ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27h10 |
|---|---|
| Clone Library Name | barley_pub |
>CSE1_DROME (Q9XZU1) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 975 Score = 36.6 bits (83), Expect = 0.027 Identities = 24/88 (27%), Positives = 33/88 (37%), Gaps = 1/88 (1%) Frame = +3 Query: 120 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 299 MEV L LAG+ QTLS D + + D+ R Sbjct: 1 MEVTEANLQLLAGYLQQTLSADPNVRRPAEKLLESTELQQNYPILLLNLIDKAQMDMTTR 60 Query: 300 LAASVHFKNLLRRRWPKPAD-DADDGDH 380 +A ++ FKN ++R W D D D H Sbjct: 61 VAGAIAFKNYIKRNWAAHLDSDGPDRIH 88
>CSE1_ARATH (Q9ZPY7) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 972 Score = 35.8 bits (81), Expect = 0.046 Identities = 27/82 (32%), Positives = 33/82 (40%) Frame = +3 Query: 120 MEVPPEMLDTLAGWFAQTLSPDXXXXXXXXXXXXXXXXTPGFXXXXXXXXSSPRHDLQAR 299 ME E L L+ F TLSP + + P D Q R Sbjct: 1 MEWNRETLVFLSQCFLNTLSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTR 60 Query: 300 LAASVHFKNLLRRRWPKPADDA 365 AA+V+FKN LR RW PA D+ Sbjct: 61 HAAAVNFKNHLRSRW-HPAGDS 81
>CSE1_YEAST (P33307) Importin alpha re-exporter (Chromosome segregation protein| CSE1) Length = 960 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = +3 Query: 240 GFXXXXXXXXSSPRHDLQARLAASVHFKNLLRRRWPKPADDADDGDHLPP 389 GF +S L RLA ++ FKN ++R+W ++G+HL P Sbjct: 35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD-----ENGNHLLP 79
>VPE_RICCO (P49042) Vacuolar processing enzyme precursor (EC 3.4.22.-) (VPE)| Length = 497 Score = 31.2 bits (69), Expect = 1.1 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -3 Query: 430 QELEDVRLDDDAVVGGRWSPSSASSAGLGQRRRR 329 +E E V++DDD +G RW+ A S G G R + Sbjct: 46 EEAEPVQVDDDDQLGTRWAVLVAGSMGFGNYRHQ 79
>SSDH_PONPY (Q6A2H2) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 30.0 bits (66), Expect = 2.5 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 14/67 (20%) Frame = -3 Query: 409 LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEAARRAWRSWRGE 272 L D+ VGGRW P++ AS A LG R R ++ AA A+ SWR Sbjct: 59 LRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---AAYEAFCSWREV 115 Query: 271 EARPRSA 251 A+ RS+ Sbjct: 116 SAKERSS 122
>SSDH_HYLLA (Q3MSM3) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 30.0 bits (66), Expect = 2.5 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 14/67 (20%) Frame = -3 Query: 409 LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEAARRAWRSWRGE 272 L D+ VGGRW P++ AS A LG R R ++ AA A+ SWR Sbjct: 59 LRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---AAYEAFCSWREV 115 Query: 271 EARPRSA 251 A+ RS+ Sbjct: 116 SAKERSS 122
>GUN3_BACSU (P23549) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 29.6 bits (65), Expect = 3.3 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 379 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 236 W S AS + G+ + R +LK+ ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>GUN2_BACSU (P10475) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Carboxymethyl-cellulase) (CMCASE) (Cellulase) Length = 499 Score = 29.6 bits (65), Expect = 3.3 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = -3 Query: 379 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 236 W S AS + G+ + R +LK+ ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLKYLDSKTISWVNWNLSDKQESSSALKPG 306
>CSE1_SCHPO (O13671) Importin-alpha re-exporter (Cellular apoptosis| susceptibility protein homolog) Length = 967 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/30 (36%), Positives = 21/30 (70%) Frame = +3 Query: 285 DLQARLAASVHFKNLLRRRWPKPADDADDG 374 D+ +LAAS++FKN +++ W D+++G Sbjct: 48 DINIKLAASLYFKNYIKKHW-----DSEEG 72
>GUN1_BACSU (P07983) Endoglucanase precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) Length = 499 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -3 Query: 379 WSPSSAS-SAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSASAKPG 236 W S AS + G+ + R +L + ++ +W +W + + S++ KPG Sbjct: 258 WGTSDASGNGGVFLDQSREWLNYLDSKNISWVNWNLSDKQESSSALKPG 306
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 28.1 bits (61), Expect = 9.7 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = -3 Query: 400 DAVVGGRWSPSSASSAGLGQRRRRRFLKWTEAARRAWRSWRGEEARPRSAS 248 DA RWSP+ S +RR R L+ + + RR RS R + RS S Sbjct: 429 DASPINRWSPTRRRSRSPIRRRSRSPLRRSRSPRRRSRSPRRRDRSRRSKS 479
>SSDH_PANTR (Q6A2H0) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 14/67 (20%) Frame = -3 Query: 409 LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEAARRAWRSWRGE 272 L D+ VGGRW P++ AS A LG R R ++ AA A+ WR Sbjct: 59 LRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---AAYEAFCRWREV 115 Query: 271 EARPRSA 251 A+ RS+ Sbjct: 116 SAKERSS 122
>SSDH_PANPA (Q3MSM4) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 14/67 (20%) Frame = -3 Query: 409 LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEAARRAWRSWRGE 272 L D+ VGGRW P++ AS A LG R R ++ AA A+ WR Sbjct: 59 LRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---AAYEAFCCWREV 115 Query: 271 EARPRSA 251 A+ RS+ Sbjct: 116 SAKERSS 122
>SSDH_HUMAN (P51649) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 14/67 (20%) Frame = -3 Query: 409 LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEAARRAWRSWRGE 272 L D+ VGGRW P++ AS A LG R R ++ AA A+ WR Sbjct: 59 LRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---AAYEAFCRWREV 115 Query: 271 EARPRSA 251 A+ RS+ Sbjct: 116 SAKERSS 122
>SSDH_GORGO (Q6A2H1) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 28.1 bits (61), Expect = 9.7 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 14/67 (20%) Frame = -3 Query: 409 LDDDAVVGGRWSPSS--------ASSAGLGQ------RRRRRFLKWTEAARRAWRSWRGE 272 L D+ VGGRW P++ AS A LG R R ++ AA A+ WR Sbjct: 59 LRTDSFVGGRWLPAAATFPVQDPASGAALGMVADCGVREARAAVR---AAYEAFCRWREV 115 Query: 271 EARPRSA 251 A+ RS+ Sbjct: 116 SAKERSS 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,376,492 Number of Sequences: 219361 Number of extensions: 403569 Number of successful extensions: 1667 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1665 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
