ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid... 28 9.1
2PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pkn... 28 9.1
3PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pkn... 28 9.1

>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 258

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 49  SPASFPDATGESKVSRRSHALDLT 120
           +P    DATGE  V+R SHA D+T
Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195



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>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
 Frame = +1

Query: 10  PPIPSQKP*TDRPSPASFPDAT---------GESKVSRRS 102
           PP PSQ P   R +PA+ P  T         G +  SRRS
Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319



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>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC|
           2.7.11.1)
          Length = 431

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
 Frame = +1

Query: 10  PPIPSQKP*TDRPSPASFPDAT---------GESKVSRRS 102
           PP PSQ P   R +PA+ P  T         G +  SRRS
Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,199,783
Number of Sequences: 219361
Number of extensions: 306863
Number of successful extensions: 1307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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