ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 3e-04
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
3gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome... 54 3e-04
4dbj|AK068372.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
5gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
6gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
7gb|DQ017380.1| Trichoplusia ni single nucleopolyhedrovirus, comp... 40 5.2
8gb|AC126277.3| Mus musculus BAC clone RP23-161L22 from 12, compl... 40 5.2
9gb|AC097659.3| Homo sapiens BAC clone RP11-408C24 from 4, comple... 40 5.2
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
11dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 5.2
12gb|AC096651.1| Homo sapiens BAC clone RP11-16J15 from 4, complet... 40 5.2
13gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park C... 40 5.2
14dbj|AK068090.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
16emb|AM050332.1| Unidentified microorganism phagemid clone pBKR.41 40 5.2 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                           
Query: 231     attcaaatgatgagtactctgtagctggtgataagcccgaagtagagttcatggattttc 290
               ||||| ||||||| | |||||| ||||| || ||||| || |||||||||||||| | ||
Sbjct: 3201000 attcagatgatgaattctctgtggctggcgagaagccagatgtagagttcatggactatc 3200941

                      
Query: 291     agaatga 297
               |||||||
Sbjct: 3200940 agaatga 3200934
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                           
Query: 231     attcaaatgatgagtactctgtagctggtgataagcccgaagtagagttcatggattttc 290
               ||||| ||||||| | |||||| ||||| || ||||| || |||||||||||||| | ||
Sbjct: 3201111 attcagatgatgaattctctgtggctggcgagaagccagatgtagagttcatggactatc 3201052

                      
Query: 291     agaatga 297
               |||||||
Sbjct: 3201051 agaatga 3201045
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>gb|AC119797.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0083G16, complete sequence
          Length = 145590

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                         
Query: 231   attcaaatgatgagtactctgtagctggtgataagcccgaagtagagttcatggattttc 290
             ||||| ||||||| | |||||| ||||| || ||||| || |||||||||||||| | ||
Sbjct: 25873 attcagatgatgaattctctgtggctggcgagaagccagatgtagagttcatggactatc 25814

                    
Query: 291   agaatga 297
             |||||||
Sbjct: 25813 agaatga 25807
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>dbj|AK068372.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151B11, full
           insert sequence
          Length = 3650

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 231 attcaaatgatgagtactctgtagctggtgataagcccgaagtagagttcatggattttc 290
           ||||| ||||||| | |||||| ||||| || ||||| || |||||||||||||| | ||
Sbjct: 476 attcagatgatgaattctctgtggctggcgagaagccagatgtagagttcatggactatc 535

                  
Query: 291 agaatga 297
           |||||||
Sbjct: 536 agaatga 542
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>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057M18 map near E10005S, complete sequence
          Length = 140920

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    ctccttccgactcccaccaccacc 119
             |||||||| |||||||||||||||
Sbjct: 30582 ctccttcccactcccaccaccacc 30559
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>gb|AC128642.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OJ1115_A03
             map S20262S, complete sequence
          Length = 149553

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    ctccttccgactcccaccaccacc 119
             |||||||| |||||||||||||||
Sbjct: 79043 ctccttcccactcccaccaccacc 79066
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>gb|DQ017380.1| Trichoplusia ni single nucleopolyhedrovirus, complete genome
          Length = 134394

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 207   ctcgaggattcaagatggggcatcattc 234
             |||||| |||||||||||||||| ||||
Sbjct: 78143 ctcgagaattcaagatggggcattattc 78170
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>gb|AC126277.3| Mus musculus BAC clone RP23-161L22 from 12, complete sequence
          Length = 191231

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 279   tcatggattttcagaatgac 298
             ||||||||||||||||||||
Sbjct: 82461 tcatggattttcagaatgac 82480
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>gb|AC097659.3| Homo sapiens BAC clone RP11-408C24 from 4, complete sequence
          Length = 131944

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 269 gaagtagagttcatggattttcagaatg 296
           ||||| |||||||||| |||||||||||
Sbjct: 416 gaagtggagttcatggcttttcagaatg 389
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 96       ctccttccgactcccaccaccacc 119
                |||||||| |||||||||||||||
Sbjct: 13671942 ctccttcccactcccaccaccacc 13671919



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 96       ctccttccgactcccaccaccacc 119
                |||||||| |||||||||||||||
Sbjct: 13362690 ctccttcccactcccaccaccacc 13362713
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    cccaccaccacctcgtcccg 127
              ||||||||||||||||||||
Sbjct: 910944 cccaccaccacctcgtcccg 910963
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>gb|AC096651.1| Homo sapiens BAC clone RP11-16J15 from 4, complete sequence
          Length = 158661

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 269    gaagtagagttcatggattttcagaatg 296
              ||||| |||||||||| |||||||||||
Sbjct: 157077 gaagtggagttcatggcttttcagaatg 157050
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>gb|AC006560.8| Homo sapiens 12 BAC RPCI11-792F18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 202478

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   ttcatggattttcagaatga 297
             ||||||||||||||||||||
Sbjct: 57338 ttcatggattttcagaatga 57357
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>dbj|AK068090.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132N13, full
           insert sequence
          Length = 1354

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  ctccttccgactcccaccaccacc 119
           |||||||| |||||||||||||||
Sbjct: 60  ctccttcccactcccaccaccacc 83
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 96       ctccttccgactcccaccaccacc 119
                |||||||| |||||||||||||||
Sbjct: 13753940 ctccttcccactcccaccaccacc 13753917



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 96       ctccttccgactcccaccaccacc 119
                |||||||| |||||||||||||||
Sbjct: 13442869 ctccttcccactcccaccaccacc 13442892
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>emb|AM050332.1| Unidentified microorganism phagemid clone pBKR.41
          Length = 2802

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 345  cggctcctttcccgtttgtg 364
            ||||||||||||||||||||
Sbjct: 2703 cggctcctttcccgtttgtg 2684


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,929,550
Number of Sequences: 3902068
Number of extensions: 2929550
Number of successful extensions: 55058
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54932
Number of HSP's gapped (non-prelim): 126
length of query: 386
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 364
effective length of database: 17,147,199,772
effective search space: 6241580717008
effective search space used: 6241580717008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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