ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27e07 |
|---|---|
| Clone Library Name | barley_pub |
>STAR8_MOUSE (Q8K031) StAR-related lipid transfer protein 8 (StARD8) (START| domain-containing protein 8) Length = 1019 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -2 Query: 349 SRSIEPERAEQPLVGRTASEGDTIALPPPRG 257 S S+ PE A+QPL+G S + L PP+G Sbjct: 82 SASLSPESADQPLLGLVPSPSNQPFLSPPQG 112
>Y288_THEMA (Q9WYC4) Hypothetical ABC transporter ATP-binding protein TM0288| Length = 598 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +2 Query: 17 PPTPPLRRPAMEIPTATIHRLLSSIREGT 103 P P L +PA++ PTAT+ RLL +R T Sbjct: 8 PHGPILEKPALKNPTATLRRLLGYLRPHT 36
>GPNMB_RAT (Q6P7C7) Transmembrane glycoprotein NMB precursor| Length = 572 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/51 (35%), Positives = 25/51 (49%) Frame = -3 Query: 414 NPPFGFSLLLFESVESPSNSTRADPSSRSEPSNHW*AALPRKAIPSPSPRL 262 N F F+L + +V P S PSS + PS A+ P + +PSP L Sbjct: 306 NGTFNFNLTVQTAVPGPCPSPTPSPSSSTSPSP---ASSPSPTLSTPSPSL 353
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/39 (51%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = -3 Query: 369 SPSNSTRADPSSRSEPSNHW*AALPRK---AIPSPSPRL 262 SPS S PS RS P H PRK A PSPSP L Sbjct: 168 SPSPSPSPSPSPRSTPIPH-----PRKRSPASPSPSPSL 201
>Y2307_MYCTU (Q50658) Hypothetical protein Rv2307c/MT2364| Length = 281 Score = 29.3 bits (64), Expect = 4.5 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = +2 Query: 248 YCGSPRRGEGDGIAFRGSAAYQWLLGSLRLDGSALVEFD---GDSTDSNKSKEKPKGGLV 418 Y G+P R G+A AA +WL G +D + + F G + + ++P LV Sbjct: 116 YGGNPGRPSEQGLAADARAAQEWLSGQSDVDPARIAYFGESLGAAVAVGLAVQRPPAALV 175 Query: 419 L 421 L Sbjct: 176 L 176
>RHG06_HUMAN (O43182) Rho-GTPase-activating protein 6 (Rho-type| GTPase-activating protein RhoGAPX-1) Length = 974 Score = 29.3 bits (64), Expect = 4.5 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = -1 Query: 419 KPTHPLAFPCFYLNL*SHHQILREQIHRAGA-SRATTG--RPHCLGRRYHRPPP 267 K P A YL L H + ++ AG SRAT RPH GR RPPP Sbjct: 829 KAERPTARSEQYLTLSGAHDLSESELDVAGLQSRATPQCQRPHGSGRDDKRPPP 882
>CY24A_RAT (Q62737) Cytochrome b-245 light chain (p22 phagocyte B-cytochrome)| (Neutrophil cytochrome b 22 kDa polypeptide) (p22-phox) (p22phox) (Cytochrome b(558) alpha chain) (Cytochrome b558 alpha subunit) (Superoxide-generating NADPH oxidase light chai Length = 191 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 409 TLWLFLAFI*ICRVTIKFYESRSIEPERAEQPLVGRTASEGDTIALPPPRGPA 251 T+ L +A + I+ + IEP+ E+P VG T + T PPPR PA Sbjct: 110 TVCLAIASVIYLLAAIRGEQWTPIEPKPKERPQVGGTIKQPPT--NPPPRPPA 160
>CY24A_MOUSE (Q61462) Cytochrome b-245 light chain (p22 phagocyte B-cytochrome)| (Neutrophil cytochrome b 22 kDa polypeptide) (p22-phox) (p22phox) (Cytochrome b(558) alpha chain) (Cytochrome b558 alpha subunit) (Superoxide-generating NADPH oxidase light ch Length = 191 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/53 (35%), Positives = 27/53 (50%) Frame = -2 Query: 409 TLWLFLAFI*ICRVTIKFYESRSIEPERAEQPLVGRTASEGDTIALPPPRGPA 251 T+ L +A + I+ + IEP+ E+P VG T + T PPPR PA Sbjct: 110 TVCLAIASVIYLLAAIRGEQWTPIEPKPKERPQVGGTIKQPPT--NPPPRPPA 160
>DNBI_HHV1K (P17470) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +3 Query: 255 GPLGGGRAMVSPSEAVRPTSGCSARSGSMDLLS*NLMVTLQIQ 383 GPLG A PSE + + SARSG D+ L+V L ++ Sbjct: 16 GPLGYVYARACPSEGIELLALLSARSGDADVAVAPLVVGLTVE 58
>DNBI_HHV1F (P17469) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +3 Query: 255 GPLGGGRAMVSPSEAVRPTSGCSARSGSMDLLS*NLMVTLQIQ 383 GPLG A PSE + + SARSG D+ L+V L ++ Sbjct: 16 GPLGYVYARACPSEGIELLALLSARSGDSDVAVAPLVVGLTVE 58
>DNBI_HHV11 (P04296) Major DNA-binding protein (Infected cell protein 8) (ICP 8| protein) Length = 1196 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = +3 Query: 255 GPLGGGRAMVSPSEAVRPTSGCSARSGSMDLLS*NLMVTLQIQ 383 GPLG A PSE + + SARSG D+ L+V L ++ Sbjct: 16 GPLGYVYARACPSEGIELLALLSARSGDSDVAVAPLVVGLTVE 58
>Y1533_ARCFU (O28739) Hypothetical transport protein AF1533| Length = 278 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +2 Query: 236 AICVYCGSPRRGEGDGIAFRGSAAYQWLLGSLRLD 340 A+ + GS +GE G+ + AA+ W L L LD Sbjct: 130 AVYIIYGSGEKGETSGLFYALLAAFSWALAILTLD 164 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,058,081 Number of Sequences: 219361 Number of extensions: 968875 Number of successful extensions: 3680 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3678 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
