ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27g07 |
|---|---|
| Clone Library Name | barley_pub |
>SDE3_ARATH (Q8GYD9) Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing| defective protein 3) Length = 1002 Score = 60.8 bits (146), Expect = 7e-10 Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 1/55 (1%) Frame = +2 Query: 224 GHHSNDEYSVAGDKPEVEFMDFQNDNTLQDYQS-DDGPVVVTAPFPFVNGEPKSV 385 G+ S+DEYSV DK E+ F+D+QND + Y D+GPVVV+ PFPF +P+SV Sbjct: 5 GYKSDDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFPFKKEKPQSV 59
>SODC_BRUSU (P66827) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 174 Score = 32.3 bits (72), Expect = 0.28 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Frame = +2 Query: 89 HASPSDSHHHLVPDGGLIQSNL------------SAAVPPHLRSPARLRASPRGFKMGHH 232 H P ++HHHL P+G +L V PHL+ A ++ + M H Sbjct: 93 HYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVAPHLKKLAEIK---QRSLMVHV 149 Query: 233 SNDEYSVAGDKPE 271 D YS DKPE Sbjct: 150 GGDNYS---DKPE 159
>SODC_BRUME (P66826) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 174 Score = 32.3 bits (72), Expect = 0.28 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Frame = +2 Query: 89 HASPSDSHHHLVPDGGLIQSNL------------SAAVPPHLRSPARLRASPRGFKMGHH 232 H P ++HHHL P+G +L V PHL+ A ++ + M H Sbjct: 93 HYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVAPHLKKLAEIK---QRSLMVHV 149 Query: 233 SNDEYSVAGDKPE 271 D YS DKPE Sbjct: 150 GGDNYS---DKPE 159
>SODC_BRUAB (P15453) Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1)| Length = 173 Score = 32.3 bits (72), Expect = 0.28 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Frame = +2 Query: 89 HASPSDSHHHLVPDGGLIQSNL------------SAAVPPHLRSPARLRASPRGFKMGHH 232 H P ++HHHL P+G +L V PHL+ A ++ + M H Sbjct: 92 HYDPGNTHHHLGPEGDGHMGDLPRLSANADGKVSETVVAPHLKKLAEIK---QRSLMVHV 148 Query: 233 SNDEYSVAGDKPE 271 D YS DKPE Sbjct: 149 GGDNYS---DKPE 158
>MPC2_RALEU (P17296) Metapyrocatechase 2 (EC 1.13.11.2) (MPC) (CatO2ase)| (Catechol 2,3-dioxygenase II) Length = 320 Score = 31.6 bits (70), Expect = 0.48 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 125 PDGGLIQSNLSAAVPPHLRSPARLRASPRG 214 PDG L+Q + P +SPARL +P G Sbjct: 121 PDGNLVQVKIGPKTSPSSKSPARLEGAPGG 150
>FAR2_CAEEL (P34383) Fatty-acid and retinol-binding protein 2 precursor| Length = 182 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +2 Query: 224 GHHSNDEYSVAGDKPEVEFMDFQNDNTLQDYQ--SDDGPVVVTAPFPFVNG 370 G + +Y +AGDKP ++ + + +Y+ SDD +TA FP + G Sbjct: 117 GRELHQQY-LAGDKPTLDSLKELAKGYIAEYKALSDDAKATITAEFPILTG 166
>SENP6_HUMAN (Q9GZR1) Sentrin-specific protease 6 (EC 3.4.22.-)| (Sentrin/SUMO-specific protease SENP6) (SUMO-1-specific protease 1) Length = 1112 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = +2 Query: 236 NDEYSVAGDKPEVEFMDFQNDNTLQDYQSDDG 331 +DE AG E E +DF D QD SDDG Sbjct: 916 SDESPEAGKMLEDELVDFSEDQDNQDDSSDDG 947
>CSPG3_PANTR (Q5IS41) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 101 SDSHHHLVPDGGL-IQSNLSAAVPPHLRSPARLRASPRGFKMGHHSNDEYSVAGDKPEV 274 S S H P+ + Q A+VPPH SP A P G + SV+ +P V Sbjct: 893 SSSQPHPEPEDQVETQGTSGASVPPHQSSPLGKPAVPPGTPTAASVGESASVSSGEPTV 951
>CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Frame = +2 Query: 101 SDSHHHLVPDGGL-IQSNLSAAVPPHLRSPARLRASPRGFKMGHHSNDEYSVAGDKPEV 274 S S H P+ + Q A+VPPH SP A P G + SV+ +P V Sbjct: 893 SSSQPHPEPEDQVETQGTSGASVPPHQSSPLGKPAVPPGTPTAASVGESASVSSGEPTV 951
>TIG_DESPS (Q6AK58) Trigger factor (TF)| Length = 441 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +2 Query: 230 HSNDEYSVAGDKPEVEFMDFQNDNTLQDYQSDDGPV 337 H D +V GD V+F F+N L +SDD V Sbjct: 152 HVVDRPAVDGDMVTVDFQGFENGEALAQVKSDDHQV 187
>GBPA_PHOPR (Q6LKG5) GlcNac-binding protein A precursor| Length = 488 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Frame = +2 Query: 128 DGGLIQSNLSAAVPPHLRSPARLRASPRGFKMGHHSNDEYSVAGDKPEVEFMDFQNDNTL 307 D + LS + P H R++ S G + +ND + G P D+ L Sbjct: 375 DSQAVSMRLSKSEPGHHMLVTRIKDSSEGSLIDQITNDFHLTEGGDPPEGDYDYIFPEGL 434 Query: 308 QDYQ------SDDGPVVVTAPFPF 361 + Y + DG + PFP+ Sbjct: 435 KSYTAGSKVLATDGRIYECKPFPY 458
>BLNK_CHICK (Q9YGC1) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter SH2 domain-containing protein) Length = 552 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Frame = +2 Query: 77 TRTAHASPSDSHHHLVPDGGLIQSNLSAAVP----PHLRSPARLRASPRGFKMGHHSNDE 244 +R +A SHH L P + S S+A+P P L SPA P + D Sbjct: 134 SRGEYADNRTSHHQLPPINKPLPSTPSSALPRPKKPSLPSPAAKPKLPLKPRECSDDEDN 193 Query: 245 YSVAGDKPEVEFMDFQNDNT 304 Y V D + +++ +T Sbjct: 194 YIVPVDNDDDNYIEPTESST 213
>SI1L1_HUMAN (O43166) Signal-induced proliferation-associated 1-like protein 1| (High-risk human papilloma viruses E6 oncoproteins targeted protein 1) (E6-targeted protein 1) Length = 1803 Score = 27.7 bits (60), Expect = 7.0 Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 5/120 (4%) Frame = +2 Query: 2 SPLSSAGAITHXXXXXXXXXXXXXXTRTAHASPSDSHHHLVPDGGLIQSNLSAAVPPHLR 181 S S A +H +A +SP + H P + + P Sbjct: 1412 STFSINDAASHTSTMSSRHSASPVVFTSARSSPKEELHPAAP----------SQLAPSFS 1461 Query: 182 SPARLRASPRGFKMGHHSNDEYSVAGDKPE-----VEFMDFQNDNTLQDYQSDDGPVVVT 346 S + + PR F + +Y + KPE V FMD T + +QSD + T Sbjct: 1462 SSSSSSSGPRSFYPRQGATSKYLIGWKKPEGTINSVGFMD-----TRKRHQSDGNEIAHT 1516
>BCAR1_HUMAN (P56945) Breast cancer anti-estrogen resistance protein 1| (CRK-associated substrate) (p130cas) Length = 870 Score = 27.7 bits (60), Expect = 7.0 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = +2 Query: 122 VPDGGLIQSNLSAAVPPHLR-SPA---RLRASPRGFKMGHHSNDEYSVAG 259 V DGG++ S + A PP R +PA RL AS G S VAG Sbjct: 399 VADGGVVDSGVYAVPPPAEREAPAEGKRLSASSTGSTRSSQSASSLEVAG 448
>YBOX1_XENLA (P21573) Nuclease sensitive element-binding protein 1 (Y-box| binding protein 1) (Y-box transcription factor) Length = 303 Score = 27.3 bits (59), Expect = 9.1 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +2 Query: 125 PDGGLIQSNLSAAVPPHLRSPARLRASPRGFKMGHHSNDEYSVAGDKPE 271 P+G +Q + AA H R R R PR ++ + +N+ +G+K E Sbjct: 106 PEGVPVQGSKYAADRNHYRRYPRRRGPPRNYQQNYQNNE----SGEKAE 150
>STRP_STRS1 (P10519) Streptokinase G precursor| Length = 440 Score = 27.3 bits (59), Expect = 9.1 Identities = 23/79 (29%), Positives = 34/79 (43%) Frame = +2 Query: 77 TRTAHASPSDSHHHLVPDGGLIQSNLSAAVPPHLRSPARLRASPRGFKMGHHSNDEYSVA 256 +R AH ++ L P L ++ S A+P L L+A HSND+Y Sbjct: 70 SRPAHGGKTEQG--LSPKSKLFATD-SGAMPHKLEKADLLKAIQEQLIANVHSNDDY--- 123 Query: 257 GDKPEVEFMDFQNDNTLQD 313 E +DF +D T+ D Sbjct: 124 -----FEVIDFASDATITD 137
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +2 Query: 188 ARLRASPRGFKMGHHSNDEYSVAGDKPEVEF--MDFQNDNTLQDYQSDD 328 +R+ + R F G+ +D+Y GD+ E + D ++ ++ DY DD Sbjct: 272 SRIGSGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDD 320
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Frame = +2 Query: 188 ARLRASPRGFKMGHHSNDEYSVAGDKPEVEF--MDFQNDNTLQDYQSDD 328 +R+ + R F G+ +D+Y GD+ E + D ++ ++ DY DD Sbjct: 272 SRIGSGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDD 320 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,275,883 Number of Sequences: 219361 Number of extensions: 777597 Number of successful extensions: 2001 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1970 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2000 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
