ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27h12 |
|---|---|
| Clone Library Name | barley_pub |
>REL_HUMAN (Q04864) C-Rel proto-oncogene protein (C-Rel protein)| Length = 619 Score = 34.3 bits (77), Expect = 0.093 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%) Frame = +1 Query: 10 LPSSSWTSLAD*SPNSPQIPPLS----REIPNLAHGRRPWCRAP 129 LPSSSW+S+A +P S PLS R +P+ + G P+ R P Sbjct: 407 LPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIP 450
>RS14_RAT (P13471) 40S ribosomal protein S14| Length = 150 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 102 NRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_MOUSE (P62264) 40S ribosomal protein S14| Length = 150 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 102 NRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_HUMAN (P62263) 40S ribosomal protein S14| Length = 150 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 102 NRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_CRIGR (P62265) 40S ribosomal protein S14| Length = 150 Score = 30.4 bits (67), Expect = 1.3 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P S +R AR G +GRI S S R GGRR Sbjct: 102 NRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146
>RS14_KLULA (P27069) 40S ribosomal protein S14 (RP59)| Length = 137 Score = 29.6 bits (65), Expect = 2.3 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +RS TP P + +R AR G +GRI S S R GGRR Sbjct: 89 TRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133
>RS14_CHLRE (P46295) 40S ribosomal protein S14| Length = 153 Score = 28.9 bits (63), Expect = 3.9 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P S +R AR G +GRI + S R GGRR Sbjct: 105 NRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRR 149
>RS14A_YEAST (P06367) 40S ribosomal protein S14-A (RP59A)| Length = 136 Score = 28.5 bits (62), Expect = 5.1 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P + +R AR G +GRI S S R GGRR Sbjct: 88 TRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 132
>RS14_PROCL (P48855) 40S ribosomal protein S14| Length = 151 Score = 28.5 bits (62), Expect = 5.1 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +++ TP P S +R AR G +GRI S S R GGRR Sbjct: 103 NKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDSTRRKGGRR 147
>RS14_PODCA (Q08699) 40S ribosomal protein S14| Length = 151 Score = 28.5 bits (62), Expect = 5.1 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P S +R AR G +GRI S R GGRR Sbjct: 103 NRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCTRRKGGRR 147
>RS14B_YEAST (P39516) 40S ribosomal protein S14-B (RP59B)| Length = 137 Score = 28.5 bits (62), Expect = 5.1 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P + +R AR G +GRI S S R GGRR Sbjct: 89 TRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133
>TRAM4_ECOLI (Q00186) Protein traM| Length = 144 Score = 28.5 bits (62), Expect = 5.1 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 121 DTMASSREQDSGFREKGEGFGENWGFNQRAKSRRKKGGA 5 D+ A E + F+E+ EG WG + +AK+ R A Sbjct: 38 DSAAKQEEILAAFKEELEGIAHRWGEDAKAKAERMLNAA 76
>RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1)| Length = 149 Score = 28.1 bits (61), Expect = 6.7 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 101 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 145
>RS14_CAEEL (P48150) 40S ribosomal protein S14| Length = 152 Score = 28.1 bits (61), Expect = 6.7 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +R+ TP P S +R AR G +GRI S R GGRR Sbjct: 104 TRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCTRRKGGRR 148
>RS143_ARATH (P42036) 40S ribosomal protein S14-3| Length = 150 Score = 28.1 bits (61), Expect = 6.7 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2)| Length = 150 Score = 28.1 bits (61), Expect = 6.7 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 146
>RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2| Length = 150 Score = 28.1 bits (61), Expect = 6.7 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1| Length = 150 Score = 28.1 bits (61), Expect = 6.7 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +++ TP P S +R AR G +GRI + S R GGRR Sbjct: 102 NKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146
>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor| Length = 297 Score = 28.1 bits (61), Expect = 6.7 Identities = 13/36 (36%), Positives = 14/36 (38%) Frame = +1 Query: 46 SPNSPQIPPLSREIPNLAHGRRPWCRAPTPTCLTWP 153 +P PP R P P CR PTC T P Sbjct: 63 TPKCETTPPTCRTEPPTCKTEPPTCRTEPPTCKTKP 98 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/35 (37%), Positives = 14/35 (40%) Frame = +1 Query: 49 PNSPQIPPLSREIPNLAHGRRPWCRAPTPTCLTWP 153 P PP R P + P CR PTC T P Sbjct: 78 PTCKTEPPTCRTEPPTCKTKPPTCRTEPPTCRTEP 112
>RS14_CANAL (Q96W53) 40S ribosomal protein S14| Length = 134 Score = 28.1 bits (61), Expect = 6.7 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -2 Query: 132 SRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 13 +++ TP P S +R AR G +GRI S S R GGRR Sbjct: 86 TKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDSTRRKGGRR 130
>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101| Length = 613 Score = 27.7 bits (60), Expect = 8.7 Identities = 15/43 (34%), Positives = 16/43 (37%) Frame = +1 Query: 1 DRRLPSSSWTSLAD*SPNSPQIPPLSREIPNLAHGRRPWCRAP 129 D P SS + D P SPQ PP P P R P Sbjct: 569 DNESPQSSHSDAMDVDPKSPQAPPRELGTPREGSSLYPILRMP 611
>UBP2_YEAST (Q01476) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)| (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) Length = 1272 Score = 27.7 bits (60), Expect = 8.7 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 80 RERGGIWGELGLQSASEVQEEE 15 R R GIW + ++ SEVQEEE Sbjct: 1217 RNRNGIWRKYNDETISEVQEEE 1238
>SYE2_HELPY (O25360) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1.-) (GluGlnRS)| (Glutamyl-tRNA synthetase 2) (Glutamate--tRNA ligase 2) (GluRS 2) Length = 439 Score = 27.7 bits (60), Expect = 8.7 Identities = 14/24 (58%), Positives = 14/24 (58%) Frame = +2 Query: 62 KSLPFLAKSRILLTGGGHGVELLL 133 K F RILLTG HGVEL L Sbjct: 399 KGKDFFKPLRILLTGNSHGVELPL 422
>SYE2_HELPJ (Q9ZLJ1) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1.-) (GluGlnRS)| (Glutamyl-tRNA synthetase 2) (Glutamate--tRNA ligase 2) (GluRS 2) Length = 439 Score = 27.7 bits (60), Expect = 8.7 Identities = 14/24 (58%), Positives = 14/24 (58%) Frame = +2 Query: 62 KSLPFLAKSRILLTGGGHGVELLL 133 K F RILLTG HGVEL L Sbjct: 399 KGKDFFKPLRILLTGNSHGVELPL 422
>RS14_NEUCR (P19115) 40S ribosomal protein S14 (CRP2)| Length = 150 Score = 27.7 bits (60), Expect = 8.7 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 5/41 (12%) Frame = -2 Query: 120 TPWPPPVSKIRDFARKGRDLGRI-----GASISERSPGGRR 13 TP P S +R AR G +GRI S S R GGRR Sbjct: 106 TPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRRKGGRR 146
>DHRS3_HUMAN (O75911) Short-chain dehydrogenase/reductase 3 (EC 1.1.-.-)| (Retinal short-chain dehydrogenase/reductase 1) (retSDR1) (DD83.1) Length = 302 Score = 27.7 bits (60), Expect = 8.7 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 53 ILPKSLPFLAKSRILLTGGGHGV 121 +LP L L++ +L+TGGG G+ Sbjct: 28 VLPAKLRDLSRENVLITGGGRGI 50
>DHRS3_BOVIN (O77769) Short-chain dehydrogenase/reductase 3 (EC 1.1.-.-)| (Retinal short-chain dehydrogenase/reductase 1) (retSDR1) Length = 302 Score = 27.7 bits (60), Expect = 8.7 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +2 Query: 53 ILPKSLPFLAKSRILLTGGGHGV 121 +LP L L++ +L+TGGG G+ Sbjct: 28 VLPAKLRDLSRENVLITGGGRGI 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,468,655 Number of Sequences: 219361 Number of extensions: 401679 Number of successful extensions: 1712 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1649 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1711 length of database: 80,573,946 effective HSP length: 39 effective length of database: 72,018,867 effective search space used: 1728452808 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
