Clone Name | bastl27g12 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 56.0 bits (28), Expect = 7e-06 Identities = 45/48 (93%), Gaps = 2/48 (4%) Strand = Plus / Plus Query: 1 acacagcagcaccacagcgagctaacttagcaagcgtgccacactccc 48 |||||||| |||| |||||||||||||||| ||||||||||||||||| Sbjct: 4 acacagca-caccgcagcgagctaacttag-aagcgtgccacactccc 49
>emb|CR354383.8| Zebrafish DNA sequence from clone CH211-123O7 in linkage group 21, complete sequence Length = 168569 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagcg 19 ||||||||||||||||||| Sbjct: 55970 acacagcagcaccacagcg 55952
>emb|CR354613.7| Zebrafish DNA sequence from clone CH211-112G7 in linkage group 21, complete sequence Length = 179432 Score = 38.2 bits (19), Expect = 1.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagcg 19 ||||||||||||||||||| Sbjct: 95885 acacagcagcaccacagcg 95867
>ref|XM_751753.1| Ustilago maydis 521 hypothetical protein (UM00699.1) partial mRNA Length = 1815 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 cagcaccacagcgagcta 24 |||||||||||||||||| Sbjct: 332 cagcaccacagcgagcta 349
>gb|AC118240.8| Mus musculus chromosome 16, clone RP23-186J5, complete sequence Length = 222869 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 162188 acacagcagcaccacagc 162205 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 162136 acacagcagcaccacagc 162153
>gb|AC152503.5| Mus musculus BAC clone RP23-190G10 from chromosome 16, complete sequence Length = 204940 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 60800 acacagcagcaccacagc 60817
>gb|AC067930.7| Homo sapiens chromosome 8, clone RP11-661A12, complete sequence Length = 174906 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 10608 acacagcagcaccacagc 10625
>gb|AY128419.1| Drosophila melanogaster GH14073 full insert cDNA Length = 2826 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 1696 acacagcagcaccacagc 1679
>gb|AC091211.3| Drosophila melanogaster 3L BAC RP98-26E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194589 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 113634 acacagcagcaccacagc 113651
>gb|AC091228.3| Drosophila melanogaster 3L BAC RP98-10L9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 156142 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 130751 acacagcagcaccacagc 130734
>gb|AC098482.2| Homo sapiens chromosome 3 clone RP11-839L21, complete sequence Length = 211533 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 28115 acacagcagcaccacagc 28132
>ref|NM_168178.1| Drosophila melanogaster SP1173 CG10121-RD, transcript variant D (SP1173), mRNA Length = 3661 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 2174 acacagcagcaccacagc 2157
>ref|NM_168177.2| Drosophila melanogaster SP1173 CG10121-RC, transcript variant C (SP1173), mRNA Length = 3571 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 2084 acacagcagcaccacagc 2067
>ref|NM_168176.1| Drosophila melanogaster SP1173 CG10121-RA, transcript variant A (SP1173), mRNA Length = 3183 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 1696 acacagcagcaccacagc 1679
>ref|NM_139796.2| Drosophila melanogaster SP1173 CG10121-RB, transcript variant B (SP1173), mRNA Length = 3064 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 1577 acacagcagcaccacagc 1560
>emb|AL929518.16| Zebrafish DNA sequence from clone CH211-163F10 in linkage group 2, complete sequence Length = 162473 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 3 acagcagcaccacagcga 20 |||||||||||||||||| Sbjct: 108299 acagcagcaccacagcga 108316
>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence Length = 179941 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 142424 acacagcagcaccacagc 142441
>gb|AF239609.1|AF239609 Drosophila melanogaster SP1173 mRNA, complete cds Length = 3165 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 1691 acacagcagcaccacagc 1674
>gb|AE003561.3| Drosophila melanogaster chromosome 3L, section 24 of 83 of the complete sequence Length = 274289 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 41222 acacagcagcaccacagc 41239
>gb|AC004352.1|AC004352 Drosophila melanogaster DNA sequence (P1 DS02898 (D255)), complete sequence Length = 78643 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 40234 acacagcagcaccacagc 40251
>gb|AC004251.1|AC004251 Drosophila melanogaster (P1 DS08305 (D253)) DNA sequence, complete sequence Length = 83846 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 acacagcagcaccacagc 18 |||||||||||||||||| Sbjct: 192 acacagcagcaccacagc 175
>gb|M24359.1|RATPKM12 Rat pyruvate kinase M1 and M2 subunit genes, complete cds Length = 11788 Score = 36.2 bits (18), Expect = 6.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 23 taacttagcaagcgtgcc 40 |||||||||||||||||| Sbjct: 8662 taacttagcaagcgtgcc 8679 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 283,021 Number of Sequences: 3902068 Number of extensions: 283021 Number of successful extensions: 74027 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 73978 Number of HSP's gapped (non-prelim): 49 length of query: 50 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 30 effective length of database: 17,155,003,908 effective search space: 514650117240 effective search space used: 514650117240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)