ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27f04 |
|---|---|
| Clone Library Name | barley_pub |
>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)| Length = 780 Score = 31.6 bits (70), Expect = 1.0 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +2 Query: 89 GPAAGCRT*STP---SSALFLHGPAAGSRPSATPISHRAPSQLLRGPKHRSNPCSR 247 GP G S P S+ G AAG+ P P+SH +P ++G H NP S+ Sbjct: 550 GPGPGAELYSAPIFASNHSTRSGTAAGAGPPPHPVSHPSPGHNVQGSPH--NPSSQ 603
>JIP2_HUMAN (Q13387) C-jun-amino-terminal kinase-interacting protein 2| (JNK-interacting protein 2) (JIP-2) (JNK MAP kinase scaffold protein 2) (Islet-brain-2) (IB-2) (Mitogen-activated protein kinase 8-interacting protein 2) Length = 824 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = +2 Query: 92 PAAGCRT*STPSSALFLHGPAAGSRPSATPISHRAPSQLLRGPKHRSNPCSRHEDQEEDS 271 PAA + P LFL P +R + TP+ AP + R + S CS ED+E+D Sbjct: 422 PAAPRPGPAQPGPCLFLSNP---TRDTITPL-WAAPGRAARPGRACSAACSEEEDEEDDE 477 Query: 272 Q 274 + Sbjct: 478 E 478
>DLGP3_HUMAN (O95886) Disks large-associated protein 3 (DAP-3)| (SAP90/PSD-95-associated protein 3) (SAPAP3) (PSD-95/SAP90-binding protein 3) Length = 979 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = +2 Query: 50 GP*RSCRSARAFDGPAAGCRT 112 GP R C SA DGPA G RT Sbjct: 574 GPARRCSSADGLDGPAMGART 594
>VIT_ICHUN (Q91062) Vitellogenin precursor (VTG) [Contains: Lipovitellin LV-1N;| Lipovitellin LV-1C; Lipovitellin LV-2] Length = 1823 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = +2 Query: 116 STPSSALFLHGPAAGSR-----PSATPISHRAPSQLLRGPKHRSNPCSRHEDQEEDSQSR 280 ST S +F+ P+ GSR P + SQ + P H+ P +DQ + R Sbjct: 925 STMESIVFVRDPS-GSRILPVLPPKMTLDKGLISQQQQQPHHQQQPHQHGQDQARAAYQR 983 Query: 281 PW 286 PW Sbjct: 984 PW 985
>CLPP_HUMAN (Q16740) Putative ATP-dependent Clp protease proteolytic subunit,| mitochondrial precursor (EC 3.4.21.92) (Endopeptidase Clp) Length = 277 Score = 29.3 bits (64), Expect = 5.0 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +2 Query: 116 STPSSALFLHGPAAGSRPSATPISHRAPSQLLRGPKHRSNPCSRHEDQ 259 S P+S + +H P+ G+R AT I+ +A ++++ K N ++H Q Sbjct: 169 SLPNSRIMIHQPSGGARGQATDIAIQA-EEIMKLKKQLYNIYAKHTKQ 215
>CLPP_MOUSE (O88696) Putative ATP-dependent Clp protease proteolytic subunit,| mitochondrial precursor (EC 3.4.21.92) (Endopeptidase Clp) Length = 272 Score = 29.3 bits (64), Expect = 5.0 Identities = 15/48 (31%), Positives = 28/48 (58%) Frame = +2 Query: 116 STPSSALFLHGPAAGSRPSATPISHRAPSQLLRGPKHRSNPCSRHEDQ 259 S P+S + +H P+ G+R AT I+ +A ++++ K N ++H Q Sbjct: 165 SLPNSRIMIHQPSGGARGQATDIAIQA-EEIMKLKKQLYNIYAKHTKQ 211
>ATU_DROME (Q94546) Another transcription unit protein| Length = 725 Score = 28.9 bits (63), Expect = 6.6 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = +2 Query: 29 SKLAGSLGP*RSCRSARAFDGPAAGCRT*STPSSALFLHGPAAGSRPSATPISHR--APS 202 S+L+GS RS RSA + +A R TP S + SR S +P S R +P Sbjct: 75 SQLSGSARSKRS-RSAHSRRSGSARSRKSGTPESPQSHRSGSLQSRKSGSPQSRRSGSPQ 133 Query: 203 QLLRGPKHRSNPCSRHEDQEEDSQSR 280 G H S H + ++SR Sbjct: 134 SRKSGSTHSRRSGSAHSRRSGSARSR 159
>GLIS3_HUMAN (Q8NEA6) Zinc finger protein GLIS3 (GLI-similar 3) (Zinc finger| protein 515) Length = 774 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +2 Query: 146 GPAAGSRPSATPISHRAPSQLLRGPKHRSNPCSR 247 G AAG+ P P+SH +P ++G H NP S+ Sbjct: 566 GTAAGAVPPPHPVSHPSPGHNVQGSPH--NPSSQ 597
>CFLAR_MOUSE (O35732) CASP8 and FADD-like apoptosis regulator precursor| (Cellular FLICE-like inhibitory protein) (c-FLIP) (Caspase-eight-related protein) (Casper) (Caspase-like apoptosis regulatory protein) (CLARP) (MACH-related inducer of toxicity) (MRIT Length = 484 Score = 28.9 bits (63), Expect = 6.6 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = -1 Query: 284 KVGFDCPLPDLHGANRDWIYAWDHGEAEKE 195 K G PL DLH D +YAW+ G + KE Sbjct: 436 KQGRRRPLVDLHVELMDKVYAWNSGVSSKE 465
>TOP6B_SULTO (Q971T2) Type II DNA topoisomerase VI subunit B (EC 5.99.1.3)| (TopoVI-B) Length = 532 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +3 Query: 129 RLSSSMDQPPEAAHQPPQSLTELLLSFSVVPSIDPIPVRAMKIRK 263 RL+ + +PP+ P + L+ F +V P+PVR I + Sbjct: 216 RLTDKIPEPPKEVKPHPYGVDIELIKFMIVKKDKPVPVRDFLINE 260
>CATA_CANFA (O97492) Catalase (EC 1.11.1.6)| Length = 526 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -3 Query: 168 GRLPAAGPWRKRAELGVDHVRHPAAGPSKARADLQER*GPRLPASFEQGEPGYY 7 GRL A P R LG ++++ P P +AR +R GP + G P YY Sbjct: 352 GRL-FAYPDTHRHRLGPNYLQIPVNCPFRARVANYQRDGPMCMLDNQGGAPNYY 404
>CATA_BOVIN (P00432) Catalase (EC 1.11.1.6)| Length = 526 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -3 Query: 168 GRLPAAGPWRKRAELGVDHVRHPAAGPSKARADLQER*GPRLPASFEQGEPGYY 7 GRL A P R LG ++++ P P +AR +R GP + G P YY Sbjct: 352 GRL-FAYPDTHRHRLGPNYLQIPVNCPYRARVANYQRDGPMCMMDNQGGAPNYY 404
>UBP49_HUMAN (Q70CQ1) Ubiquitin carboxyl-terminal hydrolase 49 (EC 3.1.2.15)| (Ubiquitin thioesterase 49) (Ubiquitin-specific-processing protease 49) (Deubiquitinating enzyme 49) Length = 688 Score = 28.5 bits (62), Expect = 8.6 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 7/40 (17%) Frame = +2 Query: 116 STP---SSALFLHGPA----AGSRPSATPISHRAPSQLLR 214 STP S+ L LH P A SRP+A P S R P+ L+ Sbjct: 202 STPPRKSARLLLHTPRDAGPAASRPAALPTSRRVPAATLK 241
>FOXN1_MOUSE (Q61575) Forkhead box protein N1 (Transcription factor winged-helix| nude) (Hepatocyte nuclear factor 3 forkhead homolog 11) (HNF-3/forkhead homolog 11) (HFH-11) Length = 648 Score = 28.5 bits (62), Expect = 8.6 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Frame = -3 Query: 246 REQGLDLCLGPRRS*EGAR*EIGVADGRLPAAGPWRKRA-ELGVD---HVRHPAAGPSKA 79 + + LD +G +R G+ +G L GP R A G+ H HPA GP Sbjct: 377 KPEELDSLIGDKREKLGSP-LLGCPPPGLAGPGPIRPMAPSAGLSQPLHPMHPAPGPMPG 435 Query: 78 RADLQER*GPRLPASFEQGEP 16 + LQ+ G P+ + Q P Sbjct: 436 KNPLQDLLGGHAPSCYGQTYP 456
>Y364_BACCR (Q814A6) Hypothetical RNA methyltransferase BC_0364 (EC 2.1.1.-)| Length = 458 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 272 DCPLPDLHGANRDWIYAWDHGEAEKELGERLGWLMGGFRR 153 D P+ + G W+Y +A+ +GER G L+ GF R Sbjct: 118 DVPVHPVLGMKNPWVY---RNKAQVPIGEREGGLVAGFYR 154
>Y333_BACAN (Q81ZD6) Hypothetical RNA methyltransferase BA0333/GBAA0333/BAS0318| (EC 2.1.1.-) Length = 458 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 272 DCPLPDLHGANRDWIYAWDHGEAEKELGERLGWLMGGFRR 153 D P+ + G W+Y +A+ +GER G L+ GF R Sbjct: 118 DVPVHPVLGMKNPWVY---RNKAQVPIGEREGGLVAGFYR 154
>YW91_CAEEL (Q22712) Hypothetical protein T24A11.1 in chromosome III| Length = 938 Score = 28.5 bits (62), Expect = 8.6 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +2 Query: 116 STPSSALFLHGPAAGSRPSATPISHRAPSQLLRGPKHRSNPCSRHEDQE 262 ST SS+L + + +RP PIS ++ S + P+ SRH + Sbjct: 886 STSSSSLNMLASMSPTRPQPIPISCKSSSNSISSPRPSPGEFSRHSSTQ 934
>Y363_BACC1 (Q73EJ5) Hypothetical RNA methyltransferase BCE0363 (EC 2.1.1.-)| Length = 460 Score = 28.5 bits (62), Expect = 8.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 272 DCPLPDLHGANRDWIYAWDHGEAEKELGERLGWLMGGFRR 153 D P+ + G W+Y +A+ +GER G L+ GF R Sbjct: 118 DVPVHPVLGMKNPWVY---RNKAQVPIGEREGGLVAGFYR 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,256,751 Number of Sequences: 219361 Number of extensions: 1255881 Number of successful extensions: 4047 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4045 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
