cDNA Length = 851 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 478 cccaccagctcaacctcatc 497
>emb|CR651687.2|CNS0F1T9 Tetraodon nigroviridis full-length cDNA Length = 776 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 403 cccaccagctcaacctcatc 422
>emb|CR651566.2|CNS0F1PW Tetraodon nigroviridis full-length cDNA Length = 829 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 456 cccaccagctcaacctcatc 475
>emb|CR649464.2|CNS0F03I Tetraodon nigroviridis full-length cDNA Length = 835 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 462 cccaccagctcaacctcatc 481
>emb|CR646110.2|CNS0EXIC Tetraodon nigroviridis full-length cDNA Length = 752 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 379 cccaccagctcaacctcatc 398
>emb|CR641926.2|CNS0EUA4 Tetraodon nigroviridis full-length cDNA Length = 427 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 54 cccaccagctcaacctcatc 73
>emb|CR641209.2|CNS0ETQ7 Tetraodon nigroviridis full-length cDNA Length = 861 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 488 cccaccagctcaacctcatc 507
>emb|CR636997.2|CNS0EQH7 Tetraodon nigroviridis full-length cDNA Length = 1155 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 cccaccagctcaacctcatc 178 |||||||||||||||||||| Sbjct: 464 cccaccagctcaacctcatc 483
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 142 cggcaacttcaccggcccccacca 165 ||||||| |||||||||||||||| Sbjct: 2974557 cggcaacatcaccggcccccacca 2974580
>gb|AC027309.3| Homo sapiens chromosome 5 clone CTB-79E8, complete sequence Length = 189479 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 cagagcccagaaccctcctcctcc 53 ||||||||||||||||||| |||| Sbjct: 32900 cagagcccagaaccctccttctcc 32877
>gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complete sequence Length = 240957 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 30 cagagcccagaaccctcctcctcc 53 ||||||||||||||||||| |||| Sbjct: 232583 cagagcccagaaccctccttctcc 232560
>emb|AJ622830.1| Ustilago maydis acu2 gene for K, P-type ATPase Length = 3393 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 agaggtacaagttctgcgtc 346 |||||||||||||||||||| Sbjct: 3187 agaggtacaagttctgcgtc 3168
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 cggcgcacaagcccaccagc 124 |||||||||||||||||||| Sbjct: 7024631 cggcgcacaagcccaccagc 7024650
>gb|U17352.1|TAU17352 Thermus aquaticus L-glutamine:D-fructose-6-P amidotransferase (glmS) gene, complete cds and s-layer P100 (slp) gene, partial cds Length = 2560 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aggcccaggacttcctcttc 316 |||||||||||||||||||| Sbjct: 1910 aggcccaggacttcctcttc 1929
>emb|CT573045.6| Pig DNA sequence from clone CH242-519K3 on chromosome 17, complete sequence Length = 105913 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 ccagaaccctcctcctcctc 55 |||||||||||||||||||| Sbjct: 12671 ccagaaccctcctcctcctc 12652 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,514,850 Number of Sequences: 3902068 Number of extensions: 3514850 Number of successful extensions: 72086 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71812 Number of HSP's gapped (non-prelim): 267 length of query: 432 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 410 effective length of database: 17,147,199,772 effective search space: 7030351906520 effective search space used: 7030351906520 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
