>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +1

Query: 256 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLK 414
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLK 107

>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 68.9 bits (167), Expect = 5e-12
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +1

Query: 256 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLK 414
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLK 107

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 58.5 bits (140), Expect = 7e-09
 Identities = 29/51 (56%), Positives = 37/51 (72%)
 Frame = +1

Query: 259 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 411
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTL 107

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +1

Query: 283 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 411
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETM 90

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 25/51 (49%), Positives = 37/51 (72%)
 Frame = +1

Query: 259 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 411
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDL 98

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +1

Query: 259 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTL 411
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDL 99

>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 295 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 393
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,705,050
Number of Sequences: 219361
Number of extensions: 451765
Number of successful extensions: 2420
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2411
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)