ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465073.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3dbj|AP005414.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4dbj|AK070497.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
5ref|XM_465064.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
6gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, co... 44 0.40
7gb|AC155644.7| Mus musculus 10 BAC RP24-435P22 (Roswell Park Can... 44 0.40
8gb|AC118202.8| Mus musculus chromosome 10, clone RP23-378J3, com... 44 0.40
9gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome... 44 0.40
10gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 42 1.6
11ref|XM_466223.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.6
12ref|XM_506827.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 1.6
13gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete s... 42 1.6
14gb|AC149428.1| Populus trichocarpa clone Pop1-080J15, complete s... 42 1.6
15emb|AJ459295.2|SSC459295 Sus scrofa MDGA1 gene for MAM domain co... 42 1.6
16emb|AJ938071.1| Oryza sativa (indica cultivar-group) mRNA for Ty... 42 1.6
17gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence 42 1.6
18gb|AC100863.2| Homo sapiens chromosome 18, clone RP11-751H17, co... 42 1.6
19dbj|AB249662.1| Oryza sativa (japonica cultivar-group) OsRR2 mRN... 42 1.6
20gb|AC007946.6|AC007946 Drosophila melanogaster, chromosome 3R, r... 42 1.6
21dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
22dbj|AK070645.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
23dbj|AK069453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
24gb|AE003752.2| Drosophila melanogaster chromosome 3R, section 90... 42 1.6
25gb|CP000110.1| Synechococcus sp. CC9605, complete genome 40 6.3
26gb|DQ214231.1| Taeniopygia guttata clone 0058P0053G01 mRNA sequence 40 6.3
27gb|DQ214230.1| Taeniopygia guttata clone 0058P0032G03 mRNA sequence 40 6.3
28gb|DQ213406.1| Taeniopygia guttata clone 0064P0018C03 amyloid be... 40 6.3
29gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.3
30emb|CR735143.13| Zebrafish DNA sequence from clone CH211-244P16 ... 40 6.3
31emb|BX936442.10| Zebrafish DNA sequence from clone DKEY-101D4 in... 40 6.3
32gb|AC124510.4| Mus musculus BAC clone RP23-434A8 from chromosome... 40 6.3
33emb|BX640404.2| Chicken DNA sequence from clone WAG-36O23, compl... 40 6.3
34gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, co... 40 6.3
35gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, comp... 40 6.3
36gb|AC134049.24| Medicago truncatula clone mth2-21j3, complete se... 40 6.3
37gb|AY178004.1| Uncultured proteobacterium clone LFc35 photosynth... 40 6.3
38gb|AY178001.1| Uncultured proteobacterium clone LFc32 photosynth... 40 6.3
39gb|AY177997.1| Uncultured proteobacterium clone LFc28 photosynth... 40 6.3
40gb|AY177995.1| Uncultured proteobacterium clone LFc26 photosynth... 40 6.3
41gb|AY177994.1| Uncultured proteobacterium clone LFc25 photosynth... 40 6.3
42gb|AY177993.1| Uncultured proteobacterium clone LFc24 photosynth... 40 6.3
43gb|AY177987.1| Uncultured proteobacterium clone LFc18 photosynth... 40 6.3
44gb|AY177980.1| Uncultured proteobacterium clone LFc11 photosynth... 40 6.3
45gb|AY177975.1| Uncultured proteobacterium clone LFc5 photosynthe... 40 6.3
46emb|BX571704.13| Zebrafish DNA sequence from clone DKEY-33M14 in... 40 6.3
47gb|AC122705.2| Homo sapiens chromosome 5 clone RP11-113N15, comp... 40 6.3
48gb|AC091900.3| Homo sapiens chromosome 5 clone RP11-158K14, comp... 40 6.3
49emb|BX936295.3| Mouse DNA sequence from clone RP23-256P1 on chro... 40 6.3
50gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome... 40 6.3
51dbj|AP003796.2| Gallus gallus genomic DNA, chromosome 5, clone:2... 40 6.3
52emb|CT863711.2| Medicago truncatula chromosome 5 clone mth2-152j... 40 6.3
53dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 6.3
54emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in ... 40 6.3
55gb|AC163626.5| Mus musculus BAC clone RP23-137D2 from chromosome... 40 6.3
56dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.3 
>ref|XM_465073.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3396

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 424 taccaaatttgatgcatcacagtatgctttctttggtaaca 464
           |||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 250 taccaagtttgatgcatcgcagtatgctttctttgggaaca 290
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                         
Query: 424      taccaaatttgatgcatcacagtatgctttctttggtaaca 464
                |||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 11298785 taccaagtttgatgcatcgcagtatgctttctttgggaaca 11298745



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 417      caggtgataccaaatttgatgcatcacagtatgctttctttggtaaca 464
                |||| |||||||| |||||||| || ||||||||||||||||| ||||
Sbjct: 11216258 caggcgataccaagtttgatgcgtcgcagtatgctttctttggcaaca 11216211



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 97       tccccccgccgccggccgagc 117
                |||||||||||||||||||||
Sbjct: 21150318 tccccccgccgccggccgagc 21150338
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>dbj|AP005414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073G17
          Length = 162391

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                       
Query: 424    taccaaatttgatgcatcacagtatgctttctttggtaaca 464
              |||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 101600 taccaagtttgatgcatcgcagtatgctttctttgggaaca 101560



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 417   caggtgataccaaatttgatgcatcacagtatgctttctttggtaaca 464
             |||| |||||||| |||||||| || ||||||||||||||||| ||||
Sbjct: 19073 caggcgataccaagtttgatgcgtcgcagtatgctttctttggcaaca 19026
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>dbj|AK070497.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054B07, full
           insert sequence
          Length = 3396

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 424 taccaaatttgatgcatcacagtatgctttctttggtaaca 464
           |||||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 250 taccaagtttgatgcatcgcagtatgctttctttgggaaca 290
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>ref|XM_465064.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 258

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 422 gataccaaatttgatgcatcacagtatgctttctttggtaaca 464
           |||||||| |||||||| || ||||||||||||||||| ||||
Sbjct: 37  gataccaagtttgatgcgtcgcagtatgctttctttggcaaca 79
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>gb|AC105066.12| Mus musculus chromosome 8, clone RP23-158A22, complete sequence
          Length = 238527

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 79     tctcctcctcttccaccatccc 100
              ||||||||||||||||||||||
Sbjct: 157044 tctcctcctcttccaccatccc 157023
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>gb|AC155644.7| Mus musculus 10 BAC RP24-435P22 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 161533

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 71    tctcccaatctcctcctcttcc 92
             ||||||||||||||||||||||
Sbjct: 12761 tctcccaatctcctcctcttcc 12740
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>gb|AC118202.8| Mus musculus chromosome 10, clone RP23-378J3, complete sequence
          Length = 213862

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 71     tctcccaatctcctcctcttcc 92
              ||||||||||||||||||||||
Sbjct: 166179 tctcccaatctcctcctcttcc 166158
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>gb|AC151909.5| Mus musculus BAC clone RP23-60H14 from chromosome 8, complete sequence
          Length = 208855

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 79     tctcctcctcttccaccatccc 100
              ||||||||||||||||||||||
Sbjct: 194221 tctcctcctcttccaccatccc 194242
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 365    cagcttgttttcaaggaattt 385
              |||||||||||||||||||||
Sbjct: 476731 cagcttgttttcaaggaattt 476751
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>ref|XM_466223.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1412

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  tccccccgccgccggccgagc 117
           |||||||||||||||||||||
Sbjct: 329 tccccccgccgccggccgagc 309
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>ref|XM_506827.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0038F20.11
           mRNA
          Length = 1666

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  tccccccgccgccggccgagc 117
           |||||||||||||||||||||
Sbjct: 357 tccccccgccgccggccgagc 337
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>gb|AC149479.1| Populus trichocarpa clone Pop1-017N13, complete sequence
          Length = 129742

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 430   atttgatgcatcacagtatgctttctttggtaa 462
             |||||||||||| || ||||| |||||||||||
Sbjct: 68659 atttgatgcatctcaatatgcattctttggtaa 68627
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>gb|AC149428.1| Populus trichocarpa clone Pop1-080J15, complete sequence
          Length = 98246

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 430   atttgatgcatcacagtatgctttctttggtaa 462
             |||||||||||| || ||||| |||||||||||
Sbjct: 44037 atttgatgcatctcaatatgcattctttggtaa 44005
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>emb|AJ459295.2|SSC459295 Sus scrofa MDGA1 gene for MAM domain containing
             glycosylphosphatidylinositol anchor 1 protein, exons 3-17
          Length = 27671

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    cccaatctcctcctcttccaccatc 98
             |||||||||||||||| ||||||||
Sbjct: 13969 cccaatctcctcctctcccaccatc 13993
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>emb|AJ938071.1| Oryza sativa (indica cultivar-group) mRNA for Type A response
           regulator 2 (rr2 gene)
          Length = 759

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  tccccccgccgccggccgagc 117
           |||||||||||||||||||||
Sbjct: 191 tccccccgccgccggccgagc 171
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>gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence
          Length = 185590

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 74     cccaatctcctcctcttccaccatc 98
              ||||| |||||||||||||||||||
Sbjct: 114096 cccaacctcctcctcttccaccatc 114072
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>gb|AC100863.2| Homo sapiens chromosome 18, clone RP11-751H17, complete sequence
          Length = 175527

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 74    cccaatctcctcctcttccaccatc 98
             ||||| |||||||||||||||||||
Sbjct: 23779 cccaacctcctcctcttccaccatc 23755
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>dbj|AB249662.1| Oryza sativa (japonica cultivar-group) OsRR2 mRNA for typeA
           response regulator 2, complete cds
          Length = 759

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  tccccccgccgccggccgagc 117
           |||||||||||||||||||||
Sbjct: 191 tccccccgccgccggccgagc 171
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>gb|AC007946.6|AC007946 Drosophila melanogaster, chromosome 3R, region 96E-96F, BAC clone
             BACR03O03, complete sequence
          Length = 132168

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 350   tgctcttcgagatctcagctt 370
             |||||||||||||||||||||
Sbjct: 51663 tgctcttcgagatctcagctt 51683
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>dbj|AP005808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0038F20
          Length = 129595

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    tccccccgccgccggccgagc 117
             |||||||||||||||||||||
Sbjct: 57034 tccccccgccgccggccgagc 57054
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>dbj|AK070645.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061L14, full
           insert sequence
          Length = 1666

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  tccccccgccgccggccgagc 117
           |||||||||||||||||||||
Sbjct: 357 tccccccgccgccggccgagc 337
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>dbj|AK069453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020J18, full
           insert sequence
          Length = 1412

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 97  tccccccgccgccggccgagc 117
           |||||||||||||||||||||
Sbjct: 329 tccccccgccgccggccgagc 309
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>gb|AE003752.2| Drosophila melanogaster chromosome 3R, section 90 of 118 of the
             complete sequence
          Length = 188285

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 350   tgctcttcgagatctcagctt 370
             |||||||||||||||||||||
Sbjct: 62177 tgctcttcgagatctcagctt 62197
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 38      agcacaacctgcttctgccgttcc 61
               |||||||||||| |||||||||||
Sbjct: 1251102 agcacaacctgcctctgccgttcc 1251079
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>gb|DQ214231.1| Taeniopygia guttata clone 0058P0053G01 mRNA sequence
          Length = 1190

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 100 ccccgccgccggccgagccc 119
           ||||||||||||||||||||
Sbjct: 619 ccccgccgccggccgagccc 638
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>gb|DQ214230.1| Taeniopygia guttata clone 0058P0032G03 mRNA sequence
          Length = 1190

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 100 ccccgccgccggccgagccc 119
           ||||||||||||||||||||
Sbjct: 619 ccccgccgccggccgagccc 638
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>gb|DQ213406.1| Taeniopygia guttata clone 0064P0018C03 amyloid beta (A4) precursor
           protein-binding-like mRNA, complete sequence
          Length = 1213

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 335 ggttcggctcggctctgctc 354
           ||||||||||||||||||||
Sbjct: 278 ggttcggctcggctctgctc 259
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     tctcctcctcttccaccatc 98
              ||||||||||||||||||||
Sbjct: 307420 tctcctcctcttccaccatc 307439
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>emb|CR735143.13| Zebrafish DNA sequence from clone CH211-244P16 in linkage group 5,
             complete sequence
          Length = 147626

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   atgctttctttggtaacatg 466
             ||||||||||||||||||||
Sbjct: 53020 atgctttctttggtaacatg 53039
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>emb|BX936442.10| Zebrafish DNA sequence from clone DKEY-101D4 in linkage group 21,
              complete sequence
          Length = 229721

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     aatctcctcctcttccacca 96
              ||||||||||||||||||||
Sbjct: 132223 aatctcctcctcttccacca 132242
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>gb|AC124510.4| Mus musculus BAC clone RP23-434A8 from chromosome 12, complete sequence
          Length = 194104

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   cttgttttcaaggaattttg 387
             ||||||||||||||||||||
Sbjct: 75874 cttgttttcaaggaattttg 75893
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>emb|BX640404.2| Chicken DNA sequence from clone WAG-36O23, complete sequence
          Length = 136520

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   ggttcggctcggctctgctc 354
             ||||||||||||||||||||
Sbjct: 88825 ggttcggctcggctctgctc 88844
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>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence
          Length = 214124

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    tgctagccacggatttgctc 300
              ||||||||||||||||||||
Sbjct: 111774 tgctagccacggatttgctc 111755
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>gb|AC025047.17| Mus musculus chromosome 1, clone RP23-56I8, complete sequence
          Length = 220713

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 80    ctcctcctcttccaccatcccccc 103
             ||||||||||||| ||||||||||
Sbjct: 35853 ctcctcctcttcccccatcccccc 35876
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>gb|AC134049.24| Medicago truncatula clone mth2-21j3, complete sequence
          Length = 124857

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 317  ctagcggagcctcttcacggttcg 340
            |||||||||| |||||||||||||
Sbjct: 2007 ctagcggagcatcttcacggttcg 1984
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>gb|AY178004.1| Uncultured proteobacterium clone LFc35 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>gb|AY178001.1| Uncultured proteobacterium clone LFc32 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>gb|AY177997.1| Uncultured proteobacterium clone LFc28 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>gb|AY177995.1| Uncultured proteobacterium clone LFc26 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>gb|AY177994.1| Uncultured proteobacterium clone LFc25 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>gb|AY177993.1| Uncultured proteobacterium clone LFc24 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>gb|AY177987.1| Uncultured proteobacterium clone LFc18 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>gb|AY177980.1| Uncultured proteobacterium clone LFc11 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>gb|AY177975.1| Uncultured proteobacterium clone LFc5 photosynthetic reaction
           center M subunit (pufM) gene, partial cds
          Length = 229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 339 cggctcggctctgctcttcg 358
           ||||||||||||||||||||
Sbjct: 89  cggctcggctctgctcttcg 108
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>emb|BX571704.13| Zebrafish DNA sequence from clone DKEY-33M14 in linkage group 9, complete
              sequence
          Length = 219065

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    cttcgagatctcagcttgttttca 377
              ||||| ||||||||||||||||||
Sbjct: 161988 cttcgtgatctcagcttgttttca 162011
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>gb|AC122705.2| Homo sapiens chromosome 5 clone RP11-113N15, complete sequence
          Length = 68035

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   atgctttctttggtaacatg 466
             ||||||||||||||||||||
Sbjct: 42030 atgctttctttggtaacatg 42049
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>gb|AC091900.3| Homo sapiens chromosome 5 clone RP11-158K14, complete sequence
          Length = 180679

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    atgctttctttggtaacatg 466
              ||||||||||||||||||||
Sbjct: 171344 atgctttctttggtaacatg 171325
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>emb|BX936295.3| Mouse DNA sequence from clone RP23-256P1 on chromosome 2, complete
             sequence
          Length = 56898

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    atctcctcctcttccaccat 97
             ||||||||||||||||||||
Sbjct: 22949 atctcctcctcttccaccat 22930
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>gb|AC152939.2| Mus musculus BAC clone RP23-312I2 from chromosome 7, complete sequence
          Length = 205980

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    cctcctcttccaccatcccc 101
             ||||||||||||||||||||
Sbjct: 50076 cctcctcttccaccatcccc 50057
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>dbj|AP003796.2| Gallus gallus genomic DNA, chromosome 5, clone:26D12, complete
            sequence
          Length = 156014

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  ggttcggctcggctctgctc 354
            ||||||||||||||||||||
Sbjct: 1940 ggttcggctcggctctgctc 1921
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>emb|CT863711.2| Medicago truncatula chromosome 5 clone mth2-152j13, COMPLETE SEQUENCE
          Length = 108806

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 317   ctagcggagcctcttcacggttcg 340
             |||||||||| |||||||||||||
Sbjct: 18002 ctagcggagcatcttcacggttcg 18025
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>dbj|AP000560.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-8M21, complete
             sequence
          Length = 118300

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    tctcccaatctcctcctctt 90
             ||||||||||||||||||||
Sbjct: 76457 tctcccaatctcctcctctt 76438
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>emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in linkage group 5,
             complete sequence
          Length = 227454

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   atgctttctttggtaacatg 466
             ||||||||||||||||||||
Sbjct: 99582 atgctttctttggtaacatg 99563
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>gb|AC163626.5| Mus musculus BAC clone RP23-137D2 from chromosome 1, complete sequence
          Length = 219189

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    ctcctcctcttccaccatcccccc 103
             ||||||||||||| ||||||||||
Sbjct: 40496 ctcctcctcttcccccatcccccc 40473
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>dbj|AP001324.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-864N7, complete
              sequences
          Length = 230157

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     tctcccaatctcctcctctt 90
              ||||||||||||||||||||
Sbjct: 203724 tctcccaatctcctcctctt 203705


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,085,522
Number of Sequences: 3902068
Number of extensions: 3085522
Number of successful extensions: 65737
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65559
Number of HSP's gapped (non-prelim): 178
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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