ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483612.1| Oryza sativa (japonica cultivar-group), mRNA 299 2e-78
2dbj|AK071354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 299 2e-78
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 204 8e-50
4dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic D... 204 8e-50
5gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 84 2e-13
6ref|NM_129064.3| Arabidopsis thaliana GRL/NAP1/NAPP; transcripti... 76 5e-11
7ref|NM_001036408.1| Arabidopsis thaliana GRL/NAP1/NAPP AT2G35110... 76 5e-11
8gb|AY787211.1| Arabidopsis thaliana NAP (NAP) mRNA, complete cds... 76 5e-11
9gb|AY496700.1| Arabidopsis thaliana ARP2/3 regulatory protein su... 76 5e-11
10gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map... 76 5e-11
11tpg|BK004072.1| TPA: TPA_exp: Arabidopsis thaliana NAPP (NAPP) g... 76 5e-11
12gb|AY596602.1| Saccharum officinarum clone SCCCLR1C07B03, comple... 72 8e-10
13gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome 46 0.045
14gb|AC154182.2| Mus musculus BAC clone RP23-471C19 from chromosom... 42 0.71
15dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 40 2.8
16gb|AC009682.7| Homo sapiens chromosome 8, clone RP11-72O13, comp... 40 2.8
17gb|AY100469.1| Oryza sativa (indica cultivar-group) putative sol... 40 2.8
18gb|AC152977.1| Mus musculus 10 BAC RP23-251I19 (Roswell Park Can... 40 2.8
19gb|AC103725.5| Homo sapiens chromosome 8, clone RP11-598A18, com... 40 2.8
20dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisu... 40 2.8
21dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
22dbj|AP005857.3| Homo sapiens genomic DNA, chromosome 8q24, clone... 40 2.8
23dbj|AP005790.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 40 2.8
24dbj|AP004925.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 2.8
25dbj|AP004475.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 2.8
26emb|AL627386.8| Mouse DNA sequence from clone RP23-278A10 on chr... 40 2.8 
>ref|XM_483612.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4511

 Score =  299 bits (151), Expect = 2e-78
 Identities = 202/219 (92%)
 Strand = Plus / Plus

                                                                        
Query: 1    ctacttcgggtgacaagtatagatgttgcaatggttgttcttaaagagaacttagtactc 60
            |||||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 1069 ctacttcgagtgaccagtatagatgttgcaatggttgttctgaaagaaaatttagtactc 1128

                                                                        
Query: 61   cctctgttcagagatgagtacatcttgcttcacgagaactatcaacattatgtccttcca 120
             | ||||||||||||||||||||||| || || |||||||||||||  ||||||||||||
Sbjct: 1129 tccctgttcagagatgagtacatcttactccatgagaactatcaactctatgtccttcca 1188

                                                                        
Query: 121  aaagttttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgat 180
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1189 aaagttttagaatcgaagagaatggctaaatctggacgtactaagcaaaaggaagctgat 1248

                                                   
Query: 181  atggaatacaatattgcaaagcaggttgagaagatgtta 219
             ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 1249 ctggaatacaatgttgcaaagcaggttgagaaaatgtta 1287
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>dbj|AK071354.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095B09, full
            insert sequence
          Length = 4512

 Score =  299 bits (151), Expect = 2e-78
 Identities = 202/219 (92%)
 Strand = Plus / Plus

                                                                        
Query: 1    ctacttcgggtgacaagtatagatgttgcaatggttgttcttaaagagaacttagtactc 60
            |||||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct: 1070 ctacttcgagtgaccagtatagatgttgcaatggttgttctgaaagaaaatttagtactc 1129

                                                                        
Query: 61   cctctgttcagagatgagtacatcttgcttcacgagaactatcaacattatgtccttcca 120
             | ||||||||||||||||||||||| || || |||||||||||||  ||||||||||||
Sbjct: 1130 tccctgttcagagatgagtacatcttactccatgagaactatcaactctatgtccttcca 1189

                                                                        
Query: 121  aaagttttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgat 180
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1190 aaagttttagaatcgaagagaatggctaaatctggacgtactaagcaaaaggaagctgat 1249

                                                   
Query: 181  atggaatacaatattgcaaagcaggttgagaagatgtta 219
             ||||||||||| ||||||||||||||||||| ||||||
Sbjct: 1250 ctggaatacaatgttgcaaagcaggttgagaaaatgtta 1288
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  204 bits (103), Expect = 8e-50
 Identities = 133/143 (93%)
 Strand = Plus / Minus

                                                                            
Query: 77       agtacatcttgcttcacgagaactatcaacattatgtccttccaaaagttttagaatcaa 136
                |||||||||| || || |||||||||||||  |||||||||||||||||||||||||| |
Sbjct: 27278439 agtacatcttactccatgagaactatcaactctatgtccttccaaaagttttagaatcga 27278380

                                                                            
Query: 137      agagaatggctaaatctggacgtactaaacaaaaggaagctgatatggaatacaatattg 196
                |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 27278379 agagaatggctaaatctggacgtactaagcaaaaggaagctgatctggaatacaatgttg 27278320

                                       
Query: 197      caaagcaggttgagaagatgtta 219
                |||||||||||||||| ||||||
Sbjct: 27278319 caaagcaggttgagaaaatgtta 27278297



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 1        ctacttcgggtgacaagtatagatgttgcaatggt 35
                |||||||| ||||| ||||||||||||||||||||
Sbjct: 27278862 ctacttcgagtgaccagtatagatgttgcaatggt 27278828



 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                              
Query: 33       ggttgttcttaaagagaacttagtactccctctgttcagagatgag 78
                ||||||||| ||||| || ||||||||| | |||||||||||||||
Sbjct: 27278563 ggttgttctgaaagaaaatttagtactctccctgttcagagatgag 27278518



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 49      aacttagtactccctctgtt 68
               ||||||||||||||||||||
Sbjct: 5353105 aacttagtactccctctgtt 5353124
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>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0623F08
          Length = 154540

 Score =  204 bits (103), Expect = 8e-50
 Identities = 133/143 (93%)
 Strand = Plus / Minus

                                                                          
Query: 77     agtacatcttgcttcacgagaactatcaacattatgtccttccaaaagttttagaatcaa 136
              |||||||||| || || |||||||||||||  |||||||||||||||||||||||||| |
Sbjct: 101642 agtacatcttactccatgagaactatcaactctatgtccttccaaaagttttagaatcga 101583

                                                                          
Query: 137    agagaatggctaaatctggacgtactaaacaaaaggaagctgatatggaatacaatattg 196
              |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct: 101582 agagaatggctaaatctggacgtactaagcaaaaggaagctgatctggaatacaatgttg 101523

                                     
Query: 197    caaagcaggttgagaagatgtta 219
              |||||||||||||||| ||||||
Sbjct: 101522 caaagcaggttgagaaaatgtta 101500



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                 
Query: 1      ctacttcgggtgacaagtatagatgttgcaatggt 35
              |||||||| ||||| ||||||||||||||||||||
Sbjct: 102065 ctacttcgagtgaccagtatagatgttgcaatggt 102031



 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                            
Query: 33     ggttgttcttaaagagaacttagtactccctctgttcagagatgag 78
              ||||||||| ||||| || ||||||||| | |||||||||||||||
Sbjct: 101766 ggttgttctgaaagaaaatttagtactctccctgttcagagatgag 101721
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>gb|AC147481.3| Medicago truncatula chromosome 2 BAC clone mth2-138b18, complete
             sequence
          Length = 128810

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                         
Query: 127   ttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgatatggaa 186
             |||||||| ||||  ||||| ||||||||||| || || ||||| ||||| |||||||||
Sbjct: 83351 ttagaatctaagaagatggcaaaatctggacggacaaagcaaaaagaagcagatatggaa 83410

                                       
Query: 187   tacaatattgcaaagcaggttgagaa 212
             || ||| |||||||||||||||||||
Sbjct: 83411 tataatgttgcaaagcaggttgagaa 83436
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>ref|NM_129064.3| Arabidopsis thaliana GRL/NAP1/NAPP; transcriptional activator
            AT2G35110 (GRL/NAP1/NAPP) transcript variant AT2G35110.1
            mRNA, complete cds
          Length = 4643

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 127  ttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgat 180
            |||||||||||||  |||||||| |||||||| |||||||||||||||||||||
Sbjct: 1332 ttagaatcaaagaagatggctaagtctggacggactaaacaaaaggaagctgat 1385
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>ref|NM_001036408.1| Arabidopsis thaliana GRL/NAP1/NAPP AT2G35110 (GRL/NAP1/NAPP)
            transcript variant AT2G35110.2 mRNA, complete cds
          Length = 4636

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 127  ttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgat 180
            |||||||||||||  |||||||| |||||||| |||||||||||||||||||||
Sbjct: 1325 ttagaatcaaagaagatggctaagtctggacggactaaacaaaaggaagctgat 1378
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>gb|AY787211.1| Arabidopsis thaliana NAP (NAP) mRNA, complete cds, alternatively
            spliced
          Length = 4275

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 127  ttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgat 180
            |||||||||||||  |||||||| |||||||| |||||||||||||||||||||
Sbjct: 1222 ttagaatcaaagaagatggctaagtctggacggactaaacaaaaggaagctgat 1275
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>gb|AY496700.1| Arabidopsis thaliana ARP2/3 regulatory protein subunit NAPP mRNA,
            complete cds
          Length = 4570

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 127  ttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgat 180
            |||||||||||||  |||||||| |||||||| |||||||||||||||||||||
Sbjct: 1325 ttagaatcaaagaagatggctaagtctggacggactaaacaaaaggaagctgat 1378
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>gb|AC004667.3| Arabidopsis thaliana chromosome 2 clone T4C15 map ve016, complete
             sequence
          Length = 91863

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                   
Query: 127   ttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgat 180
             |||||||||||||  |||||||| |||||||| |||||||||||||||||||||
Sbjct: 68653 ttagaatcaaagaagatggctaagtctggacggactaaacaaaaggaagctgat 68706
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>tpg|BK004072.1| TPA: TPA_exp: Arabidopsis thaliana NAPP (NAPP) gene, complete cds
          Length = 8133

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 127  ttagaatcaaagagaatggctaaatctggacgtactaaacaaaaggaagctgat 180
            |||||||||||||  |||||||| |||||||| |||||||||||||||||||||
Sbjct: 3030 ttagaatcaaagaagatggctaagtctggacggactaaacaaaaggaagctgat 3083
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>gb|AY596602.1| Saccharum officinarum clone SCCCLR1C07B03, complete sequence
          Length = 3299

 Score = 71.9 bits (36), Expect = 8e-10
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 148 aaatctggacgtactaaacaaaaggaagctgatatggaatacaatattgcaaagcaggtt 207
           |||||||| || ||||| || |||||||||||| |||| |||||| ||||||||||||||
Sbjct: 1   aaatctggccgaactaagcagaaggaagctgatctggagtacaatgttgcaaagcaggtt 60

               
Query: 208 gaga 211
           ||||
Sbjct: 61  gaga 64
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>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome
          Length = 2575032

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 183    ggaatacaatattgcaaagcagg 205
              |||||||||||||||||||||||
Sbjct: 122501 ggaatacaatattgcaaagcagg 122523
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>gb|AC154182.2| Mus musculus BAC clone RP23-471C19 from chromosome 16, complete sequence
          Length = 180782

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 26     ttgcaatggttgttcttaaag 46
              |||||||||||||||||||||
Sbjct: 115469 ttgcaatggttgttcttaaag 115449
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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     ttgcaatggttgttcttaaa 45
              ||||||||||||||||||||
Sbjct: 400234 ttgcaatggttgttcttaaa 400253
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>gb|AC009682.7| Homo sapiens chromosome 8, clone RP11-72O13, complete sequence
          Length = 155428

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     ttcttaaagagaacttagta 57
              ||||||||||||||||||||
Sbjct: 140510 ttcttaaagagaacttagta 140491
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>gb|AY100469.1| Oryza sativa (indica cultivar-group) putative soluble starch synthase
            III-2 gene, complete cds
          Length = 9586

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   aacttagtactccctctgtt 68
            ||||||||||||||||||||
Sbjct: 5753 aacttagtactccctctgtt 5772
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>gb|AC152977.1| Mus musculus 10 BAC RP23-251I19 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 192515

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   aaagagaatggctaaatctg 154
             ||||||||||||||||||||
Sbjct: 66625 aaagagaatggctaaatctg 66606
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>gb|AC103725.5| Homo sapiens chromosome 8, clone RP11-598A18, complete sequence
          Length = 172945

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ttcttaaagagaacttagta 57
              ||||||||||||||||||||
Sbjct: 139992 ttcttaaagagaacttagta 140011
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>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete
              sequence
          Length = 640681

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    aatattgcaaagcaggttgagaag 213
              ||||||||||||||| ||||||||
Sbjct: 394743 aatattgcaaagcagattgagaag 394766
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>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056O06
          Length = 151038

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    aacttagtactccctctgtt 68
             ||||||||||||||||||||
Sbjct: 22916 aacttagtactccctctgtt 22935
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>dbj|AP005857.3| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1585F1, complete
              sequence
          Length = 158971

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ttcttaaagagaacttagta 57
              ||||||||||||||||||||
Sbjct: 157281 ttcttaaagagaacttagta 157300
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>dbj|AP005790.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB232A8, complete
              sequence
          Length = 122921

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     ttcttaaagagaacttagta 57
              ||||||||||||||||||||
Sbjct: 112649 ttcttaaagagaacttagta 112668
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>dbj|AP004925.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT13P22, TM0079b,
            complete sequence
          Length = 33290

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 125  ttttagaatcaaagagaatg 144
            ||||||||||||||||||||
Sbjct: 3651 ttttagaatcaaagagaatg 3632
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>dbj|AP004475.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT01I13, TM0010,
             complete sequence
          Length = 87900

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 125   ttttagaatcaaagagaatg 144
             ||||||||||||||||||||
Sbjct: 40774 ttttagaatcaaagagaatg 40755
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>emb|AL627386.8| Mouse DNA sequence from clone RP23-278A10 on chromosome X, complete
             sequence
          Length = 93010

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 172   gaagctgatatggaatacaatatt 195
             |||||| |||||||||||||||||
Sbjct: 42880 gaagctaatatggaatacaatatt 42903


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,272,060
Number of Sequences: 3902068
Number of extensions: 2272060
Number of successful extensions: 168269
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 168052
Number of HSP's gapped (non-prelim): 217
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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