Clone Name | bastl27g08 |
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Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 128 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 187 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 21695378 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 21695437 Query: 188 cataggcagcttcaggcccggccgagaaatacagataagaaggttccgtggttcagagag 247 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 21695438 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 21695497 Query: 248 gtattcaagagt 259 |||||||||||| Sbjct: 21695498 gtattcaagagt 21695509 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 364 tgtcagcagcagctgttgagactgatgtt 392 ||||||||||| |||||| |||||||||| Sbjct: 21695605 tgtcagcagcaactgttgggactgatgtt 21695633
>dbj|AK069200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A08, full insert sequence Length = 2554 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 128 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 187 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 245 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 304 Query: 188 cataggcagcttcaggcccggccgagaaatacagataagaaggttccgtggttcagagag 247 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 305 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 364 Query: 248 gtattcaagagt 259 |||||||||||| Sbjct: 365 gtattcaagagt 376 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 364 tgtcagcagcagctgttgagactgatgtt 392 ||||||||||| |||||| |||||||||| Sbjct: 472 tgtcagcagcaactgttgggactgatgtt 500
>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full insert sequence Length = 3861 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 128 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 187 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 238 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 297 Query: 188 cataggcagcttcaggcccggccgagaaatacagataagaaggttccgtggttcagagag 247 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 298 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 357 Query: 248 gtattcaagagt 259 |||||||||||| Sbjct: 358 gtattcaagagt 369 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 364 tgtcagcagcagctgttgagactgatgtt 392 ||||||||||| |||||| |||||||||| Sbjct: 465 tgtcagcagcaactgttgggactgatgtt 493
>dbj|AK065699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H04, full insert sequence Length = 2068 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 128 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 187 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 245 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 304 Query: 188 cataggcagcttcaggcccggccgagaaatacagataagaaggttccgtggttcagagag 247 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 305 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 364 Query: 248 gtattcaagagt 259 |||||||||||| Sbjct: 365 gtattcaagagt 376 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 364 tgtcagcagcagctgttgagactgatgtt 392 ||||||||||| |||||| |||||||||| Sbjct: 472 tgtcagcagcaactgttgggactgatgtt 500
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Plus Query: 128 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 187 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 21623723 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 21623782 Query: 188 cataggcagcttcaggcccggccgagaaatacagataagaaggttccgtggttcagagag 247 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 21623783 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 21623842 Query: 248 gtattcaagagt 259 |||||||||||| Sbjct: 21623843 gtattcaagagt 21623854 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 364 tgtcagcagcagctgttgagactgatgtt 392 ||||||||||| |||||| |||||||||| Sbjct: 21623950 tgtcagcagcaactgttgggactgatgtt 21623978
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 111 bits (56), Expect = 2e-21 Identities = 113/132 (85%) Strand = Plus / Minus Query: 128 ccctgaattcagcatgacgccggtggttcattgctctgttggcaccatcagcctgttcca 187 |||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||||| Sbjct: 117173 ccctaaattcaaaatgaccccggtggttcattgctctgttggcaatatcagcctgttcca 117114 Query: 188 cataggcagcttcaggcccggccgagaaatacagataagaaggttccgtggttcagagag 247 ||| ||||| |||||||| ||| ||||| || ||||| |||||||| | ||||||| Sbjct: 117113 catcggcagtttcaggccaagccatgaaatccaaataaggaggttccgcagcacagagag 117054 Query: 248 gtattcaagagt 259 |||||||||||| Sbjct: 117053 gtattcaagagt 117042 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 364 tgtcagcagcagctgttgagactgatgtt 392 ||||||||||| |||||| |||||||||| Sbjct: 116946 tgtcagcagcaactgttgggactgatgtt 116918
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 66 ccgcgggagctcgccgtcgccc 87 |||||||||||||||||||||| Sbjct: 16855236 ccgcgggagctcgccgtcgccc 16855257
>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1163_C07 Length = 107121 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 66 ccgcgggagctcgccgtcgccc 87 |||||||||||||||||||||| Sbjct: 52927 ccgcgggagctcgccgtcgccc 52948
>dbj|AK063736.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-F03, full insert sequence Length = 535 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 66 ccgcgggagctcgccgtcgccc 87 |||||||||||||||||||||| Sbjct: 127 ccgcgggagctcgccgtcgccc 148
>dbj|D85517.1| Mesocricetus auratus gene for chymase 1, complete cds Length = 3888 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 280 ggctgctgcagccacagacacc 301 |||||||||||||||||||||| Sbjct: 3865 ggctgctgcagccacagacacc 3844
>gb|AC153488.1| Tribolium castaneum BAC T.cast_C24H10 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 40580 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 cccagcgacccctccgcctcctcct 38 |||||||||||||||| |||||||| Sbjct: 25930 cccagcgacccctccgtctcctcct 25954
>gb|AC152927.1| Tribolium castaneum BAC T.cast_C19N19 (Clemson University Genomics Institute Tribolium castaneum BAC Library (Red Flour Beetle)) complete sequence Length = 137018 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 14 cccagcgacccctccgcctcctcct 38 |||||||||||||||| |||||||| Sbjct: 27876 cccagcgacccctccgtctcctcct 27852
>ref|NM_020248.2| Homo sapiens catenin, beta interacting protein 1 (CTNNBIP1), transcript variant 1, mRNA Length = 2995 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 tggcaccatcagcctgttcca 187 ||||||||||||||||||||| Sbjct: 2405 tggcaccatcagcctgttcca 2425
>ref|NM_001012329.1| Homo sapiens catenin, beta interacting protein 1 (CTNNBIP1), transcript variant 2, mRNA Length = 2961 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 tggcaccatcagcctgttcca 187 ||||||||||||||||||||| Sbjct: 2371 tggcaccatcagcctgttcca 2391
>emb|AL357140.33| Human DNA sequence from clone RP11-84A14 on chromosome 1 Contains the 5' end of the CLSTN1 gene for calsyntenin 1, the CTNNBIP1 gene for catenin, beta interacting protein 1, two novel genes, the LZIC gene for leucine zipper and CTNNBIP1 domain containing, the 5' end of the NMNAT1 gene for nicotinamide nucleotide adenylyltransferase 1 and a CpG island, complete sequence Length = 177470 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 tggcaccatcagcctgttcca 187 ||||||||||||||||||||| Sbjct: 53733 tggcaccatcagcctgttcca 53713
>emb|X79328.1|RNCABP1 R.norvegicus (Wistar) CaBP1 mRNA Length = 1296 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 atgggctgctgcagccacaga 297 ||||||||||||||||||||| Sbjct: 570 atgggctgctgcagccacaga 590
>emb|CR606136.1| full-length cDNA clone CS0DD003YG21 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 946 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 tggcaccatcagcctgttcca 187 ||||||||||||||||||||| Sbjct: 376 tggcaccatcagcctgttcca 396
>ref|NM_001039430.1| Tribolium castaneum abdominal-B (abd-B), mRNA Length = 2683 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 cccagcgacccctccgcctcctcct 38 |||||||||||||||| |||||||| Sbjct: 539 cccagcgacccctccgtctcctcct 563
>ref|XM_576132.1| PREDICTED: Rattus norvegicus thioredoxin domain containing 7 (Txndc7), mRNA Length = 2122 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 atgggctgctgcagccacaga 297 ||||||||||||||||||||| Sbjct: 641 atgggctgctgcagccacaga 661
>gb|AF227923.1|AF227923 Tribolium castaneum abdominal-B mRNA, complete cds Length = 2683 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 cccagcgacccctccgcctcctcct 38 |||||||||||||||| |||||||| Sbjct: 539 cccagcgacccctccgtctcctcct 563
>gb|BC082063.1| Rattus norvegicus protein disulfide isomerase associated 6, mRNA (cDNA clone MGC:95222 IMAGE:7132589), complete cds Length = 1744 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 atgggctgctgcagccacaga 297 ||||||||||||||||||||| Sbjct: 630 atgggctgctgcagccacaga 650
>ref|NM_001004442.1| Rattus norvegicus protein disulfide isomerase associated 6 (Pdia6), mRNA Length = 1744 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 277 atgggctgctgcagccacaga 297 ||||||||||||||||||||| Sbjct: 630 atgggctgctgcagccacaga 650
>dbj|AB021262.1| Homo sapiens mRNA for beta-catenin-interacting protein ICAT, complete cds Length = 2980 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 tggcaccatcagcctgttcca 187 ||||||||||||||||||||| Sbjct: 2371 tggcaccatcagcctgttcca 2391
>ref|XM_550264.1| Oryza sativa (japonica cultivar-group), mRNA Length = 378 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 cagcgacccctccgcctcctcctc 39 ||||||||||||| |||||||||| Sbjct: 207 cagcgacccctcctcctcctcctc 184
>ref|NM_188669.1| Oryza sativa (japonica cultivar-group), Ozsa8272 predicted mRNA Length = 1242 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 cagcgacccctccgcctcctcctc 39 ||||||||||||| |||||||||| Sbjct: 538 cagcgacccctcctcctcctcctc 515
>gb|AC163295.2| Mus musculus BAC clone RP23-132K20 from chromosome 14, complete sequence Length = 212576 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ccacagacaccattccacct 310 |||||||||||||||||||| Sbjct: 66073 ccacagacaccattccacct 66092
>gb|BT018681.1| Zea mays clone EL01N0511F02.d mRNA sequence Length = 1696 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 22 cccctccgcctcctcctcagcgctccct 49 ||||||| ||||||||||| |||||||| Sbjct: 57 cccctcctcctcctcctcatcgctccct 30
>gb|AY022736.1| Oryza sativa microsatellite MRG5061 containing (CCT)X8, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 cagcgacccctccgcctcctcctc 39 ||||||||||||| |||||||||| Sbjct: 93 cagcgacccctcctcctcctcctc 116
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 gcgggagctcgccgtcgccc 87 |||||||||||||||||||| Sbjct: 1694630 gcgggagctcgccgtcgccc 1694611
>ref|XM_414581.1| PREDICTED: Gallus gallus similar to ring finger protein 127 (LOC416263), mRNA Length = 3615 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 cagcgacccctccgcctcctcctc 39 |||||||||||||||||| ||||| Sbjct: 1797 cagcgacccctccgcctcatcctc 1820
>emb|AL160396.33| Human DNA sequence from clone RP11-569D9 on chromosome 13 Contains the CDC16 gene for CDC16 cell division cycle 16 homolog (S. cerevisiae), the gene for similar to yeast Upf3, variant A (UPF3A, HUPF3A, RENT3A), a Charot-Leyden crystal protein (CLC) pseudogene, the 5' end of the gene for a novel protein (KIAA1802) and 6 CpG islands, complete sequence Length = 172437 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 gctccctctcctcaccacgg 62 |||||||||||||||||||| Sbjct: 19612 gctccctctcctcaccacgg 19631
>emb|AL158163.11| Human DNA sequence from clone RP11-348N5 on chromosome 10 Contains the 3' end of the PDCD4 gene for programmed cell death 4 (neoplastic transformation inhibitor)(H731, MGC33046, MGC33047), a novel gene (LOC92482), the SHOC2 gene for soc-2 suppressor of clear homolog (C. elegans)(SOC2, SUR8, SOC-2, SUR-8, KIAA0862, SIAA0862), ribosomal protein L13a pseudogene 6 (RPL13AP6), the ADRA2A gene for adrenergic, alpha-2A-, receptor (alpha-2AAR subtype C10)(ADRA2, ADRAR, ZNF32, ADRA2R) and two CpG islands, complete sequence Length = 204908 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 caaaagaagctggtcctctgccaa 346 |||||||| ||||||||||||||| Sbjct: 135791 caaaagaatctggtcctctgccaa 135768
>gb|AC040970.7| Homo sapiens chromosome 8, clone RP11-809O17, complete sequence Length = 183894 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cagccacagacaccattcca 307 |||||||||||||||||||| Sbjct: 19300 cagccacagacaccattcca 19281
>gb|AC040904.4| Homo sapiens chromosome 17, clone RP11-619I22, complete sequence Length = 173651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ccctccgcctcctcctcagc 42 |||||||||||||||||||| Sbjct: 123299 ccctccgcctcctcctcagc 123280
>gb|AC100860.2| Homo sapiens chromosome 8, clone RP11-128L5, complete sequence Length = 181610 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 cagccacagacaccattcca 307 |||||||||||||||||||| Sbjct: 34638 cagccacagacaccattcca 34657
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 cagcgacccctccgcctcctcctc 39 ||||||||||||| |||||||||| Sbjct: 7526435 cagcgacccctcctcctcctcctc 7526458 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 cagcgacccctccgcctcctcctc 39 ||||||||||||| |||||||||| Sbjct: 3574225 cagcgacccctcctcctcctcctc 3574202
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 cagcgacccctccgcctcctcctc 39 ||||||||||||| |||||||||| Sbjct: 75227 cagcgacccctcctcctcctcctc 75250
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 cagcgacccctccgcctcctcctc 39 ||||||||||||| |||||||||| Sbjct: 142293 cagcgacccctcctcctcctcctc 142270 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,995,272 Number of Sequences: 3902068 Number of extensions: 3995272 Number of successful extensions: 85296 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84944 Number of HSP's gapped (non-prelim): 352 length of query: 421 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 399 effective length of database: 17,147,199,772 effective search space: 6841732709028 effective search space used: 6841732709028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)