ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 76 2e-11
2gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17... 76 2e-11
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 76 2e-11
4dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-11
5emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C1... 42 0.29
6emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 40 1.1
7gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
8gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
9gb|AC146718.2| Oryza sativa chromosome 3 B1130H05 genomic seque... 38 4.5
10ref|XM_324051.1| Neurospora crassa OR74A hypothetical protein (N... 38 4.5
11ref|XM_955065.1| Neurospora crassa OR74A hypothetical protein (N... 38 4.5
12gb|AC109232.17| Mus musculus chromosome 7, clone RP23-423P21, co... 38 4.5
13gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
14gb|AC144453.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
15gb|AC144452.2| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
16gb|AC079440.38| Mus musculus strain 129/Sv clone ct7-340l7 map 2... 38 4.5
17gb|BC004034.1| Mus musculus neugrin, neurite outgrowth associate... 38 4.5
18gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, co... 38 4.5
19emb|AL929472.21| Human DNA sequence from clone RP11-109P14 on ch... 38 4.5
20emb|AL132873.9|HSJ592G19 Human DNA sequence from clone RP4-592G1... 38 4.5
21gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genom... 38 4.5
22gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, compl... 38 4.5
23gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
24tpg|BK000940.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M332,... 38 4.5
25gb|AC104336.2| Homo sapiens chromosome 1 clone RP4-783C10, compl... 38 4.5
26dbj|AK146059.1| Mus musculus 15 days pregnant adult female place... 38 4.5
27dbj|AK144756.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 38 4.5
28emb|AL954374.4| Mouse DNA sequence from clone RP23-445A5 on chro... 38 4.5
29gb|AC157941.4| Mus musculus BAC clone RP24-253I2 from chromosome... 38 4.5
30dbj|AK083330.1| Mus musculus 2 days neonate thymus thymic cells ... 38 4.5
31emb|BX284616.13| Zebrafish DNA sequence from clone DKEY-192I20 i... 38 4.5
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
35dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
37dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
38dbj|AK195192.1| Mus musculus cDNA, clone:Y1G0117K21, strand:plus... 38 4.5
39dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
40dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
41dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
42emb|AL807810.19| Mouse DNA sequence from clone RP23-186F3 on chr... 38 4.5
43dbj|AK121639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.5
44emb|CR942625.2| Xenopus tropicalis finished cDNA, clone TNeu079d04 38 4.5
45gb|AC165888.18| Mus musculus chromosome 3, clone RP24-352B14, co... 38 4.5
46emb|BX293540.5| Zebrafish DNA sequence from clone DKEY-255N2 in ... 38 4.5
47gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
48gb|CP000201.1| Drosophila melanogaster genomic scaffold 21100002... 38 4.5
49gb|AC133170.2| Mus musculus BAC clone RP24-267K11 from 3, comple... 38 4.5
50ref|NM_031375.2| Mus musculus neugrin, neurite outgrowth associa... 38 4.5
51dbj|AB047544.1| Mus musculus mRNA for FI58GM, complete cds 38 4.5 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                          
Query: 58       gaggggagatgcgggaggaggtcaggagctcgtcgggggcgg 99
                |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 32295032 gaggggagatgcgggaggaggtgaggagctcgtcgggggcgg 32294991



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 56       gagaggggagatgcgggaggagg 78
                |||||||| ||||||||||||||
Sbjct: 26142108 gagaggggggatgcgggaggagg 26142086
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>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence
          Length = 102751

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                       
Query: 58    gaggggagatgcgggaggaggtcaggagctcgtcgggggcgg 99
             |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 28799 gaggggagatgcgggaggaggtgaggagctcgtcgggggcgg 28758
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                          
Query: 58       gaggggagatgcgggaggaggtcaggagctcgtcgggggcgg 99
                |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 32385542 gaggggagatgcgggaggaggtgaggagctcgtcgggggcgg 32385501



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 56       gagaggggagatgcgggaggagg 78
                |||||||| ||||||||||||||
Sbjct: 26233417 gagaggggggatgcgggaggagg 26233395
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>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full
           insert sequence
          Length = 3325

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                     
Query: 58  gaggggagatgcgggaggaggtcaggagctcgtcgggggcgg 99
           |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 75  gaggggagatgcgggaggaggtgaggagctcgtcgggggcgg 116
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>emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C18 on chromosome 22q13.3 Contains
             the KIAA0027 gene, ESTs, STSs, GSSs and seven putative CpG
             islands, complete sequence
          Length = 101270

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    accccaggagagggaggagcg 35
             |||||||||||||||||||||
Sbjct: 59034 accccaggagagggaggagcg 59054
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 19      caggagagggaggagcgaga 38
               ||||||||||||||||||||
Sbjct: 1922609 caggagagggaggagcgaga 1922628
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>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12,
              complete sequence
          Length = 145517

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     ccacagcgagcgagagagg 61
              |||||||||||||||||||
Sbjct: 116218 ccacagcgagcgagagagg 116200
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>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
            complete sequence
          Length = 143130

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 43   ccacagcgagcgagagagg 61
            |||||||||||||||||||
Sbjct: 4604 ccacagcgagcgagagagg 4586
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>gb|AC146718.2| Oryza sativa chromosome 3  B1130H05 genomic sequence, complete sequence
          Length = 49565

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 56    gagaggggagatgcgggaggagg 78
             |||||||| ||||||||||||||
Sbjct: 43718 gagaggggggatgcgggaggagg 43740
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>ref|XM_324051.1| Neurospora crassa OR74A hypothetical protein (NCU04695.1) partial
           mRNA
          Length = 858

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 61  gggagatgcgggaggaggt 79
           |||||||||||||||||||
Sbjct: 110 gggagatgcgggaggaggt 92
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>ref|XM_955065.1| Neurospora crassa OR74A hypothetical protein (NCU04695.1) partial
           mRNA
          Length = 858

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 61  gggagatgcgggaggaggt 79
           |||||||||||||||||||
Sbjct: 110 gggagatgcgggaggaggt 92
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>gb|AC109232.17| Mus musculus chromosome 7, clone RP23-423P21, complete sequence
          Length = 201262

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     ccacagcgagcgagagagg 61
              |||||||||||||||||||
Sbjct: 163545 ccacagcgagcgagagagg 163527
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>gb|AC144737.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0018K15,
              complete sequence
          Length = 168519

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 77     ggtcaggagctcgtcgggg 95
              |||||||||||||||||||
Sbjct: 140302 ggtcaggagctcgtcgggg 140284
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>gb|AC144453.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0050A24, complete sequence
          Length = 142574

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     gagggaggagcgagaggcg 42
              |||||||||||||||||||
Sbjct: 107202 gagggaggagcgagaggcg 107220
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>gb|AC144452.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OSJNBa0025G07, complete sequence
          Length = 167136

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    gagggaggagcgagaggcg 42
             |||||||||||||||||||
Sbjct: 30624 gagggaggagcgagaggcg 30642
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>gb|AC079440.38| Mus musculus strain 129/Sv clone ct7-340l7 map 2, complete sequence
          Length = 131387

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     tccaccccaggagagggag 30
              |||||||||||||||||||
Sbjct: 106846 tccaccccaggagagggag 106828
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>gb|BC004034.1| Mus musculus neugrin, neurite outgrowth associated, mRNA (cDNA
          clone MGC:7646 IMAGE:3495639), complete cds
          Length = 1355

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 43 ccacagcgagcgagagagg 61
          |||||||||||||||||||
Sbjct: 94 ccacagcgagcgagagagg 76
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>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence
          Length = 219863

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    ccacagcgagcgagagagg 61
             |||||||||||||||||||
Sbjct: 36352 ccacagcgagcgagagagg 36334
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>emb|AL929472.21| Human DNA sequence from clone RP11-109P14 on chromosome 1 Contains a
             pseudogene similar to part of actinin alpha4 (ACTN4), a
             novel pseudogene, two genes for novel proteins (FLJ31434,
             FLJ45459), the gene for ischemia/reperfusion inducible
             protein (FLJ23476), the MTF1 gene for metal-regulatory
             transcription factor 1, a ribosomal protein S2 (RPS2)
             pseudogene, the 3' end of the INPP5B gene for 75kDa
             nositol polyphosphate-5-phosphatase, two novel genes and
             four CpG islands, complete sequence
          Length = 143060

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 19    caggagagggaggagcgagaggc 41
             ||||||||||||||| |||||||
Sbjct: 17037 caggagagggaggagtgagaggc 17015
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>emb|AL132873.9|HSJ592G19 Human DNA sequence from clone RP4-592G19 on chromosome 20 Contains
            STSs and GSSs, complete sequence
          Length = 13413

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 56   gagaggggagatgcgggaggaggtcag 82
            |||||||||||||| ||| ||||||||
Sbjct: 1820 gagaggggagatgctggatgaggtcag 1794
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>gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genomic sequence, complete
             sequence
          Length = 139187

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 56    gagaggggagatgcgggaggagg 78
             |||||||| ||||||||||||||
Sbjct: 14442 gagaggggggatgcgggaggagg 14464
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>gb|AC156615.7| Mus musculus chromosome 3, clone RP23-1B20, complete sequence
          Length = 210003

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 2    atttccccattccacccca 20
            |||||||||||||||||||
Sbjct: 5577 atttccccattccacccca 5559
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>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0047M04, complete sequence
          Length = 109523

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    gagggaggagcgagaggcg 42
             |||||||||||||||||||
Sbjct: 97380 gagggaggagcgagaggcg 97362
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>tpg|BK000940.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M332, complete sequence
          Length = 14546

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 24   gagggaggagcgagaggcg 42
            |||||||||||||||||||
Sbjct: 9214 gagggaggagcgagaggcg 9232
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>gb|AC104336.2| Homo sapiens chromosome 1 clone RP4-783C10, complete sequence
          Length = 134161

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 19     caggagagggaggagcgagaggc 41
              ||||||||||||||| |||||||
Sbjct: 108949 caggagagggaggagtgagaggc 108927
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>dbj|AK146059.1| Mus musculus 15 days pregnant adult female placenta cDNA, RIKEN
          full-length enriched library, clone:I530027N18
          product:Neugrin, full insert sequence
          Length = 1693

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 43 ccacagcgagcgagagagg 61
          |||||||||||||||||||
Sbjct: 85 ccacagcgagcgagagagg 67
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>dbj|AK144756.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730029N10 product:Neugrin, full insert
           sequence
          Length = 1313

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 43  ccacagcgagcgagagagg 61
           |||||||||||||||||||
Sbjct: 103 ccacagcgagcgagagagg 85
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>emb|AL954374.4| Mouse DNA sequence from clone RP23-445A5 on chromosome 2, complete
            sequence
          Length = 87941

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 12   tccaccccaggagagggag 30
            |||||||||||||||||||
Sbjct: 3631 tccaccccaggagagggag 3613
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>gb|AC157941.4| Mus musculus BAC clone RP24-253I2 from chromosome 3, complete sequence
          Length = 204323

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 19     caggagagggaggagcgagaggc 41
              ||||| |||||||||||||||||
Sbjct: 150484 caggaaagggaggagcgagaggc 150506
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>dbj|AK083330.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:C920007H02
           product:neugrin, full insert sequence
          Length = 1711

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 43  ccacagcgagcgagagagg 61
           |||||||||||||||||||
Sbjct: 103 ccacagcgagcgagagagg 85
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>emb|BX284616.13| Zebrafish DNA sequence from clone DKEY-192I20 in linkage group 19,
             complete sequence
          Length = 223573

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    gagagggaggagcgagagg 40
             |||||||||||||||||||
Sbjct: 43510 gagagggaggagcgagagg 43528
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 24       gagggaggagcgagaggcg 42
                |||||||||||||||||||
Sbjct: 27146327 gagggaggagcgagaggcg 27146309
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 56      gagaggggagatgcgggag 74
               |||||||||||||||||||
Sbjct: 7374525 gagaggggagatgcgggag 7374543
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 52      gcgagagaggggagatgcgggag 74
               |||||||||||||| ||||||||
Sbjct: 8672590 gcgagagaggggaggtgcgggag 8672612
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 77       ggtcaggagctcgtcgggg 95
                |||||||||||||||||||
Sbjct: 23454766 ggtcaggagctcgtcgggg 23454748



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 43       ccacagcgagcgagagagg 61
                |||||||||||||||||||
Sbjct: 16792108 ccacagcgagcgagagagg 16792090



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 24       gagggaggagcgagaggcg 42
                |||||||||||||||||||
Sbjct: 12153512 gagggaggagcgagaggcg 12153530
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 24       gagggaggagcgagaggcg 42
                |||||||||||||||||||
Sbjct: 20209465 gagggaggagcgagaggcg 20209483
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>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0051H17
          Length = 187471

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 24     gagggaggagcgagaggcg 42
              |||||||||||||||||||
Sbjct: 115843 gagggaggagcgagaggcg 115861
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>dbj|AK195192.1| Mus musculus cDNA, clone:Y1G0117K21, strand:plus,
          reference:ENSEMBL:Mouse-Transcript-
          ENST:ENSMUST00000061677, based on BLAT search
          Length = 104

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 43 ccacagcgagcgagagagg 61
          |||||||||||||||||||
Sbjct: 23 ccacagcgagcgagagagg 5
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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0037N01
          Length = 174085

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 52    gcgagagaggggagatgcgggag 74
             |||||||||||||| ||||||||
Sbjct: 87572 gcgagagaggggaggtgcgggag 87594
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>dbj|AP004630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0031A09
          Length = 162511

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 52     gcgagagaggggagatgcgggag 74
              |||||||||||||| ||||||||
Sbjct: 147409 gcgagagaggggaggtgcgggag 147431
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>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0086N05
          Length = 163670

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 56     gagaggggagatgcgggag 74
              |||||||||||||||||||
Sbjct: 101206 gagaggggagatgcgggag 101224
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>emb|AL807810.19| Mouse DNA sequence from clone RP23-186F3 on chromosome 4, complete
            sequence
          Length = 165488

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                       
Query: 18   ccaggagagggaggagcgagaggcgcc 44
            ||||||||||||||||  |||||||||
Sbjct: 2921 ccaggagagggaggagtcagaggcgcc 2947
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>dbj|AK121639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054G22,
          full insert sequence
          Length = 3064

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 56 gagaggggagatgcgggaggagg 78
          |||||||| ||||||||||||||
Sbjct: 35 gagaggggggatgcgggaggagg 13
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>emb|CR942625.2| Xenopus tropicalis finished cDNA, clone TNeu079d04
          Length = 2282

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 46  cagcgagcgagagaggggagatg 68
           ||||||||||||| |||||||||
Sbjct: 293 cagcgagcgagagcggggagatg 315
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>gb|AC165888.18| Mus musculus chromosome 3, clone RP24-352B14, complete sequence
          Length = 181505

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 2   atttccccattccacccca 20
           |||||||||||||||||||
Sbjct: 671 atttccccattccacccca 689
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>emb|BX293540.5| Zebrafish DNA sequence from clone DKEY-255N2 in linkage group 8, complete
              sequence
          Length = 181168

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     gagagggaggagcgagagg 40
              |||||||||||||||||||
Sbjct: 177095 gagagggaggagcgagagg 177077
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 24       gagggaggagcgagaggcg 42
                |||||||||||||||||||
Sbjct: 27473380 gagggaggagcgagaggcg 27473362
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>gb|CP000201.1| Drosophila melanogaster genomic scaffold 211000022280746
          Length = 237751

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    agcgagcgagagaggggag 65
             |||||||||||||||||||
Sbjct: 66371 agcgagcgagagaggggag 66353
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>gb|AC133170.2| Mus musculus BAC clone RP24-267K11 from 3, complete sequence
          Length = 158692

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 19    caggagagggaggagcgagaggc 41
             ||||| |||||||||||||||||
Sbjct: 86719 caggaaagggaggagcgagaggc 86697
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>ref|NM_031375.2| Mus musculus neugrin, neurite outgrowth associated (Ngrn), mRNA
          Length = 1711

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 43  ccacagcgagcgagagagg 61
           |||||||||||||||||||
Sbjct: 103 ccacagcgagcgagagagg 85
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>dbj|AB047544.1| Mus musculus mRNA for FI58GM, complete cds
          Length = 1366

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 43 ccacagcgagcgagagagg 61
          |||||||||||||||||||
Sbjct: 74 ccacagcgagcgagagagg 56


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,485,905
Number of Sequences: 3902068
Number of extensions: 1485905
Number of successful extensions: 99667
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98877
Number of HSP's gapped (non-prelim): 790
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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