ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27h04 |
|---|---|
| Clone Library Name | barley_pub |
>NEO1_CHICK (Q90610) Neogenin (Fragment)| Length = 1443 Score = 30.8 bits (68), Expect = 0.82 Identities = 17/66 (25%), Positives = 26/66 (39%) Frame = -2 Query: 213 HGHGSSSCETEVXXXXXXXSLGPTKRMNTWR*RTGSPPRACLEWPAQLGGTPQPQERERQ 34 HGHG SS +V GP + + GSP + W L G + Q + Sbjct: 505 HGHGESSAPLKVATQPEVQLPGPAPNIRAY---AGSPTSVTVTWETPLSGNGEIQNYKLY 561 Query: 33 VVKGGE 16 ++ G+ Sbjct: 562 YMEKGQ 567
>Y4IP_RHISN (P55499) Hypothetical 14.4 kDa protein y4iP| Length = 131 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%) Frame = -1 Query: 136 HEYMEIEDWITS-----ACLSRVASSAGRNPTTTRE 44 H +E EDWITS A + A +AGR PT E Sbjct: 90 HRALEAEDWITSHVVDAASMRCRAGTAGRRPTALTE 125
>RL10_PYRHO (O58367) 50S ribosomal protein L10e| Length = 181 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Frame = -1 Query: 259 STSEQSQRYGHGRRRPWPWEQQLRDRGXXXXXXXXSRTNQAHEYMEIEDWITSA------ 98 +T ++ RYG+G RRP+ L R R N+ H IE +A Sbjct: 100 ATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFPCK 159 Query: 97 CLSRVASSAGRNPTT 53 C R+ G + TT Sbjct: 160 CYYRIYDKEGNDVTT 174
>RL10_PYRFU (Q9UWP5) 50S ribosomal protein L10e| Length = 181 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Frame = -1 Query: 259 STSEQSQRYGHGRRRPWPWEQQLRDRGXXXXXXXXSRTNQAHEYMEIEDWITSA------ 98 +T ++ RYG+G RRP+ L R R N+ H IE +A Sbjct: 100 ATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFPCK 159 Query: 97 CLSRVASSAGRNPTT 53 C R+ G + TT Sbjct: 160 CYYRIYDKEGNDVTT 174
>RL10_PYRAB (Q9UYU9) 50S ribosomal protein L10e| Length = 181 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%) Frame = -1 Query: 259 STSEQSQRYGHGRRRPWPWEQQLRDRGXXXXXXXXSRTNQAHEYMEIEDWITSA------ 98 +T ++ RYG+G RRP+ L R R N+ H IE +A Sbjct: 100 ATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFPVK 159 Query: 97 CLSRVASSAGRNPTT 53 C R+ G + TT Sbjct: 160 CYYRIYDKEGNDVTT 174
>YM92_CAEEL (P34531) Hypothetical protein M01A8.2 in chromosome III| Length = 937 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -2 Query: 336 VLSHRSGKWNSSISISISMDRYRLVNPPQSRVRDTGMEGVG 214 ++S RSG + ++ISI D + SR+ +T G+G Sbjct: 894 IISSRSGSISQRLAISIENDGEPTIKSESSRIGNTSDSGIG 934
>VPM_HAEIN (P44234) Mu-like prophage FluMu tail tube protein| Length = 118 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -2 Query: 87 EWPAQLGGTPQPQERERQVVKG 22 EWP+ GT P +ER+ VKG Sbjct: 17 EWPSDNDGTLTPGGKERETVKG 38
>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC| 3.4.23.-)] Length = 811 Score = 27.3 bits (59), Expect = 9.1 Identities = 23/80 (28%), Positives = 26/80 (32%) Frame = -1 Query: 247 QSQRYGHGRRRPWPWEQQLRDRGXXXXXXXXSRTNQAHEYMEIEDWITSACLSRVASSAG 68 Q QRYG GR R W ++ R NQA S Sbjct: 545 QPQRYGGGRGRRWNDNTNNQESRPSDQGSQTPRPNQA------------------GSGVR 586 Query: 67 RNPTTTREGEAGRQGRGKGN 8 N + T AGR GRG N Sbjct: 587 GNQSQTPRPAAGRGGRGNHN 606
>GLMS_CORDI (Q6NG33) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 624 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +3 Query: 99 AEVIQSSISMYSCAWLVRETEMEMEMEPLSRSCCSHGH 212 A V ++S A V+ E E+E P+ +SC GH Sbjct: 41 AVVADGAVSFRKKAGKVQALEQELETSPMPQSCLGIGH 78
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 23.5 bits (49), Expect(2) = 9.8 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -1 Query: 103 SACLSRVASSAGRNPTTTREGEAGRQGRGKG 11 S+ L S++G+ ++TR+G Q G G Sbjct: 2451 SSGLGHYGSTSGQTASSTRQGSGQGQASGSG 2481 Score = 23.5 bits (49), Expect(2) = 9.8 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -1 Query: 103 SACLSRVASSAGRNPTTTREGEAGRQGRGKG 11 S+ L S++G+ ++TR+G Q G G Sbjct: 2109 SSGLGHYGSTSGQTASSTRQGSGQGQASGSG 2139 Score = 23.5 bits (49), Expect(2) = 9.8 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -1 Query: 103 SACLSRVASSAGRNPTTTREGEAGRQGRGKG 11 S+ L S++G+ ++TR+G Q G G Sbjct: 1761 SSGLGHYGSTSGQTASSTRQGSGQGQASGSG 1791 Score = 23.5 bits (49), Expect(2) = 9.8 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -1 Query: 103 SACLSRVASSAGRNPTTTREGEAGRQGRGKG 11 S+ L S++G+ ++TR+G Q G G Sbjct: 1413 SSGLGHYGSTSGQTASSTRQGSGQGQASGSG 1443 Score = 23.5 bits (49), Expect(2) = 9.8 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -1 Query: 103 SACLSRVASSAGRNPTTTREGEAGRQGRGKG 11 S+ L S++G+ ++TR+G Q G G Sbjct: 1065 SSGLGHYGSTSGQTASSTRQGSGQGQASGSG 1095 Score = 23.5 bits (49), Expect(2) = 9.8 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -1 Query: 103 SACLSRVASSAGRNPTTTREGEAGRQGRGKG 11 S+ L S++G+ ++TR+G Q G G Sbjct: 716 SSGLGHYGSTSGQTASSTRQGSGQGQASGSG 746 Score = 21.9 bits (45), Expect(2) = 9.8 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 Query: 234 TGMEGVGHGHGSSS 193 +G +G HGH SSS Sbjct: 2414 SGQQGSHHGHSSSS 2427 Score = 21.9 bits (45), Expect(2) = 9.8 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 Query: 234 TGMEGVGHGHGSSS 193 +G +G HGH SSS Sbjct: 2072 SGQQGSHHGHSSSS 2085 Score = 21.9 bits (45), Expect(2) = 9.8 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 Query: 234 TGMEGVGHGHGSSS 193 +G +G HGH SSS Sbjct: 1724 SGQQGSHHGHSSSS 1737 Score = 21.9 bits (45), Expect(2) = 9.8 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 Query: 234 TGMEGVGHGHGSSS 193 +G +G HGH SSS Sbjct: 1376 SGQQGSHHGHSSSS 1389 Score = 21.9 bits (45), Expect(2) = 9.8 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 Query: 234 TGMEGVGHGHGSSS 193 +G +G HGH SSS Sbjct: 1028 SGQQGSHHGHSSSS 1041 Score = 21.9 bits (45), Expect(2) = 9.8 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 Query: 234 TGMEGVGHGHGSSS 193 +G +G HGH SSS Sbjct: 679 SGQQGSHHGHSSSS 692 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,250,724 Number of Sequences: 219361 Number of extensions: 818816 Number of successful extensions: 2804 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2720 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2801 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
