ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27f10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 90.9 bits (224), Expect = 7e-19 Identities = 43/53 (81%), Positives = 46/53 (86%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILG 289 M + G DRLTG+NKEAWKEG+IRGTAVLVK DVL LGDFHASLLDGVH ILG Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILG 53
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 57.8 bits (138), Expect = 7e-09 Identities = 28/54 (51%), Positives = 40/54 (74%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGK 292 MLL GL+D LTG NK A +++GT VL++ +VLDL DF A+++DG+ + LGK Sbjct: 1 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGK 50
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 50.4 bits (119), Expect = 1e-06 Identities = 22/53 (41%), Positives = 40/53 (75%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGK 292 +L G++D +TG +K++ +++GT VL++ +VLDL DF A+++DG+ + LGK Sbjct: 1 MLGGIIDTITGSSKQS----RLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGK 49
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 48.9 bits (115), Expect = 3e-06 Identities = 27/52 (51%), Positives = 34/52 (65%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILG 289 +L GL D+LTGKN KI+G AVL+ +LD DF ASLLD VH++ G Sbjct: 1 MLGGLKDKLTGKNGN-----KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFG 47
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 46.2 bits (108), Expect = 2e-05 Identities = 24/48 (50%), Positives = 32/48 (66%) Frame = +2 Query: 146 LVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILG 289 L D LTG E + K++GT VL+K +VLD DF+AS LD +H+ LG Sbjct: 5 LRDLLTGGGNETTTK-KVKGTVVLMKKNVLDFNDFNASFLDRLHEFLG 51
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/53 (33%), Positives = 35/53 (66%) Frame = +2 Query: 134 LLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGK 292 +L G++ LTG K +++G+ VL++ + LD+ DF A+++DG+ + LG+ Sbjct: 1 MLGGIIGGLTGN-----KNARLKGSLVLMRKNALDINDFGATVIDGISEFLGR 48
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 40.0 bits (92), Expect = 0.002 Identities = 20/54 (37%), Positives = 34/54 (62%) Frame = +2 Query: 131 MLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVHKILGK 292 M L G+VD + GK+ K++G +L+K +VLD + AS++DG+ +LG+ Sbjct: 1 MSLGGIVDAILGKDDRP----KVKGRVILMKKNVLDFINIGASVVDGISDLLGQ 50
>ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protein 210)| Length = 504 Score = 30.4 bits (67), Expect = 1.2 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP CAKC ++ + TH R + PC C +R ++ H Sbjct: 370 HKCPICAKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 416
>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN| domain-containing protein 19) Length = 518 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCI---SKGTGTHRLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP C KC S+ TG R+ S C C R R ++ H Sbjct: 323 HRCPQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRH 369
>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)| Length = 512 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCAKCISKGTG--TH-RLCSSCSALPCLRCRTREQRRGEMLLH 142 H CP C+KC ++ + TH R + PC C +R ++ H Sbjct: 378 HKCPICSKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 424
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 194 KIRGTAVLVKSDVLDLGDFHASLLDGVHKILGK 292 K++GT V++ +VLD D SL + +LG+ Sbjct: 18 KVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQ 50
>ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2)| Length = 482 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +2 Query: 17 CPPCAKCISKGTGTHRLCSSCSALPCLRCR 106 CP C CI K G C+ + C RCR Sbjct: 287 CPQCHSCIEKAGG-------CNHIQCTRCR 309
>UVRA_RHILO (Q98M36) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 973 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LG++RA+ Sbjct: 293 PFGACPTCDGLGSQRAI 309
>U520_DROME (Q9VUV9) Putative U5 small nuclear ribonucleoprotein 200 kDa| helicase (EC 3.6.1.-) Length = 2142 Score = 28.1 bits (61), Expect = 5.9 Identities = 21/63 (33%), Positives = 31/63 (49%) Frame = +2 Query: 98 RCRTREQRRGEMLLHGLVDRLTGKNKEAWKEGKIRGTAVLVKSDVLDLGDFHASLLDGVH 277 R R RE+ RG L ++ +L E +EG+ RG+ K D D G A + GV Sbjct: 348 RQRIREKMRGNSALAKILRQLDTGKSEDQEEGEARGSK-RGKGDAEDGGAAAAGQVAGVR 406 Query: 278 KIL 286 ++L Sbjct: 407 QLL 409
>UVRA_BRUSU (Q8G0I9) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUME (Q8YHC4) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUAB (P0C0Z2) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUA2 (Q2YPX5) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 5.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>PML_MOUSE (Q60953) Probable transcription factor PML| Length = 808 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%) Frame = +2 Query: 17 CPPC---AKCISKGTGTHRLCSSCSALPCLRC 103 CP C AKC H LCS C P L+C Sbjct: 31 CPSCQAQAKCPKLLPCLHTLCSGCLEAPGLQC 62
>MT2_CALSI (P55950) Metallothionein-2B (MT-2B) (Metallothionein-IIB) (MT-IIB)| [Contains: Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)] Length = 58 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCAKCISKGTGTHR-LCSSCSALPCLRC 103 CPPC KC S+ T + CS + PC C Sbjct: 28 CPPCDKCSSECKCTSKEECSKTCSKPCSCC 57
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCAKCISKGTG-THRLCSSCSALPCLRC 103 CP C CI K G H CS C C C Sbjct: 297 CPKCNICIEKNGGCNHMQCSKCKHDFCWMC 326
>SUHW_DROVI (Q08876) Protein suppressor of hairy wing| Length = 899 Score = 28.1 bits (61), Expect = 5.9 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Frame = +2 Query: 8 HHHCPPCAKCISKGTGTHRLCS-----SCSALPCLRCRTREQRRGEMLLHGLVDRLTGK 169 H +CP C K T R SC+ PC C + + + LH +L GK Sbjct: 287 HINCPDCPKSFKTQTSYERHIFITHSWSCNDYPCSICNAKLRSGALLKLHEQQHQLRGK 345
>SN1L2_MOUSE (Q8CFH6) Serine/threonine-protein kinase SNF1-like kinase 2 (EC| 2.7.11.1) (Salt-inducible kinase 2) Length = 931 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +1 Query: 7 PPPLPSLCQVHQQGDRHPP 63 PPPLPS Q HQQ PP Sbjct: 811 PPPLPSQLQQHQQPPPPPP 829
>ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| (UbcM4-interacting protein 48) Length = 492 Score = 28.1 bits (61), Expect = 5.9 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCAKCISKGTG-THRLCSSCSALPCLRC 103 CP C CI K G H CS C C C Sbjct: 296 CPKCNICIEKNGGCNHMQCSKCKHDFCWMC 325
>MT_ASTFL (P55951) Metallothionein (MT)| Length = 58 Score = 27.7 bits (60), Expect = 7.7 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +2 Query: 17 CPPCAKCISKGTGTHRLCSSCSALPCLRC 103 C +C + G T +C+SC PC +C Sbjct: 6 CNDVCECAAGGCKTGCVCTSCRCSPCDKC 34
>ZCHC4_XENTR (Q66IH9) Zinc finger CCHC domain-containing protein 4| Length = 487 Score = 27.7 bits (60), Expect = 7.7 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 12/77 (15%) Frame = +2 Query: 14 HCPPCAKCISKGTGTHRLCSSCS--ALP----------CLRCRTREQRRGEMLLHGLVDR 157 HC C KC+ K + TH CS+C+ ALP C C ++ +R H V Sbjct: 396 HCTQCNKCV-KPSWTH--CSACNHCALPDHPCGTAGRGCFLCGGKDHKR-RGCPHQSVS- 450 Query: 158 LTGKNKEAWKEGKIRGT 208 GK E K+ I+G+ Sbjct: 451 AHGKRMENLKQKNIKGS 467
>ZNF96_MOUSE (Q9Z1D7) Zinc finger protein 96 (Zfp-96)| Length = 501 Score = 27.7 bits (60), Expect = 7.7 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%) Frame = +2 Query: 8 HHHCPPCAKCISKGTGT-HRLCSSCSALP--CLRCRTREQRRGEMLLH 142 H+HC C K + G H L S P CL+C RR + H Sbjct: 352 HYHCNECGKAFCQKAGLFHHLKSHRRNRPYQCLQCNKSFNRRSTLSQH 399 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,065,922 Number of Sequences: 219361 Number of extensions: 563338 Number of successful extensions: 2788 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2652 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2781 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
