ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27f11 |
|---|---|
| Clone Library Name | barley_pub |
>NCKP1_ORYSA (Q6ZBH9) Probable protein NAP1 (Nck-associated protein 1)| (P125Nap1) (NAP of plants) Length = 1359 Score = 135 bits (339), Expect = 4e-32 Identities = 69/73 (94%), Positives = 71/73 (97%) Frame = +1 Query: 1 LLRVTSIDVAMVVLKENLVLPLFRDEYILLHENYQHYVLPKVLESKRMAKSGRTKQKEAD 180 LLRVTSIDVAMVVLKENLVL LFRDEYILLHENYQ YVLPKVLESKRMAKSGRTKQKEAD Sbjct: 326 LLRVTSIDVAMVVLKENLVLSLFRDEYILLHENYQLYVLPKVLESKRMAKSGRTKQKEAD 385 Query: 181 MEYNIAKQVEKML 219 +EYN+AKQVEKML Sbjct: 386 LEYNVAKQVEKML 398
>NCKP1_ARATH (Q5S2C4) Protein NAP1 (Nck-associated protein 1) (AtNAP1)| (AtNAP125) (p125Nap1) (NAP of plants) (ARP2/3 regulatory protein subunit NAPP) (Protein GNARLED) Length = 1425 Score = 110 bits (274), Expect = 1e-24 Identities = 61/102 (59%), Positives = 71/102 (69%), Gaps = 29/102 (28%) Frame = +1 Query: 1 LLRVTSIDVAMVVLKENLVLPLFRDE-----------------------------YILLH 93 LLRVTSID+A+VVLKENLV+ LFRDE YILLH Sbjct: 337 LLRVTSIDIALVVLKENLVVTLFRDEVSLYQMVCEKEFGIGISFASADSINLTMQYILLH 396 Query: 94 ENYQHYVLPKVLESKRMAKSGRTKQKEADMEYNIAKQVEKML 219 E+YQ YVLP+VLESK+MAKSGRTKQKEAD+EY++AKQVEKM+ Sbjct: 397 EDYQLYVLPRVLESKKMAKSGRTKQKEADLEYSVAKQVEKMI 438
>OAZ_YEAST (Q02803) Ornithine decarboxylase antizyme (ODC-Az)| Length = 292 Score = 31.6 bits (70), Expect = 0.59 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%) Frame = +1 Query: 52 LVLPLFRDEYIL--LHENYQHYVLPKVLESKRM 144 L LPLF E I L+ENY H VLP +L S+ + Sbjct: 163 LYLPLFTQELIWCKLNENYFHVVLPSLLNSRNV 195
>DPB3_CANGA (Q6FXJ8) DNA polymerase epsilon subunit C (EC 2.7.7.7) (DNA| polymerase II subunit C) Length = 255 Score = 29.6 bits (65), Expect = 2.2 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%) Frame = +1 Query: 70 RDEYILLHENYQHYVLPKV------LESKRMAKSGRTKQKEADMEYNIAKQ 204 RD+YI L + +H PK L +K + + +QK+A ME +I ++ Sbjct: 92 RDDYIFLEDVVRHIEKPKTSSGLHKLSAKPVGQGQEAEQKDASMEEDIPEE 142
>MFAP1_MOUSE (Q9CQU1) Microfibrillar-associated protein 1| Length = 439 Score = 29.3 bits (64), Expect = 2.9 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +1 Query: 88 LHENYQHYVLPKVLESKRMAKSGRTK 165 L +++ +LPKV++ K +SGRTK Sbjct: 365 LEDHFNKTILPKVMQVKNFGRSGRTK 390
>MFAP1_HUMAN (P55081) Microfibrillar-associated protein 1| Length = 439 Score = 29.3 bits (64), Expect = 2.9 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +1 Query: 88 LHENYQHYVLPKVLESKRMAKSGRTK 165 L +++ +LPKV++ K +SGRTK Sbjct: 365 LEDHFNKTILPKVMQVKNFGRSGRTK 390
>MFA1P_CHICK (P55080) Microfibrillar-associated protein 1 (Associated| microfibril protein) (AMF) Length = 442 Score = 29.3 bits (64), Expect = 2.9 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +1 Query: 88 LHENYQHYVLPKVLESKRMAKSGRTK 165 L +++ +LPKV++ K +SGRTK Sbjct: 368 LEDHFNKTILPKVMQVKNFGRSGRTK 393
>GEX3_CAEEL (P55163) Membrane-associated protein gex-3| Length = 1141 Score = 28.9 bits (63), Expect = 3.8 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = +1 Query: 34 VVLKENLVLPLFRDEYILLHENYQHYVLPKVLESKRM 144 + L+ NL L +FRDE ++H+ Q ++ +SKR+ Sbjct: 283 LALQMNLCLRVFRDETFIVHQEIQAFLESSKEKSKRL 319
>QUEA_SALTY (Q8ZRD9) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 354 Score = 28.9 bits (63), Expect = 3.8 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +1 Query: 10 VTSIDVAMVVLKENLVLPLFRDEYILLHENYQHYVLPKVLESKRMAKS 153 V S++ A K +L+ P F D I ++ YQ+ V+ ++ + + +S Sbjct: 258 VRSLESAAQAAKSDLIEPFFGDTQIFIYPGYQYKVIDALITNFHLPES 305
>QUEA_SALTI (Q8Z8Y1) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 354 Score = 28.9 bits (63), Expect = 3.8 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +1 Query: 10 VTSIDVAMVVLKENLVLPLFRDEYILLHENYQHYVLPKVLESKRMAKS 153 V S++ A K +L+ P F D I ++ YQ+ V+ ++ + + +S Sbjct: 258 VRSLESAAQAAKSDLIEPFFGDTQIFIYPGYQYKVIDALITNFHLPES 305
>QUEA_SALPA (Q5PFT5) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 354 Score = 28.9 bits (63), Expect = 3.8 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +1 Query: 10 VTSIDVAMVVLKENLVLPLFRDEYILLHENYQHYVLPKVLESKRMAKS 153 V S++ A K +L+ P F D I ++ YQ+ V+ ++ + + +S Sbjct: 258 VRSLESAAQAAKSDLIEPFFGDTQIFIYPGYQYKVIDALITNFHLPES 305
>QUEA_SALCH (Q57SF9) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 354 Score = 28.9 bits (63), Expect = 3.8 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = +1 Query: 10 VTSIDVAMVVLKENLVLPLFRDEYILLHENYQHYVLPKVLESKRMAKS 153 V S++ A K +L+ P F D I ++ YQ+ V+ ++ + + +S Sbjct: 258 VRSLESAAQAAKSDLIEPFFGDTQIFIYPGYQYKVIDALITNFHLPES 305
>PHEB_CLOTE (Q899Q4) ACT domain protein pheB| Length = 152 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/33 (30%), Positives = 23/33 (69%) Frame = +1 Query: 70 RDEYILLHENYQHYVLPKVLESKRMAKSGRTKQ 168 +D+Y++++ + V KV+E+K + K+G+ K+ Sbjct: 9 KDKYLMINTSVLPDVFEKVIEAKELMKAGKIKE 41
>DPOA_YEAST (P13382) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA| polymerase I) Length = 1468 Score = 27.7 bits (60), Expect = 8.4 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +1 Query: 70 RDEYILLHE-NYQHYVLPKVLESKRMAKSGRTKQKEADMEYNIAK 201 R+EYILLHE + +++P ++ A+ R ++ AD N K Sbjct: 796 RNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQNEENADAPVNSKK 840 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,299,426 Number of Sequences: 219361 Number of extensions: 415039 Number of successful extensions: 1071 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1059 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1070 length of database: 80,573,946 effective HSP length: 48 effective length of database: 70,044,618 effective search space used: 1681070832 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
