ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UPP_MYCPA (Q73UD7) Uracil phosphoribosyltransferase (EC 2.4.2.9)... 33 0.28
2VTER_EBV (P03219) Probable DNA packaging protein 30 3.1

>UPP_MYCPA (Q73UD7) Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP|
           pyrophosphorylase) (UPRTase)
          Length = 257

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -3

Query: 341 PNREEAPLARGEAASKSVASNTAWMDLPSAPSQSSR 234
           P+R EAP  RG AA+K+    +A  + PS+ S S+R
Sbjct: 214 PSRPEAPAGRGRAAAKTPGRRSARSESPSSTSPSAR 249



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>VTER_EBV (P03219) Probable DNA packaging protein|
          Length = 690

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +2

Query: 263 DPSRLCC*PRICSLPRLVLAEPLHGSARLCSSRSQLVFKEFWGFRNPRAMEPGDTKFDAS 442
           DP+ L     + SL   +  +  H  ARL + + Q+V   F+   + +++E  DT FD  
Sbjct: 141 DPNFLEMREFVTSLASFLSGQYKHKPARLEAFQKQVVLHSFYFLISIKSLEITDTMFDIF 200

Query: 443 QYAF 454
           Q AF
Sbjct: 201 QSAF 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,616,035
Number of Sequences: 219361
Number of extensions: 702213
Number of successful extensions: 1813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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