ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl27f10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds Length = 3003 Score = 561 bits (283), Expect = e-157 Identities = 295/299 (98%) Strand = Plus / Plus Query: 2 ccctaccaccaccactgccctccttgtgccaagtgcatcagcaaggggacaggcacccac 61 ||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||| Sbjct: 5 ccctaccaccaccactgccctccttgtgccaagtgaataagctaggggacaggcacccac 64 Query: 62 cggttgtgttcctcgtgctctgctctgccctgcctccgctgcagaaccagagagcagagg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 cggttgtgttcctcgtgctctgctctgccctgcctccgctgcagaaccagagagcagagg 124 Query: 122 agaggagagatgctgctgcacgggctggtggaccggctgacggggaagaacaaggaggcg 181 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 125 agaggagagatgctgctgcacgggctggtggaccggctaacggggaagaacaaggaggcg 184 Query: 182 tggaaggagggcaagatccggggcacggcggtgctggtcaagagcgacgtgctcgacctc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 tggaaggagggcaagatccggggcacggcggtgctggtcaagagcgacgtgctcgacctc 244 Query: 242 ggcgacttccacgcctccctcctcgacggcgtccacaagatcctcggcaaggacgacgg 300 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 ggcgacttccacgcctccctcctcgacggcgtccacaagatcctcggcaaggacgacgg 303
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3165 Score = 172 bits (87), Expect = 4e-40 Identities = 120/131 (91%) Strand = Plus / Plus Query: 159 tgacggggaagaacaaggaggcgtggaaggagggcaagatccggggcacggcggtgctgg 218 ||||||||| ||||||||||||||||||||| || | |||||| || ||||||||||||| Sbjct: 320 tgacggggaggaacaaggaggcgtggaaggaagggaggatccgtgggacggcggtgctgg 379 Query: 219 tcaagagcgacgtgctcgacctcggcgacttccacgcctccctcctcgacggcgtccaca 278 | |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 tgaagaaggacgtgctcggcctcggcgacttccacgcctccctcctcgacggcgtccaca 439 Query: 279 agatcctcggc 289 | ||||||||| Sbjct: 440 acatcctcggc 450
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 172 bits (87), Expect = 4e-40 Identities = 120/131 (91%) Strand = Plus / Plus Query: 159 tgacggggaagaacaaggaggcgtggaaggagggcaagatccggggcacggcggtgctgg 218 ||||||||| ||||||||||||||||||||| || | |||||| || ||||||||||||| Sbjct: 59992 tgacggggaggaacaaggaggcgtggaaggaagggaggatccgtgggacggcggtgctgg 60051 Query: 219 tcaagagcgacgtgctcgacctcggcgacttccacgcctccctcctcgacggcgtccaca 278 | |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 60052 tgaagaaggacgtgctcggcctcggcgacttccacgcctccctcctcgacggcgtccaca 60111 Query: 279 agatcctcggc 289 | ||||||||| Sbjct: 60112 acatcctcggc 60122
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 172 bits (87), Expect = 4e-40 Identities = 120/131 (91%) Strand = Plus / Plus Query: 159 tgacggggaagaacaaggaggcgtggaaggagggcaagatccggggcacggcggtgctgg 218 ||||||||| ||||||||||||||||||||| || | |||||| || ||||||||||||| Sbjct: 27815862 tgacggggaggaacaaggaggcgtggaaggaagggaggatccgtgggacggcggtgctgg 27815921 Query: 219 tcaagagcgacgtgctcgacctcggcgacttccacgcctccctcctcgacggcgtccaca 278 | |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 27815922 tgaagaaggacgtgctcggcctcggcgacttccacgcctccctcctcgacggcgtccaca 27815981 Query: 279 agatcctcggc 289 | ||||||||| Sbjct: 27815982 acatcctcggc 27815992
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 172 bits (87), Expect = 4e-40 Identities = 120/131 (91%) Strand = Plus / Plus Query: 159 tgacggggaagaacaaggaggcgtggaaggagggcaagatccggggcacggcggtgctgg 218 ||||||||| ||||||||||||||||||||| || | |||||| || ||||||||||||| Sbjct: 27907186 tgacggggaggaacaaggaggcgtggaaggaagggaggatccgtgggacggcggtgctgg 27907245 Query: 219 tcaagagcgacgtgctcgacctcggcgacttccacgcctccctcctcgacggcgtccaca 278 | |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 27907246 tgaagaaggacgtgctcggcctcggcgacttccacgcctccctcctcgacggcgtccaca 27907305 Query: 279 agatcctcggc 289 | ||||||||| Sbjct: 27907306 acatcctcggc 27907316
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence Length = 3167 Score = 172 bits (87), Expect = 4e-40 Identities = 120/131 (91%) Strand = Plus / Plus Query: 159 tgacggggaagaacaaggaggcgtggaaggagggcaagatccggggcacggcggtgctgg 218 ||||||||| ||||||||||||||||||||| || | |||||| || ||||||||||||| Sbjct: 321 tgacggggaggaacaaggaggcgtggaaggaagggaggatccgtgggacggcggtgctgg 380 Query: 219 tcaagagcgacgtgctcgacctcggcgacttccacgcctccctcctcgacggcgtccaca 278 | |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 tgaagaaggacgtgctcggcctcggcgacttccacgcctccctcctcgacggcgtccaca 440 Query: 279 agatcctcggc 289 | ||||||||| Sbjct: 441 acatcctcggc 451
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity lipoxygenase mRNA, complete cds Length = 3154 Score = 165 bits (83), Expect = 1e-37 Identities = 119/131 (90%) Strand = Plus / Plus Query: 159 tgacggggaagaacaaggaggcgtggaaggagggcaagatccggggcacggcggtgctgg 218 ||||||||| ||||||||||||||||||||| || | |||||| || ||||||||||||| Sbjct: 314 tgacggggaggaacaaggaggcgtggaaggaagggaggatccgtgggacggcggtgctgg 373 Query: 219 tcaagagcgacgtgctcgacctcggcgacttccacgcctccctcctcgacggcgtccaca 278 | |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 374 tgaagaaggacgtgctcggcctcggcgacttccacgcccccctcctcgacggcgtccaca 433 Query: 279 agatcctcggc 289 | ||||||||| Sbjct: 434 acatcctcggc 444
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence Length = 3135 Score = 163 bits (82), Expect = 4e-37 Identities = 133/150 (88%) Strand = Plus / Plus Query: 151 ggaccggctgacggggaagaacaaggaggcgtggaaggagggcaagatccggggcacggc 210 ||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| Sbjct: 255 ggaccggctgacgggaaagaacaaggaggcgtggagcgagggcaagatccgcggcacggt 314 Query: 211 ggtgctggtcaagagcgacgtgctcgacctcggcgacttccacgcctccctcctcgacgg 270 | ||||||||||| || ||||| ||| ||||||||||| ||||||| ||||||||||| Sbjct: 315 gaggctggtcaagaaggaggtgctggacgtcggcgacttcaacgcctcgctcctcgacgg 374 Query: 271 cgtccacaagatcctcggcaaggacgacgg 300 |||||||| |||||||||| ||||||||| Sbjct: 375 cgtccacaggatcctcggctgggacgacgg 404
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full insert sequence Length = 2851 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 159 tgacggggaagaacaaggaggcgtggaaggagggcaagatccggggcacggcg 211 ||||||||| ||||||||||||||||||||| || | |||||| || |||||| Sbjct: 53 tgacggggaggaacaaggaggcgtggaaggaagggaggatccgtgggacggcg 105
>gb|AY022740.1| Oryza sativa microsatellite MRG5065 containing (CCT)X8, closest to marker S2606, genomic sequence Length = 224 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 159 tgacggggaagaacaaggaggcgtggaagga 189 ||||||||| ||||||||||||||||||||| Sbjct: 47 tgacggggaggaacaaggaggcgtggaagga 17
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 109 cagagagcagaggagaggagaga 131 ||||||||||||||||||||||| Sbjct: 5088230 cagagagcagaggagaggagaga 5088252 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 40671984 gagagcagaggagaggagag 40671965
>dbj|AP002537.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0001B06 Length = 140304 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 109 cagagagcagaggagaggagaga 131 ||||||||||||||||||||||| Sbjct: 81668 cagagagcagaggagaggagaga 81690
>dbj|AP003417.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498B01 Length = 146812 Score = 46.1 bits (23), Expect = 0.064 Identities = 23/23 (100%) Strand = Plus / Plus Query: 109 cagagagcagaggagaggagaga 131 ||||||||||||||||||||||| Sbjct: 20261 cagagagcagaggagaggagaga 20283
>ref|NM_104053.3| Arabidopsis thaliana unknown protein AT1G51745 transcript variant AT1G51745.1 mRNA, complete cds Length = 2494 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagaga 131 |||||||||||||||||||||| Sbjct: 78 agagagcagaggagaggagaga 57
>ref|NM_001036095.1| Arabidopsis thaliana unknown protein AT1G51745 transcript variant AT1G51745.2 mRNA, complete cds Length = 2498 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagaga 131 |||||||||||||||||||||| Sbjct: 78 agagagcagaggagaggagaga 57
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence Length = 124511 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 110 agagagcagaggagaggagaga 131 |||||||||||||||||||||| Sbjct: 54127 agagagcagaggagaggagaga 54148
>gb|BT002989.1| Arabidopsis thaliana clone RAFL15-05-O22 (R20507) unknown protein (At1g51745) mRNA, complete cds Length = 2415 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagaga 131 |||||||||||||||||||||| Sbjct: 78 agagagcagaggagaggagaga 57
>gb|AC164164.3| Mus musculus BAC clone RP23-180E6 from chromosome 12, complete sequence Length = 245260 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 175296 agagagcagaggagaggagag 175276
>gb|AC118250.12| Mus musculus chromosome 15, clone RP23-412A24, complete sequence Length = 166986 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 99880 agagagcagaggagaggagag 99900
>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence Length = 164920 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tgctctgctctgccctgcctc 97 ||||||||||||||||||||| Sbjct: 144131 tgctctgctctgccctgcctc 144151
>gb|AC107671.7| Mus musculus chromosome 7, clone RP23-112C18, complete sequence Length = 202894 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 65190 agagagcagaggagaggagag 65170
>gb|AC140249.2| Mus musculus BAC clone RP24-285O1 from chromosome 12, complete sequence Length = 160337 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 159843 agagagcagaggagaggagag 159863
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 caagagcgacgtgctcgacct 240 ||||||||||||||||||||| Sbjct: 2634098 caagagcgacgtgctcgacct 2634078
>gb|AC111087.9| Mus musculus chromosome 9, clone RP23-152O16, complete sequence Length = 231508 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 10128 agagagcagaggagaggagag 10148
>emb|AL662885.7| Human DNA sequence from clone RP13-208E17 on chromosome X Contains the ZCCHC5 gene for zinc finger CCHC domain containing 5, complete sequence Length = 154060 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagaga 131 ||||||||||||||||||||| Sbjct: 127748 gagagcagaggagaggagaga 127768
>emb|AL589765.19| Human DNA sequence from clone RP11-98D18 on chromosome 1 Contains the 3' end of the SNX27 gene for sorting nexin family member 27, the TNRC4 gene for trinucleotide repeat containing 4, five novel genes, a ribosomal protein S11 (RPS11) pseudogene, the MRPL9 gene for mitochondrial ribosomal protein L9, the OAZ3 gene for ornithine decarboxylase antizyme 3, a novel gene (FLJ36032) the TDRKH gene for tudor and KH domain containing, the RORC gene for RAR-related orphan receptor C and four CpG islands, complete sequence Length = 163389 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 agaggagaggagagatgctgc 137 ||||||||||||||||||||| Sbjct: 154880 agaggagaggagagatgctgc 154900
>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29 Length = 321250 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Plus Query: 136 gctgcacgggctggtggaccggctg 160 |||||||||| |||||||||||||| Sbjct: 266411 gctgcacggggtggtggaccggctg 266435
>gb|AC125624.6| Homo sapiens 3 BAC RP11-42O1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177929 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 109619 agagagcagaggagaggagag 109599
>emb|BX088705.18| Zebrafish DNA sequence from clone DKEY-21G19, complete sequence Length = 204103 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 gcagaggagaggagagatgct 135 ||||||||||||||||||||| Sbjct: 111890 gcagaggagaggagagatgct 111910
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Plus Query: 270 gcgtccacaagatcctcggcaagga 294 ||||| ||||||||||||||||||| Sbjct: 2948369 gcgtcgacaagatcctcggcaagga 2948393
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagaga 131 ||||||||||||||||||||| Sbjct: 26099550 gagagcagaggagaggagaga 26099570 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cagagagcagaggagaggag 128 |||||||||||||||||||| Sbjct: 23942028 cagagagcagaggagaggag 23942009
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 7534206 agagagcagaggagaggagag 7534186 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 agagagcagaggagaggagagatg 133 |||||| ||||||||||||||||| Sbjct: 2807225 agagaggagaggagaggagagatg 2807248
>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02 Length = 151636 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagaga 131 ||||||||||||||||||||| Sbjct: 78795 gagagcagaggagaggagaga 78815
>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1705_E12 Length = 191416 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 127912 agagagcagaggagaggagag 127892
>emb|AL121850.1|SCC78 Streptomyces coelicolor cosmid C78 (contained entirely in cosmid St3H12 therefore duplicated) Length = 3875 Score = 42.1 bits (21), Expect = 1.00 Identities = 24/25 (96%) Strand = Plus / Plus Query: 136 gctgcacgggctggtggaccggctg 160 |||||||||| |||||||||||||| Sbjct: 1479 gctgcacggggtggtggaccggctg 1503
>gb|AC154611.2| Mus musculus BAC clone RP23-335I9 from 13, complete sequence Length = 182452 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 81226 agagagcagaggagaggagag 81206
>dbj|AK073750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070L21, full insert sequence Length = 1295 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagaga 131 ||||||||||||||||||||| Sbjct: 609 gagagcagaggagaggagaga 589
>gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, complete sequence Length = 210109 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 178660 agagagcagaggagaggagag 178680
>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones DS02190 and DS00906, complete sequence Length = 163403 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tgctctgctctgccctgcctc 97 ||||||||||||||||||||| Sbjct: 122314 tgctctgctctgccctgcctc 122334
>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete sequence Length = 314957 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 tgctctgctctgccctgcctc 97 ||||||||||||||||||||| Sbjct: 78385 tgctctgctctgccctgcctc 78365
>gb|AC102364.5| Mus musculus chromosome 9, clone RP23-106P6, complete sequence Length = 208404 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagaga 131 ||||||||||||||||||||| Sbjct: 104127 gagagcagaggagaggagaga 104147
>gb|AC159824.2| Mus musculus BAC clone RP23-122E19 from chromosome 9, complete sequence Length = 225745 Score = 42.1 bits (21), Expect = 1.00 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagag 130 ||||||||||||||||||||| Sbjct: 73369 agagagcagaggagaggagag 73349
>gb|AC107774.8| Mus musculus chromosome 5, clone RP23-99A9, complete sequence Length = 227044 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 128654 gagagcagaggagaggagag 128635
>gb|AC131780.5| Mus musculus BAC clone RP24-340I7 from chromosome 9, complete sequence Length = 176274 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggagaggagagatgctgctg 139 |||||||||||||||||||| Sbjct: 61199 ggagaggagagatgctgctg 61180
>ref|NM_032242.2| Homo sapiens plexin A1 (PLXNA1), mRNA Length = 9040 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 7903 gtgctctgctctgccctgcc 7922
>gb|AC161510.10| Mus musculus chromosome 5, clone RP23-7M16, complete sequence Length = 195579 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 18215 gagagcagaggagaggagag 18196
>gb|AC138595.10| Mus musculus chromosome 1, clone RP24-286D13, complete sequence Length = 172490 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggcggtgctggtcaagagcg 227 |||||||||||||||||||| Sbjct: 25871 ggcggtgctggtcaagagcg 25890
>gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, complete sequence Length = 159813 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 128910 gagagcagaggagaggagag 128929
>ref|XM_422445.1| PREDICTED: Gallus gallus similar to chromosome 9 open reading frame 150; similar to DNA segment, Chr 4, Brigham & Womens Genetics 0951 expressed (LOC424608), mRNA Length = 2528 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 ctcgtgctctgctctgccct 92 |||||||||||||||||||| Sbjct: 1221 ctcgtgctctgctctgccct 1202
>ref|XM_416482.1| PREDICTED: Gallus gallus similar to Microfibrillar associated protein 5 (LOC418256), mRNA Length = 1840 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 agagcagaggagaggagaga 131 |||||||||||||||||||| Sbjct: 1708 agagcagaggagaggagaga 1689
>gb|AC120397.7| Mus musculus chromosome 18, clone RP24-332E21, complete sequence Length = 178502 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 12142 gagagcagaggagaggagag 12123
>gb|BC032432.1| Homo sapiens plexin A1, mRNA (cDNA clone IMAGE:4517879), complete cds Length = 1383 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 154 gtgctctgctctgccctgcc 173
>gb|BC042904.1| Homo sapiens plexin A1, mRNA (cDNA clone IMAGE:5258253), partial cds Length = 2497 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 1360 gtgctctgctctgccctgcc 1379
>ref|XM_956988.1| Neurospora crassa OR74A hypothetical protein (NCU07948.1) partial mRNA Length = 732 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 acggcggtgctggtcaagag 225 |||||||||||||||||||| Sbjct: 53 acggcggtgctggtcaagag 34
>gb|AC119952.12| Mus musculus chromosome 14, clone RP24-448F1, complete sequence Length = 181695 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 91904 gagagcagaggagaggagag 91923
>gb|AC129040.5| Rattus norvegicus 6 BAC CH230-372A13 (Children's Hospital Oakland Research Institute) complete sequence Length = 176067 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 175096 gagagcagaggagaggagag 175115
>ref|XM_328653.1| Neurospora crassa OR74A hypothetical protein (NCU07948.1) partial mRNA Length = 732 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 acggcggtgctggtcaagag 225 |||||||||||||||||||| Sbjct: 53 acggcggtgctggtcaagag 34
>gb|AC145859.4| Pan troglodytes BAC clone RP43-6G18 from 7, complete sequence Length = 164503 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 103361 gagagcagaggagaggagag 103380 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 103346 gagagcagaggagaggagag 103365 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 103321 gagagcagaggagaggagag 103340
>gb|AC147312.3| Pan troglodytes BAC clone RP43-50K12 from 7, complete sequence Length = 214157 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aggagaggagagatgctgct 138 |||||||||||||||||||| Sbjct: 55497 aggagaggagagatgctgct 55516
>gb|AC134560.5| Mus musculus BAC clone RP24-100B13 from chromosome 16, complete sequence Length = 175179 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 cctaccaccaccactgccct 22 |||||||||||||||||||| Sbjct: 57953 cctaccaccaccactgccct 57972
>gb|AC109501.21| Mus musculus chromosome 17, clone RP23-449E17, complete sequence Length = 187144 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 155880 gagagcagaggagaggagag 155861
>gb|AC162527.5| Mus musculus BAC clone RP23-30M17 from chromosome 14, complete sequence Length = 200348 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 138456 gagagcagaggagaggagag 138475
>gb|AC159271.4| Mus musculus BAC clone RP23-409N21 from chromosome 12, complete sequence Length = 202949 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 agagagcagaggagaggaga 129 |||||||||||||||||||| Sbjct: 31464 agagagcagaggagaggaga 31445
>gb|AC138791.3| Mus musculus BAC clone RP23-222G6 from chromosome 7, complete sequence Length = 203288 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 62187 gagagcagaggagaggagag 62206
>gb|AC123985.10| Mus musculus chromosome 14, clone RP23-154G18, complete sequence Length = 229313 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 153665 gagagcagaggagaggagag 153646
>gb|AC139350.3| Mus musculus BAC clone RP24-254D18 from chromosome 15, complete sequence Length = 161300 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagagatgc 134 ||||| |||||||||||||||||| Sbjct: 81603 gagaggagaggagaggagagatgc 81580
>gb|AC009159.12| Homo sapiens chromosome 16 clone RP11-70D24, complete sequence Length = 165921 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 ccagagagcagaggagagga 127 |||||||||||||||||||| Sbjct: 108717 ccagagagcagaggagagga 108736
>gb|AC123935.4| Mus musculus BAC clone RP23-354J3 from chromosome 13, complete sequence Length = 219370 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 167116 gagagcagaggagaggagag 167097
>gb|AC125049.3| Mus musculus BAC clone RP23-367C15 from chromosome 9, complete sequence Length = 211511 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 155846 gagagcagaggagaggagag 155865
>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence Length = 250147 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 agagagcagaggagaggagagatg 133 |||||| ||||||||||||||||| Sbjct: 212463 agagaggagaggagaggagagatg 212486
>gb|AC115721.11| Mus musculus chromosome 3, clone RP23-9P8, complete sequence Length = 218746 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 184059 gagagcagaggagaggagag 184078
>gb|AC073272.7| Homo sapiens BAC clone RP11-590O19 from 7, complete sequence Length = 54594 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 34038 gagagcagaggagaggagag 34019 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 33993 gagagcagaggagaggagag 33974
>gb|AC006148.3| Homo sapiens PAC clone RP5-902E20 from 7, complete sequence Length = 121110 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 aggagaggagagatgctgct 138 |||||||||||||||||||| Sbjct: 37468 aggagaggagagatgctgct 37449
>gb|AC108838.20| Mus musculus chromosome 18, clone RP23-326N14, complete sequence Length = 173862 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 138429 gagagcagaggagaggagag 138410
>gb|AC160549.5| Mus musculus chromosome 3, clone RP23-276K18, complete sequence Length = 157222 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 80409 gagagcagaggagaggagag 80428
>gb|AC102116.8| Mus musculus chromosome 3, clone RP23-149A10, complete sequence Length = 204383 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 87174 gagagcagaggagaggagag 87193
>gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence Length = 226331 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 196128 gagagcagaggagaggagag 196109
>emb|AL162291.14| Human DNA sequence from clone RP11-402F1 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 98399 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 58086 gagagcagaggagaggagag 58067 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 58051 gagagcagaggagaggagag 58032
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 tcgacctcggcgacttccac 253 |||||||||||||||||||| Sbjct: 3027863 tcgacctcggcgacttccac 3027882
>emb|AL121772.19|HSJ965G21 Human DNA sequence from clone RP5-965G21 on chromosome 20 Contains the PYGB gene encoding the brain form of glycogen phosphorylase, the 3' end of the C20orf22 gene for chromosome 20 open reading frame 22 and a CpG island, complete sequence Length = 75499 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cagagagcagaggagaggag 128 |||||||||||||||||||| Sbjct: 55785 cagagagcagaggagaggag 55766
>gb|AC163388.5| Mus musculus chromosome 1, clone RP24-74P5, complete sequence Length = 208139 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 81064 gagagcagaggagaggagag 81083 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 81014 gagagcagaggagaggagag 81033 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 80989 gagagcagaggagaggagag 81008 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 80974 gagagcagaggagaggagag 80993 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 80904 gagagcagaggagaggagag 80923 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 80859 gagagcagaggagaggagag 80878
>emb|AL022310.1|HS395P12 Human DNA sequence from clone RP3-395P12 on chromosome 1q24-25 Contains a glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)(GOT2) pseudogene, a novel gene and the TNFSF4 gene for tumor necrosis factor (ligand) superfamily, member 4 (tax-transcriptionally activated glycoprotein 1, 34kDa), complete sequence Length = 147724 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 132912 gagagcagaggagaggagag 132931
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 gatgctgctgcacgggctgg 149 |||||||||||||||||||| Sbjct: 4959331 gatgctgctgcacgggctgg 4959312
>gb|AC164159.2| Mus musculus BAC clone RP23-339C17 from chromosome 17, complete sequence Length = 206481 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 87101 gagagcagaggagaggagag 87082
>emb|BX927386.11| Zebrafish DNA sequence from clone CH211-54F10 in linkage group 1, complete sequence Length = 80968 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 cgctgcagaaccagagagca 117 |||||||||||||||||||| Sbjct: 50219 cgctgcagaaccagagagca 50200
>emb|AL645606.22| Mouse DNA sequence from clone RP23-374K2 on chromosome 1, complete sequence Length = 193458 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 189408 gagagcagaggagaggagag 189389
>emb|AL928857.15| Mouse DNA sequence from clone RP24-499A8 on chromosome 11 Contains the 5' end of the Gemin5 gene for gem (nuclear organelle) associated protein 5, a novel gene, a interferon gamma inducible protein (Ifi47) pseudogene, the Igtp gene for interferon gamma induced GTPase, the Gtpi-pending gene for interferon-g induced GTPase, a novel gene and one CpG island, complete sequence Length = 133633 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 103989 gagagcagaggagaggagag 103970
>emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in linkage group 6, complete sequence Length = 219514 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 106906 gagagcagaggagaggagag 106925
>gb|AC115085.4| Homo sapiens chromosome 17, clone RP11-280F10, complete sequence Length = 163229 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 58908 gagagcagaggagaggagag 58889
>gb|AC092125.2| Homo sapiens chromosome 16 clone RP11-109D24, complete sequence Length = 173905 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 117870 gagagcagaggagaggagag 117889
>gb|AC023742.4| Drosophila melanogaster X BAC RP98-43C24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 172203 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aagaacaaggaggcgtggaa 186 |||||||||||||||||||| Sbjct: 78257 aagaacaaggaggcgtggaa 78238
>emb|AL136663.1|HSM800089 Homo sapiens mRNA; cDNA DKFZp564A176 (from clone DKFZp564A176) Length = 1424 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 314 gtgctctgctctgccctgcc 333
>dbj|AK128612.1| Homo sapiens cDNA FLJ46771 fis, clone TRACH3025828, highly similar to Mus musculus plexin A1 (Plxna1) Length = 4196 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 3105 gtgctctgctctgccctgcc 3124
>dbj|AK127254.1| Homo sapiens cDNA FLJ45321 fis, clone BRHIP3006279 Length = 4231 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 3140 gtgctctgctctgccctgcc 3159
>dbj|AK054675.1| Homo sapiens cDNA FLJ30113 fis, clone BNGH42000474 Length = 2187 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 1096 gtgctctgctctgccctgcc 1115
>gb|AF344660.1| Engraulis japonicus clone EJ27.2 microsatellite sequence Length = 465 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 430 gagagcagaggagaggagag 449
>gb|AF344657.1| Engraulis japonicus clone EJ27.1 microsatellite sequence Length = 466 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 431 gagagcagaggagaggagag 450
>gb|AF312994.1|AF312994 Mus musculus chromosome 1 clone MML, complete sequence Length = 228283 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 ggcggtgctggtcaagagcg 227 |||||||||||||||||||| Sbjct: 114259 ggcggtgctggtcaagagcg 114278
>gb|AC166644.7| Mus musculus chromosome 1, clone RP23-375C6, complete sequence Length = 175851 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 12878 gagagcagaggagaggagag 12859
>gb|AC102621.12| Mus musculus chromosome 1, clone RP23-429G8, complete sequence Length = 175286 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 131351 gagagcagaggagaggagag 131370 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 131301 gagagcagaggagaggagag 131320 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 131276 gagagcagaggagaggagag 131295 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 131261 gagagcagaggagaggagag 131280 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 131191 gagagcagaggagaggagag 131210 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 131146 gagagcagaggagaggagag 131165
>gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosome 10, complete sequence Length = 224442 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 38201 gagagcagaggagaggagag 38182
>gb|AC092371.3| Homo sapiens chromosome 16 clone RP11-525J10, complete sequence Length = 171100 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 19406 gagagcagaggagaggagag 19425
>gb|AC011199.22| Homo sapiens chromosome 3 clone RP11-61K12, complete sequence Length = 152135 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 22923 gtgctctgctctgccctgcc 22904
>gb|AC002308.1| Homo sapiens Chromosome 22q11.2 BAC Clone 1000e4 In IGLC Region, complete sequence Length = 151111 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 149826 gagagcagaggagaggagag 149807
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 3.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 241 cggcgacttccacgcctccctcctcgacggcg 272 ||||||| ||||||| ||||||||||||||| Sbjct: 73322 cggcgaccaccacgccaccctcctcgacggcg 73291
>gb|AC021887.4|AC021887 Homo sapiens BAC clone RP11-777M17 from 12, complete sequence Length = 194497 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 18080 gagagcagaggagaggagag 18061
>gb|AC102391.12| Mus musculus chromosome 18, clone RP24-62K22, complete sequence Length = 196455 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 61753 gagagcagaggagaggagag 61734 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 61733 gagagcagaggagaggagag 61714
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagagatgc 134 ||||| |||||||||||||||||| Sbjct: 26471526 gagaggagaggagaggagagatgc 26471549
>emb|BX572626.6| Mouse DNA sequence from clone RP24-408L19 on chromosome X, complete sequence Length = 155849 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 143068 gagagcagaggagaggagag 143087
>gb|AC106867.4| Homo sapiens BAC clone RP11-162F1 from 4, complete sequence Length = 109527 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 3110 gagagcagaggagaggagag 3129
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence Length = 203106 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 167724 gagagcagaggagaggagag 167705
>gb|AC092136.3| Homo sapiens chromosome 16 clone RP11-299F9, complete sequence Length = 173548 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 5447 gagagcagaggagaggagag 5466
>gb|AC133084.4| Mus musculus BAC clone RP24-358F13 from chromosome 5, complete sequence Length = 177485 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggagaggagagatgctgctg 139 |||||||||||||||||||| Sbjct: 135214 ggagaggagagatgctgctg 135195
>gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome 10, complete sequence Length = 164420 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 115720 gagagcagaggagaggagag 115701
>gb|AC130566.7| Homo sapiens 3 BAC RP11-61K12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 91240 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 gtgctctgctctgccctgcc 95 |||||||||||||||||||| Sbjct: 67978 gtgctctgctctgccctgcc 67997
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 113962 gagagcagaggagaggagag 113943
>gb|AC016182.24| Homo sapiens chromosome 17, clone RP11-559N14, complete sequence Length = 181971 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aggaggcgtggaaggagggc 193 |||||||||||||||||||| Sbjct: 179649 aggaggcgtggaaggagggc 179630
>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187215 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 90163 gagagcagaggagaggagag 90144
>gb|AC115857.16| Mus musculus chromosome 5, clone RP24-280I13, complete sequence Length = 163661 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 75774 gagagcagaggagaggagag 75793
>gb|AC144772.2| Mus musculus BAC clone RP24-173G12 from chromosome 15, complete sequence Length = 160630 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 44069 gagagcagaggagaggagag 44088
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 gctgcacgggctggtggaccggct 159 |||| ||||||||||||||||||| Sbjct: 5757544 gctggacgggctggtggaccggct 5757567
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 cagagagcagaggagaggag 128 |||||||||||||||||||| Sbjct: 71639 cagagagcagaggagaggag 71620
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 agagagcagaggagaggagagatg 133 |||||| ||||||||||||||||| Sbjct: 75453 agagaggagaggagaggagagatg 75476
>emb|AL929449.14| Mouse DNA sequence from clone RP23-279D23 on chromosome 2, complete sequence Length = 146396 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 36260 gagagcagaggagaggagag 36279
>dbj|AK121424.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134D10, full insert sequence Length = 1817 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagagatg 133 |||||| ||||||||||||||||| Sbjct: 410 agagaggagaggagaggagagatg 387
>dbj|AK119567.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-A06, full insert sequence Length = 2871 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagagatgc 134 ||||| |||||||||||||||||| Sbjct: 28 gagaggagaggagaggagagatgc 5
>dbj|AK068802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159J12, full insert sequence Length = 2144 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 48 gagagcagaggagaggagag 29
>dbj|AK067206.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095D10, full insert sequence Length = 1479 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagagatg 133 |||||| ||||||||||||||||| Sbjct: 149 agagaggagaggagaggagagatg 126
>dbj|AK066151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056H03, full insert sequence Length = 2872 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagagatgc 134 ||||| |||||||||||||||||| Sbjct: 29 gagaggagaggagaggagagatgc 6
>dbj|AK064982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C12, full insert sequence Length = 1762 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 agagagcagaggagaggagagatg 133 |||||| ||||||||||||||||| Sbjct: 356 agagaggagaggagaggagagatg 333
>gb|AC131731.4| Mus musculus BAC clone RP23-117K10 from 3, complete sequence Length = 200232 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 178300 gagagcagaggagaggagag 178319
>gb|AC134599.4| Mus musculus BAC clone RP23-192O14 from 12, complete sequence Length = 208842 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 agagagcagaggagaggaga 129 |||||||||||||||||||| Sbjct: 47558 agagagcagaggagaggaga 47577
>emb|CT571251.8| Mouse DNA sequence from clone RP23-169N10 on chromosome 14, complete sequence Length = 58749 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 6695 gagagcagaggagaggagag 6676
>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete sequence Length = 310993 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 aagaacaaggaggcgtggaa 186 |||||||||||||||||||| Sbjct: 35325 aagaacaaggaggcgtggaa 35306
>gb|AC118214.13| Mus musculus chromosome 5, clone RP24-334D6, complete sequence Length = 204792 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 ggagaggagagatgctgctg 139 |||||||||||||||||||| Sbjct: 9898 ggagaggagagatgctgctg 9879
>gb|AC130720.3| Mus musculus BAC clone RP24-292B4 from chromosome 1, complete sequence Length = 176143 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 agagcagaggagaggagaga 131 |||||||||||||||||||| Sbjct: 57562 agagcagaggagaggagaga 57581
>gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, complete sequence Length = 210643 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 179481 gagagcagaggagaggagag 179462 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 179461 gagagcagaggagaggagag 179442
>dbj|AP002782.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-660M18, complete sequences Length = 153078 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 438 gagagcagaggagaggagag 419
>dbj|AP000651.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-88K4, complete sequences Length = 74994 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 72726 gagagcagaggagaggagag 72707
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagagatgc 134 ||||| |||||||||||||||||| Sbjct: 26399695 gagaggagaggagaggagagatgc 26399718
>gb|AC164567.5| Mus musculus BAC clone RP23-64B8 from chromosome 10, complete sequence Length = 262262 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 agaggagaggagagatgctg 136 |||||||||||||||||||| Sbjct: 178523 agaggagaggagagatgctg 178504
>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146366 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagagatgc 134 ||||| |||||||||||||||||| Sbjct: 70550 gagaggagaggagaggagagatgc 70527
>gb|AC132593.3| Mus musculus BAC clone RP24-218L22 from 3, complete sequence Length = 175976 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 94693 gagagcagaggagaggagag 94674
>gb|AC137515.3| Mus musculus BAC clone RP23-258C20 from 1, complete sequence Length = 215582 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 9063 gagagcagaggagaggagag 9044
>emb|CR974485.12| Mouse DNA sequence from clone RP23-112H14 on chromosome 12, complete sequence Length = 219570 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 135976 gagagcagaggagaggagag 135957
>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22 Length = 909203 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 716827 gagagcagaggagaggagag 716808
>emb|AL844145.9| Mouse DNA sequence from clone RP23-403F4 on chromosome 2, complete sequence Length = 173053 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 6123 gagagcagaggagaggagag 6142
>gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome 1, complete sequence Length = 195784 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 agagcagaggagaggagaga 131 |||||||||||||||||||| Sbjct: 91314 agagcagaggagaggagaga 91333
>emb|AL844169.6| Mouse DNA sequence from clone RP23-322K15 on chromosome 4, complete sequence Length = 123433 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tgctctgctctgccctgcct 96 |||||||||||||||||||| Sbjct: 32677 tgctctgctctgccctgcct 32696
>emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chromosome 2, complete sequence Length = 206168 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 161580 gagagcagaggagaggagag 161599
>emb|AL672070.12| Mouse DNA sequence from clone RP23-115A1 on chromosome 9, complete sequence Length = 197912 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 167354 gagagcagaggagaggagag 167335
>emb|AL606982.21| Mouse DNA sequence from clone RP23-354C15 on chromosome 4, complete sequence Length = 209339 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 177228 gagagcagaggagaggagag 177247
>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete sequence Length = 194554 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gagcagaggagaggagagat 132 |||||||||||||||||||| Sbjct: 115936 gagcagaggagaggagagat 115955
>dbj|D87015.2| Homo sapiens immunoglobulin lambda gene locus DNA, clone:68D6 Length = 36240 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gagagcagaggagaggagag 130 |||||||||||||||||||| Sbjct: 20202 gagagcagaggagaggagag 20183 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,016,360 Number of Sequences: 3902068 Number of extensions: 3016360 Number of successful extensions: 173789 Number of sequences better than 10.0: 154 Number of HSP's better than 10.0 without gapping: 157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 171736 Number of HSP's gapped (non-prelim): 1948 length of query: 300 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 278 effective length of database: 17,147,199,772 effective search space: 4766921536616 effective search space used: 4766921536616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
