>VG28_BPMU (Q9T1W6) Protein gp28|
          Length = 551

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 204 PGREIQIRRFRGSERYSRVTSQSRHGLLQ 290
           P R+I + RF   + +  +T Q RHG++Q
Sbjct: 301 PARDIPVLRFEAPDDFESLTPQMRHGIVQ 329

>MRS3_YEAST (P10566) Mitochondrial RNA-splicing protein MRS3|
          Length = 314

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 96  VLKESSFRYSSPEFSMTPVVHCSVGTIS 179
           V+ ESS ++ +P     P++HC  G+IS
Sbjct: 202 VIYESSTKFLNPSNEYNPLIHCLCGSIS 229

>XERCL_PSEAE (Q9F771) Tyrosine recombinase xerC-like|
          Length = 427

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 324 KRSWSSANNRLRTLSAAAVETDVAVEGSSSP 416
           KRSW++ +N LRT+   A+E ++      +P
Sbjct: 63  KRSWNTYSNHLRTIWGYAIEHELVTHSQVNP 93

>PCDA9_PANTR (Q5DRE3) Protocadherin alpha 9 precursor (PCDH-alpha9)|
          Length = 950

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 285 LQPQTPFHLISMYKRSWSSANNR-LRTLSAAAVETDVAVEGSSSPS 419
           L P  PF L+S YK  +S   +R L   S +A E  V      SPS
Sbjct: 389 LTPHVPFKLVSTYKNYYSLVLDRALDRESVSAYELVVTARDGGSPS 434

>PCDA9_HUMAN (Q9Y5H5) Protocadherin alpha 9 precursor (PCDH-alpha9)|
          Length = 950

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 285 LQPQTPFHLISMYKRSWSSANNR-LRTLSAAAVETDVAVEGSSSPS 419
           L P  PF L+S YK  +S   +R L   S +A E  V      SPS
Sbjct: 389 LTPHVPFKLVSTYKNYYSLVLDRALDRESVSAYELVVTARDGGSPS 434

>MENF_PASMU (Q9CPI5) Menaquinone-specific isochorismate synthase (EC 5.4.4.2)|
           (Isochorismate mutase)
          Length = 431

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -3

Query: 317 ADQVEWCLWLQQPMARLR 264
           ADQ EWC W++Q + +++
Sbjct: 160 ADQAEWCRWVEQGLQKIK 177

>DDL_MYCSM (Q9ZGN0) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine|
           synthetase) (D-Ala-D-Ala ligase)
          Length = 373

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 303 FHLISMYKRSWSSANNRLRTLSAAAVETDVA 395
           F  ISMY R W++      TL AA V+T +A
Sbjct: 337 FTTISMYPRMWAAGGIDYPTLLAAMVDTAIA 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,529,966
Number of Sequences: 219361
Number of extensions: 947534
Number of successful extensions: 2104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2104
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)