ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 56 7e-06
2emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in... 38 1.7
3emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in... 38 1.7
4ref|XM_751753.1| Ustilago maydis 521 hypothetical protein (UM006... 36 6.6
5gb|AC118240.8| Mus musculus chromosome 16, clone RP23-186J5, com... 36 6.6
6gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosom... 36 6.6
7gb|AC067930.7| Homo sapiens chromosome 8, clone RP11-661A12, com... 36 6.6
8gb|AY128419.1| Drosophila melanogaster GH14073 full insert cDNA 36 6.6
9gb|AC091211.3| Drosophila melanogaster 3L BAC RP98-26E12 (Roswel... 36 6.6
10gb|AC091228.3| Drosophila melanogaster 3L BAC RP98-10L9 (Roswell... 36 6.6
11gb|AC098482.2| Homo sapiens chromosome 3 clone RP11-839L21, comp... 36 6.6
12ref|NM_168178.1| Drosophila melanogaster SP1173 CG10121-RD, tran... 36 6.6
13ref|NM_168177.2| Drosophila melanogaster SP1173 CG10121-RC, tran... 36 6.6
14ref|NM_168176.1| Drosophila melanogaster SP1173 CG10121-RA, tran... 36 6.6
15ref|NM_139796.2| Drosophila melanogaster SP1173 CG10121-RB, tran... 36 6.6
16emb|AL929518.16| Zebrafish DNA sequence from clone CH211-163F10 ... 36 6.6
17gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, co... 36 6.6
18gb|AF239609.1|AF239609 Drosophila melanogaster SP1173 mRNA, comp... 36 6.6
19gb|AE003561.3| Drosophila melanogaster chromosome 3L, section 24... 36 6.6
20gb|AC004352.1|AC004352 Drosophila melanogaster DNA sequence (P1 ... 36 6.6
21gb|AC004251.1|AC004251 Drosophila melanogaster (P1 DS08305 (D253... 36 6.6
22gb|M24359.1|RATPKM12 Rat pyruvate kinase M1 and M2 subunit genes... 36 6.6

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score = 56.0 bits (28), Expect = 7e-06
 Identities = 45/48 (93%), Gaps = 2/48 (4%)
 Strand = Plus / Plus

                                                          
Query: 1  acacagcagcaccacagcgagctaacttagcaagcgtgccacactccc 48
          |||||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct: 4  acacagca-caccgcagcgagctaacttag-aagcgtgccacactccc 49



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>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21,
             complete sequence
          Length = 168569

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     acacagcagcaccacagcg 19
             |||||||||||||||||||
Sbjct: 55970 acacagcagcaccacagcg 55952



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>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21,
             complete sequence
          Length = 179432

 Score = 38.2 bits (19), Expect = 1.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     acacagcagcaccacagcg 19
             |||||||||||||||||||
Sbjct: 95885 acacagcagcaccacagcg 95867



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>ref|XM_751753.1| Ustilago maydis 521 hypothetical protein (UM00699.1) partial mRNA
          Length = 1815

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 7   cagcaccacagcgagcta 24
           ||||||||||||||||||
Sbjct: 332 cagcaccacagcgagcta 349



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>gb|AC118240.8| Mus musculus chromosome 16, clone RP23-186J5, complete sequence
          Length = 222869

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      acacagcagcaccacagc 18
              ||||||||||||||||||
Sbjct: 162188 acacagcagcaccacagc 162205



 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      acacagcagcaccacagc 18
              ||||||||||||||||||
Sbjct: 162136 acacagcagcaccacagc 162153



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>gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosome 16, complete
             sequence
          Length = 204940

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     acacagcagcaccacagc 18
             ||||||||||||||||||
Sbjct: 60800 acacagcagcaccacagc 60817



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>gb|AC067930.7| Homo sapiens chromosome 8, clone RP11-661A12, complete sequence
          Length = 174906

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     acacagcagcaccacagc 18
             ||||||||||||||||||
Sbjct: 10608 acacagcagcaccacagc 10625



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>gb|AY128419.1| Drosophila melanogaster GH14073 full insert cDNA
          Length = 2826

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1    acacagcagcaccacagc 18
            ||||||||||||||||||
Sbjct: 1696 acacagcagcaccacagc 1679



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>gb|AC091211.3| Drosophila melanogaster 3L BAC RP98-26E12 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194589

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      acacagcagcaccacagc 18
              ||||||||||||||||||
Sbjct: 113634 acacagcagcaccacagc 113651



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>gb|AC091228.3| Drosophila melanogaster 3L BAC RP98-10L9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 156142

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      acacagcagcaccacagc 18
              ||||||||||||||||||
Sbjct: 130751 acacagcagcaccacagc 130734



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>gb|AC098482.2| Homo sapiens chromosome 3 clone RP11-839L21, complete sequence
          Length = 211533

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     acacagcagcaccacagc 18
             ||||||||||||||||||
Sbjct: 28115 acacagcagcaccacagc 28132



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>ref|NM_168178.1| Drosophila melanogaster SP1173 CG10121-RD, transcript variant D
            (SP1173), mRNA
          Length = 3661

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1    acacagcagcaccacagc 18
            ||||||||||||||||||
Sbjct: 2174 acacagcagcaccacagc 2157



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>ref|NM_168177.2| Drosophila melanogaster SP1173 CG10121-RC, transcript variant C
            (SP1173), mRNA
          Length = 3571

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1    acacagcagcaccacagc 18
            ||||||||||||||||||
Sbjct: 2084 acacagcagcaccacagc 2067



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>ref|NM_168176.1| Drosophila melanogaster SP1173 CG10121-RA, transcript variant A
            (SP1173), mRNA
          Length = 3183

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1    acacagcagcaccacagc 18
            ||||||||||||||||||
Sbjct: 1696 acacagcagcaccacagc 1679



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>ref|NM_139796.2| Drosophila melanogaster SP1173 CG10121-RB, transcript variant B
            (SP1173), mRNA
          Length = 3064

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1    acacagcagcaccacagc 18
            ||||||||||||||||||
Sbjct: 1577 acacagcagcaccacagc 1560



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>emb|AL929518.16| Zebrafish DNA sequence from clone CH211-163F10 in linkage group 2,
              complete sequence
          Length = 162473

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 3      acagcagcaccacagcga 20
              ||||||||||||||||||
Sbjct: 108299 acagcagcaccacagcga 108316



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>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence
          Length = 179941

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      acacagcagcaccacagc 18
              ||||||||||||||||||
Sbjct: 142424 acacagcagcaccacagc 142441



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>gb|AF239609.1|AF239609 Drosophila melanogaster SP1173 mRNA, complete cds
          Length = 3165

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1    acacagcagcaccacagc 18
            ||||||||||||||||||
Sbjct: 1691 acacagcagcaccacagc 1674



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>gb|AE003561.3| Drosophila melanogaster chromosome 3L, section 24 of 83 of the complete
             sequence
          Length = 274289

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     acacagcagcaccacagc 18
             ||||||||||||||||||
Sbjct: 41222 acacagcagcaccacagc 41239



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>gb|AC004352.1|AC004352 Drosophila melanogaster DNA sequence (P1 DS02898 (D255)), complete
             sequence
          Length = 78643

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     acacagcagcaccacagc 18
             ||||||||||||||||||
Sbjct: 40234 acacagcagcaccacagc 40251



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>gb|AC004251.1|AC004251 Drosophila melanogaster (P1 DS08305 (D253)) DNA sequence, complete
           sequence
          Length = 83846

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 1   acacagcagcaccacagc 18
           ||||||||||||||||||
Sbjct: 192 acacagcagcaccacagc 175



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>gb|M24359.1|RATPKM12 Rat pyruvate kinase M1 and M2 subunit genes, complete cds
          Length = 11788

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 23   taacttagcaagcgtgcc 40
            ||||||||||||||||||
Sbjct: 8662 taacttagcaagcgtgcc 8679


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 283,021
Number of Sequences: 3902068
Number of extensions: 283021
Number of successful extensions: 74027
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73978
Number of HSP's gapped (non-prelim): 49
length of query: 50
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 30
effective length of database: 17,155,003,908
effective search space: 514650117240
effective search space used: 514650117240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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