>HXA5_MOUSE (P09021) Homeobox protein Hox-A5 (Hox-1.3) (M2)|
          Length = 270

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 26/75 (34%), Positives = 33/75 (44%)
 Frame = -2

Query: 365 PACDSYEGGYNLGGIGAAVSAQVGKRS*LVSAA*SGQSETAAAACLSRGGKIQSTSAASE 186
           P  DS+ GG N  G  +  SA  G    + S    G   TA+AA        +   A SE
Sbjct: 110 PGSDSHHGGKNSLGNSSGASANAGSTH-ISSREGVG---TASAAEEDAPASSEQAGAQSE 165

Query: 185 INPAPPEIQPRFLSW 141
            +PAPP  QP+   W
Sbjct: 166 PSPAPP-AQPQIYPW 179

>HXA5_HUMAN (P20719) Homeobox protein Hox-A5 (Hox-1C)|
          Length = 270

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = -2

Query: 365 PACDSYEGGYNL-----GGIGAAVSAQVGKRS*LVSAA*SGQSETAAAACLSRGGKIQST 201
           P  DS+ GG N      G    A S  +  R  + +A  SG  E A A+        +  
Sbjct: 110 PGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTA--SGAEEDAPASS-------EQA 160

Query: 200 SAASEINPAPPEIQPRFLSW 141
           SA SE +PAPP  QP+   W
Sbjct: 161 SAQSEPSPAPP-AQPQIYPW 179

>HXA5_RAT (P52949) Homeobox protein Hox-A5 (Hox-1.3) (Fragment)|
          Length = 233

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 25/75 (33%), Positives = 33/75 (44%)
 Frame = -2

Query: 365 PACDSYEGGYNLGGIGAAVSAQVGKRS*LVSAA*SGQSETAAAACLSRGGKIQSTSAASE 186
           P  D++ GG N  G  +  SA  G    + S    G   TA+AA        +   A SE
Sbjct: 89  PGSDTHHGGKNSLGNSSGCSANCGSTH-ISSREGVG---TASAAEEDAPASSEQAGAQSE 144

Query: 185 INPAPPEIQPRFLSW 141
            +PAPP  QP+   W
Sbjct: 145 PSPAPP-AQPQIYPW 158

>PIM1_MOUSE (P06803) Proto-oncogene serine/threonine-protein kinase Pim-1 (EC|
           2.7.11.1)
          Length = 397

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -3

Query: 277 LAPLNPASLKXXXXRV*AGEERSSQPRRHPRS---IPRHLKFSRGS*AGVAAIESRGRRA 107
           + P  P +L        AGE    QPR+ P+S    P  L+ SR          S GRR 
Sbjct: 1   MGPAAPLALPPPALPDPAGEPARGQPRQRPQSSSDSPSALRASRSQSRNATRSLSPGRRL 60

Query: 106 SPS 98
           SPS
Sbjct: 61  SPS 63

>RCOR2_XENLA (Q6NRZ0) REST corepressor 2|
          Length = 503

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 137 NSSSRTAAEFQVARD*SRMPPRLTGSFLPCSDT---PPPPFQTGRI 265
           +SSS+ A     A     +PP L    +PC+ T    PPP Q GR+
Sbjct: 425 SSSSQPAPPAAAAAASLSLPPPLLRPAIPCAPTLHRQPPPLQPGRL 470

>GPT1_CANAL (O74248) Putative polyamine transporter|
          Length = 553

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 315 SSNAAKIVASFVT-ITCWTGWRPRDSDAEPARAGCCC 422
           S  A K  ASF+T  TCWT W  + + A      C C
Sbjct: 109 SQLAPKKYASFLTWFTCWTNWSCQITAAPSVSYSCAC 145

>CHST8_HUMAN (Q9H2A9) Carbohydrate sulfotransferase 8 (EC 2.8.2.-)|
           (N-acetylgalactosamine-4-O-sulfotransferase 1)
           (GalNAc-4-O-sulfotransferase 1) (GalNAc-4-ST1)
           (GalNAc4ST-1)
          Length = 424

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +2

Query: 167 QVARD*SRMPPRLTGSFLPCSDTPPPPFQTG-----RIKRR*LISSASPPA 304
           +V RD S   PR  G  LP  D P PP Q G     R +RR L+    P A
Sbjct: 74  RVTRDLSSGAPR--GRNLPAPDQPQPPLQRGTRLRLRQRRRRLLIKKMPAA 122

>PAG1_MOUSE (Q3U1F9) Phosphoprotein associated with glycosphingolipid-enriched|
           microdomains 1 (Csk-binding protein) (Transmembrane
           phosphoprotein Cbp)
          Length = 429

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 251 ETAAAACLSRGGKIQSTSAASEINPAPPEIQPRFLSWSCRDR 126
           E    A   +GGK +STSA  E+  AP E +  F  ++  DR
Sbjct: 188 EIKEVADKGQGGKSKSTSALKELQGAPMEGKADFAEYASVDR 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,371,755
Number of Sequences: 219361
Number of extensions: 951863
Number of successful extensions: 2823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2821
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)