>OTX1_RAT (Q63410) Homeobox protein OTX1|
          Length = 355

 Score = 35.0 bits (79), Expect = 0.046
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 191 TNPATSFTLTSSPQAAATGQXXXXXXXXXPEKNQVESPFSLSSPTIFSFWKPCSSSLG 18
           T PA S + +SS  A++               N V +  SLS+PT  S W P S S G
Sbjct: 128 TPPAVSSSASSSSSASSASANPAAAAAAGLGGNPVAAASSLSTPTASSIWSPASISPG 185

>OTX1_MOUSE (P80205) Homeobox protein OTX1|
          Length = 355

 Score = 35.0 bits (79), Expect = 0.046
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 191 TNPATSFTLTSSPQAAATGQXXXXXXXXXPEKNQVESPFSLSSPTIFSFWKPCSSSLG 18
           T PA S + +SS  A++               N V +  SLS+PT  S W P S S G
Sbjct: 128 TPPAVSSSASSSSSASSASANPAAAAAAGLGGNPVAAASSLSTPTASSIWSPASISPG 185

>OTX1_HUMAN (P32242) Homeobox protein OTX1|
          Length = 354

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 191 TNPATSFTLTSSPQAAATGQXXXXXXXXXPEKNQVESPFSLSSPTIFSFWKPCSSSLG 18
           T PA S + +SS  A+++              N V +  SLS+P   S W P S S G
Sbjct: 128 TPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPASISPG 185

>TRPE_CLOTM (P14953) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 494

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 4   RKRGRPREEEQGFQKEKIVGDERE 75
           RKRGR +EE++  +KE ++ DE+E
Sbjct: 313 RKRGRTKEEDEALEKE-LLSDEKE 335

>YCHH_ECOLI (P0AB49) Hypothetical protein ychH|
          Length = 92

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 219 GSFGWLGGAKCNGHTECCSVNWRGRGWWL 305
           G+  WL GA+  GH + C      R WW+
Sbjct: 53  GAILWLAGARVGGHEQVCD-----RYWWV 76

>YCHH_ECOL6 (P0AB50) Hypothetical protein ychH|
          Length = 92

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 219 GSFGWLGGAKCNGHTECCSVNWRGRGWWL 305
           G+  WL GA+  GH + C      R WW+
Sbjct: 53  GAILWLAGARVGGHEQVCD-----RYWWV 76

>YCHH_ECO57 (P0AB51) Hypothetical protein ychH|
          Length = 92

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 219 GSFGWLGGAKCNGHTECCSVNWRGRGWWL 305
           G+  WL GA+  GH + C      R WW+
Sbjct: 53  GAILWLAGARVGGHEQVCD-----RYWWV 76

>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel|
           [Contains: Glutamic acid-rich protein (GARP);
           Cyclic-nucleotide-gated cation channel 4 (CNG channel 4)
           (CNG-4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)]
          Length = 1394

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 1   KRKRGRPREEEQGFQKEKIVGDEREK 78
           K + GR +EEE+G +KE   G E+E+
Sbjct: 401 KEEEGREKEEEEGGEKEDEEGREKEE 426



 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 1   KRKRGRPREEEQGFQKEKIVGDEREK 78
           + + GR +EEE+G +KE+  G E+E+
Sbjct: 370 EEEEGREKEEEEGEEKEEEEGREKEE 395

>VG47_ICHV1 (Q00139) 56 kDa serine protease (EC 3.4.21.-)|
          Length = 518

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 282 WRGRGWWLD 308
           WRGRGWWL+
Sbjct: 378 WRGRGWWLN 386


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,639,473
Number of Sequences: 219361
Number of extensions: 437230
Number of successful extensions: 1610
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)