>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)|
          Length = 809

 Score =  187 bits (476), Expect = 8e-48
 Identities = 87/108 (80%), Positives = 100/108 (92%)
 Frame = +1

Query: 124 PSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 303
           P+ S+D K+KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L+
Sbjct: 4   PAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILI 63

Query: 304 KGKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           KGKKRKDT+CI  AD+TC+EPK+RMNK VR NLRVRLGDV+SVHQCPD
Sbjct: 64  KGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPD 111

>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)|
           (Transitional endoplasmic reticulum ATPase E)
          Length = 810

 Score =  186 bits (471), Expect = 3e-47
 Identities = 89/109 (81%), Positives = 99/109 (90%)
 Frame = +1

Query: 121 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 300
           EP SS D K KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L
Sbjct: 4   EPESS-DSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTIL 62

Query: 301 LKGKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           +KGKKRKDT+CI  AD+TC+EPK+RMNK VR NLRVRLGDV+SVHQCPD
Sbjct: 63  IKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPD 111

>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing|
           protein homolog) (VCP)
          Length = 807

 Score =  184 bits (468), Expect = 7e-47
 Identities = 91/113 (80%), Positives = 101/113 (89%), Gaps = 1/113 (0%)
 Frame = +1

Query: 112 QQGEPSSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRG 288
           QQGE   S+DPK+ KKD+STAILERKKSPNRLVVDEA NDDNSVV +HP TME+LQLFRG
Sbjct: 3   QQGE---SSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRG 59

Query: 289 DTVLLKGKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           DT+L+KGKKRKDTICI  AD+ C+EPK+RMNK VR NLRVRLGDVVSVHQCPD
Sbjct: 60  DTILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPD 112

>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D|
           (AtCDC48d) (Transitional endoplasmic reticulum ATPase D)
          Length = 815

 Score =  179 bits (454), Expect = 3e-45
 Identities = 85/108 (78%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
 Frame = +1

Query: 127 SSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 303
           + S+D K  KKD+STAILE+KK+ NRLVVDEA NDDNSVV+LHPDTME+LQLFRGDT+L+
Sbjct: 5   AESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILI 64

Query: 304 KGKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           KGKKRKDT+CI  AD+TCDEPK+RMNK VR NLRVRLGDV+SVHQCPD
Sbjct: 65  KGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPD 112

>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog|
          Length = 805

 Score =  177 bits (450), Expect = 8e-45
 Identities = 86/109 (78%), Positives = 95/109 (87%)
 Frame = +1

Query: 121 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 300
           +  SS    AKKD+STAILERKK+ NRLVVDEA NDDNSVVALHP TME+LQLFRGDT+L
Sbjct: 4   QAESSDSKNAKKDFSTAILERKKAANRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTIL 63

Query: 301 LKGKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           +KGKKRKDT+ I  AD+TCDEPK+RMNK VR NLRVRLGDVVSVHQCPD
Sbjct: 64  IKGKKRKDTVVIALADETCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPD 112

>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  142 bits (359), Expect = 3e-34
 Identities = 69/107 (64%), Positives = 85/107 (79%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 307 GKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           GKKR++ +CIV +DDTC + K+RMN+ VR NLRVRLGDV+S+  CPD
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPD 106

>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  142 bits (359), Expect = 3e-34
 Identities = 69/107 (64%), Positives = 85/107 (79%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 307 GKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           GKKR++ +CIV +DDTC + K+RMN+ VR NLRVRLGDV+S+  CPD
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPD 106

>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  142 bits (359), Expect = 3e-34
 Identities = 69/107 (64%), Positives = 85/107 (79%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 307 GKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           GKKR++ +CIV +DDTC + K+RMN+ VR NLRVRLGDV+S+  CPD
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPD 106

>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing
           protein) (VCP)
          Length = 805

 Score =  140 bits (354), Expect = 1e-33
 Identities = 68/107 (63%), Positives = 84/107 (78%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S AD K   D STAIL++K  PNRL+VDEA N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 1   ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59

Query: 307 GKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           GKKR++ +CIV +DDTC + K+RMN+ VR NLRV LGDV+S+  CPD
Sbjct: 60  GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPD 106

>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)|
           (15S Mg(2+)-ATPase p97 subunit)
          Length = 805

 Score =  140 bits (353), Expect = 1e-33
 Identities = 67/107 (62%), Positives = 86/107 (80%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S +D K+  D STAIL++K  PNRL+VDE+ N+DNSVV+L    M+ LQLFRGDTVLLK
Sbjct: 2   ASGSDTKSD-DLSTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK 60

Query: 307 GKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           GKKR++ +CIV +DDTC + K+RMN+ VR NLRVRLGDV+S+  CPD
Sbjct: 61  GKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPD 107

>CDC48_YEAST (P25694) Cell division control protein 48|
          Length = 835

 Score =  133 bits (334), Expect = 2e-31
 Identities = 61/107 (57%), Positives = 84/107 (78%)
 Frame = +1

Query: 127 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 306
           +S  DP+ +   +TAIL RKK  N L+VD+A NDDNSV+A++ +TM++L+LFRGDTVL+K
Sbjct: 11  ASGVDPREEDKTATAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTVLVK 70

Query: 307 GKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           GKKRKDT+ IV  DD  ++   R+N+ VR NLR+RLGD+V++H CPD
Sbjct: 71  GKKRKDTVLIVLIDDELEDGACRINRVVRNNLRIRLGDLVTIHPCPD 117

>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48|
          Length = 815

 Score =  129 bits (325), Expect = 3e-30
 Identities = 63/111 (56%), Positives = 85/111 (76%)
 Frame = +1

Query: 115 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDT 294
           QGE +   D  + +D +TAIL +K+ PN LVVD+ATNDDNSV+ L  +TME LQLFRGDT
Sbjct: 18  QGE-NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDT 76

Query: 295 VLLKGKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           V++KGK+RKDT+ IV  D+  ++   R+N+ VR NLRVRLGD+V+++ CPD
Sbjct: 77  VVVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPD 127

>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1|
           (p97/CDC48 homolog 1)
          Length = 809

 Score =  118 bits (295), Expect = 8e-27
 Identities = 57/109 (52%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
 Frame = +1

Query: 124 PSSSADPKAKKD-YSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 300
           P+  ++ + K D  STAIL+ K  PNRL+VD++  DDNSV+A+    M+ L LFRGD V+
Sbjct: 5   PTHQSEKEKKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVI 64

Query: 301 LKGKKRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSVHQCPD 447
           LKGKKRK+++ I+ +D++C   KVRMN+ VR NLR+RLGDVVS+   P+
Sbjct: 65  LKGKKRKESVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPN 113

>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2|
           (p97/CDC48 homolog 2)
          Length = 810

 Score =  113 bits (282), Expect = 2e-25
 Identities = 57/100 (57%), Positives = 74/100 (74%), Gaps = 2/100 (2%)
 Frame = +1

Query: 139 DPKAKK--DYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGK 312
           D K KK  + +TAIL+ KK PNRL++D++ NDDNS+V L    M+ L LFRGD+V+LKGK
Sbjct: 9   DEKEKKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGK 68

Query: 313 KRKDTICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVSV 432
           KR++T+ IV   D C   K++MNK VR NLR RLGDVVS+
Sbjct: 69  KRRETVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSI 108

>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase|
          Length = 1229

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
 Frame = +1

Query: 175 LERKKSPNRLVVDEAT-NDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVHADD 351
           L+  K P   +V+    N DN  + +  + M+ L +  G TVLLKGKK+++ + I   D 
Sbjct: 333 LDSGKFPTYCLVENIDENLDNFDIYMSKEKMDELNINDGATVLLKGKKKREMLGIARLDR 392

Query: 352 TCDEPKVRMNKTVRKNLRVRLGDVVSVH 435
           +  +  V ++  ++KNLR+   D++ +H
Sbjct: 393 SLKKHYVVISFAMKKNLRLMHNDIIKIH 420

>Y1156_METJA (Q58556) Cell division cycle protein 48 homolog MJ1156|
          Length = 903

 Score = 33.1 bits (74), Expect = 0.32
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
 Frame = +1

Query: 202 LVVDEATNDD--NSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVHADDTCDEPK-- 369
           L V EA   D    +  + P TME L L  GD + ++G K K    IV+     D  K  
Sbjct: 5   LKVAEAYQGDVGRGIARIDPYTMEELGLKPGDVIEIEGPKGK-AYAIVYRGFLEDAGKGI 63

Query: 370 VRMNKTVRKNLRVRLGDVVSV 432
           +R++  +R+N  V +GD V V
Sbjct: 64  IRIDGYLRQNAGVAIGDRVKV 84

>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3|
           (EC 2.7.11.1)
          Length = 1309

 Score = 32.0 bits (71), Expect = 0.71
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 419 SPSLTLKFFLTVLFILTFGSSHVSSA*TMQIVSFLFLPLRRTVSPRKSWSL-SMVSGWRA 243
           +PS TL   L+ L + T GSS + S       S L  P  R    R+ WSL S+ S    
Sbjct: 37  TPSPTLSRPLSPLSVPTAGSSPLDSPRNFSAASALNFPFARRADGRR-WSLASLPSSGYG 95

Query: 242 TTELSSLVASSTTRR 198
           T   SS ++SS++ R
Sbjct: 96  TNTPSSTLSSSSSSR 110

>MBP1_YEAST (P39678) Transcription factor MBP1 (MBF subunit p120)|
          Length = 833

 Score = 31.6 bits (70), Expect = 0.93
 Identities = 25/95 (26%), Positives = 45/95 (47%)
 Frame = +1

Query: 145 KAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKD 324
           K K +Y   +L      N+L+ DE     N+ V    +T+ERL+L +  T+L   +K K 
Sbjct: 714 KQKLEYRQTVLL-----NKLIEDETQATTNNTVEKDNNTLERLELAQELTMLQLQRKNKL 768

Query: 325 TICIVHADDTCDEPKVRMNKTVRKNLRVRLGDVVS 429
           +  +   +D     K R  + +R+   + + +V S
Sbjct: 769 SSLVKKFEDNAKIHKYR--RIIREGTEMNIEEVDS 801

>SAV_SULAC (Q07590) SAV protein|
          Length = 780

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +1

Query: 208 VDEATNDD--NSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVHADDTCDEPKVRMN 381
           V EA   D    V  +   +M +L +  GD + + G+     +  V       + ++R++
Sbjct: 42  VTEARQRDVGKKVARISETSMRKLNVEAGDYIEIIGQDGNSALAQVMPAYDISDDEIRID 101

Query: 382 KTVRKNLRVRLGDVVSVHQ 438
             +RK+++V +GD V+V +
Sbjct: 102 GYIRKSIKVGIGDDVTVRK 120

>AVP_PHAAU (P21616) Pyrophosphate-energized vacuolar membrane proton pump (EC|
           3.6.1.1) (Pyrophosphate-energized inorganic
           pyrophosphatase) (H(+)-PPase) (Vacuolar
           H(+)-pyrophosphatase)
          Length = 764

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = -2

Query: 431 TDTTSPSLTLKFFLTVLFILTFGSSHVSSA*TMQIVSFLFLPLRRTVSPRKSWSLSMVSG 252
           T T  P+L    F TV F+L   +S VS    M+I +  +   R T+  RK    + ++ 
Sbjct: 128 TKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIAT--YANARTTLEARKGVGKAFITA 185

Query: 251 WRATTELSSLVASS 210
           +R+   +  L+A++
Sbjct: 186 FRSGAVMGFLLAAN 199

>BBM1_BRANA (Q8L3U3) Protein BABY BOOM 1 (BnBBM1)|
          Length = 579

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +1

Query: 139 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 237
           DP A  D S+AI     SP  +VVD  T D+NS
Sbjct: 40  DPTAASDESSAIQTSFPSPFGVVVDAFTRDNNS 72

>POLG_TEV (P04517) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral geno
          Length = 3054

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 118  GEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFR 285
            G+PS+  D       +      K   N+  +    N D+ ++A+HPD  ERL  F+
Sbjct: 2590 GQPSTVVDNTLMVIIAMLYTCEKCGINKEEIVYYVNGDDLLIAIHPDKAERLSRFK 2645

>DP2L_METTH (O27579) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
          Length = 1092

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 25/83 (30%), Positives = 36/83 (43%)
 Frame = +1

Query: 184 KKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVHADDTCDE 363
           +K   RL    A N   + + +HP TME LQ     T +   +  K   C+V   DT D 
Sbjct: 309 EKGAFRLRYGRARNTGLAAMGVHPATMELLQFLAVGTQMKIERPGKGN-CVVPV-DTIDG 366

Query: 364 PKVRMNKTVRKNLRVRLGDVVSV 432
           P V++          R GDV+ +
Sbjct: 367 PVVKL----------RNGDVIRI 379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,892,041
Number of Sequences: 219361
Number of extensions: 648289
Number of successful extensions: 1766
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)