ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27e07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482680.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3033 Score = 79.8 bits (40), Expect = 7e-12 Identities = 132/162 (81%), Gaps = 3/162 (1%) Strand = Plus / Plus Query: 187 gtgcgggcgctgcggcgcagcgggcggcctcctccgtggcgcgcagtccgccatctgcgt 246 |||||| |||||||| || ||||| || |||||||| |||| | ||||||| | |||| Sbjct: 165 gtgcggccgctgcggggccgcgggggggctcctccgcggcgaggggtccgccgtgtgcgc 224 Query: 247 ctactgcgggtcccctaggcggggggagggcgatggtat---cgccttccgaggcagtgc 303 ||||||||||| ||| ||||||| || | ||| ||| | ||||||||| ||||||| Sbjct: 225 ctactgcgggtgccccaggcgggaggggtgcggcggtgtcgccgccttccgcggcagtgt 284 Query: 304 ggcctaccagtggttgctcggctcgctccggctcgatggatc 345 ||| |||| |||| |||||||||||||| |||| |||||||| Sbjct: 285 ggcgtaccggtggctgctcggctcgctcgggctggatggatc 326 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 125 cccttcccctccgtcgccgacgccgtcgctgccttcga 162 ||||||||||||||||| |||||||| || |||||||| Sbjct: 88 cccttcccctccgtcgcggacgccgtggccgccttcga 125
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 7e-12 Identities = 132/162 (81%), Gaps = 3/162 (1%) Strand = Plus / Minus Query: 187 gtgcgggcgctgcggcgcagcgggcggcctcctccgtggcgcgcagtccgccatctgcgt 246 |||||| |||||||| || ||||| || |||||||| |||| | ||||||| | |||| Sbjct: 21848706 gtgcggccgctgcggggccgcgggggggctcctccgcggcgaggggtccgccgtgtgcgc 21848647 Query: 247 ctactgcgggtcccctaggcggggggagggcgatggtat---cgccttccgaggcagtgc 303 ||||||||||| ||| ||||||| || | ||| ||| | ||||||||| ||||||| Sbjct: 21848646 ctactgcgggtgccccaggcgggaggggtgcggcggtgtcgccgccttccgcggcagtgt 21848587 Query: 304 ggcctaccagtggttgctcggctcgctccggctcgatggatc 345 ||| |||| |||| |||||||||||||| |||| |||||||| Sbjct: 21848586 ggcgtaccggtggctgctcggctcgctcgggctggatggatc 21848545 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 125 cccttcccctccgtcgccgacgccgtcgctgccttcga 162 ||||||||||||||||| |||||||| || |||||||| Sbjct: 21848783 cccttcccctccgtcgcggacgccgtggccgccttcga 21848746
>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0429B05 Length = 155024 Score = 79.8 bits (40), Expect = 7e-12 Identities = 132/162 (81%), Gaps = 3/162 (1%) Strand = Plus / Minus Query: 187 gtgcgggcgctgcggcgcagcgggcggcctcctccgtggcgcgcagtccgccatctgcgt 246 |||||| |||||||| || ||||| || |||||||| |||| | ||||||| | |||| Sbjct: 128289 gtgcggccgctgcggggccgcgggggggctcctccgcggcgaggggtccgccgtgtgcgc 128230 Query: 247 ctactgcgggtcccctaggcggggggagggcgatggtat---cgccttccgaggcagtgc 303 ||||||||||| ||| ||||||| || | ||| ||| | ||||||||| ||||||| Sbjct: 128229 ctactgcgggtgccccaggcgggaggggtgcggcggtgtcgccgccttccgcggcagtgt 128170 Query: 304 ggcctaccagtggttgctcggctcgctccggctcgatggatc 345 ||| |||| |||| |||||||||||||| |||| |||||||| Sbjct: 128169 ggcgtaccggtggctgctcggctcgctcgggctggatggatc 128128 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 125 cccttcccctccgtcgccgacgccgtcgctgccttcga 162 ||||||||||||||||| |||||||| || |||||||| Sbjct: 128366 cccttcccctccgtcgcggacgccgtggccgccttcga 128329
>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0409A07 Length = 146663 Score = 79.8 bits (40), Expect = 7e-12 Identities = 132/162 (81%), Gaps = 3/162 (1%) Strand = Plus / Minus Query: 187 gtgcgggcgctgcggcgcagcgggcggcctcctccgtggcgcgcagtccgccatctgcgt 246 |||||| |||||||| || ||||| || |||||||| |||| | ||||||| | |||| Sbjct: 49375 gtgcggccgctgcggggccgcgggggggctcctccgcggcgaggggtccgccgtgtgcgc 49316 Query: 247 ctactgcgggtcccctaggcggggggagggcgatggtat---cgccttccgaggcagtgc 303 ||||||||||| ||| ||||||| || | ||| ||| | ||||||||| ||||||| Sbjct: 49315 ctactgcgggtgccccaggcgggaggggtgcggcggtgtcgccgccttccgcggcagtgt 49256 Query: 304 ggcctaccagtggttgctcggctcgctccggctcgatggatc 345 ||| |||| |||| |||||||||||||| |||| |||||||| Sbjct: 49255 ggcgtaccggtggctgctcggctcgctcgggctggatggatc 49214 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 125 cccttcccctccgtcgccgacgccgtcgctgccttcga 162 ||||||||||||||||| |||||||| || |||||||| Sbjct: 49452 cccttcccctccgtcgcggacgccgtggccgccttcga 49415
>ref|XM_342228.2| PREDICTED: Rattus norvegicus similar to Potential phospholipid-transporting ATPase IF (ATPase class I type 11B) (ATPase IR) (LOC361929), mRNA Length = 4835 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 130 cccctccgtcgccgacgccgtcg 152 ||||||||||||||||||||||| Sbjct: 236 cccctccgtcgccgacgccgtcg 214
>gb|AC009242.5| Homo sapiens BAC clone RP11-557N21 from 2, complete sequence Length = 158395 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 ccctgcccctcccttcccctcc 136 |||||||||||||||||||||| Sbjct: 76158 ccctgcccctcccttcccctcc 76137
>gb|AC092758.3| Papio anubis clone RP41-22J16, complete sequence Length = 171690 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 115 ccctgcccctcccttcccctcc 136 |||||||||||||||||||||| Sbjct: 104067 ccctgcccctcccttcccctcc 104088
>gb|M37402.1|CLACG Plasmid ColA, complete genome Length = 6720 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 98 ggcaccaccgccgcgccccctg 119 |||||||||||||||||||||| Sbjct: 415 ggcaccaccgccgcgccccctg 394
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 105 ccgccgcgccccctgcccctcccttcccc 133 ||||||||| ||| ||||||||||||||| Sbjct: 285010 ccgccgcgcgcccggcccctcccttcccc 284982
>gb|AC104711.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1320_D10, complete sequence Length = 134183 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 tcccctccgtcgccgacgccg 149 ||||||||||||||||||||| Sbjct: 50950 tcccctccgtcgccgacgccg 50930
>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence Length = 248320 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 caccgccgcgccccctgcccctccc 127 ||||||| ||||||||||||||||| Sbjct: 223983 caccgccccgccccctgcccctccc 223959
>emb|AL133355.13| Human DNA sequence from clone RP11-541N10 on chromosome 10 Contains the 5' end of the SH3MD1 gene for SH3 multiple domains 1, a novel gene and two CpG islands, complete sequence Length = 190882 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 386 aaaagcaaggaaaagccaaag 406 ||||||||||||||||||||| Sbjct: 109459 aaaagcaaggaaaagccaaag 109479
>emb|AL928857.15| Mouse DNA sequence from clone RP24-499A8 on chromosome 11 Contains the 5' end of the Gemin5 gene for gem (nuclear organelle) associated protein 5, a novel gene, a interferon gamma inducible protein (Ifi47) pseudogene, the Igtp gene for interferon gamma induced GTPase, the Gtpi-pending gene for interferon-g induced GTPase, a novel gene and one CpG island, complete sequence Length = 133633 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 aaagcaaggaaaagccaaagg 407 ||||||||||||||||||||| Sbjct: 106798 aaagcaaggaaaagccaaagg 106818
>gb|AC113029.23| Mus musculus chromosome 5, clone RP23-206J17, complete sequence Length = 223809 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 103 caccgccgcgccccctgcccctccc 127 ||||||| ||||||||||||||||| Sbjct: 176909 caccgccccgccccctgcccctccc 176933
>gb|AC154763.2| Mus musculus BAC clone RP24-422J16 from chromosome 16, complete sequence Length = 156818 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ctgcccctcccttcccctccg 137 ||||||||||||||||||||| Sbjct: 102207 ctgcccctcccttcccctccg 102227
>gb|AC175467.3| Pan troglodytes BAC clone CH251-302C22 from chromosome unknown, complete sequence Length = 186532 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Minus Query: 97 gggcaccaccgccgcgccccctgcccctcccttcccc 133 ||||||| |||||| |||||||||||||||| |||| Sbjct: 98791 gggcacccacgccgcaccccctgcccctccctacccc 98755
>gb|AC183302.2| Pan troglodytes BAC clone CH251-258O5 from chromosome unknown, complete sequence Length = 211208 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 97 gggcaccaccgccgcgccccctgcccctcccttcccc 133 ||||||| |||||| |||||||||||||||| |||| Sbjct: 1719 gggcacccacgccgcaccccctgcccctccctacccc 1755
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 tcccctccgtcgccgacgccg 149 ||||||||||||||||||||| Sbjct: 16552211 tcccctccgtcgccgacgccg 16552191
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 ccgccgcgccccctgcccctc 125 ||||||||||||||||||||| Sbjct: 6943164 ccgccgcgccccctgcccctc 6943184 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ccgccgcgccccctgcccct 124 |||||||||||||||||||| Sbjct: 28240539 ccgccgcgccccctgcccct 28240520
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 ccgccgcgccccctgcccctc 125 ||||||||||||||||||||| Sbjct: 110888 ccgccgcgccccctgcccctc 110908
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 105 ccgccgcgccccctgcccctc 125 ||||||||||||||||||||| Sbjct: 64982 ccgccgcgccccctgcccctc 65002
>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome Length = 189370 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 191 gggcgctgcggcgcagcgggcggcc 215 |||||| |||||||||||||||||| Sbjct: 15083 gggcgcggcggcgcagcgggcggcc 15059
>gb|AC166821.2| Mus musculus BAC clone RP24-68F22 from chromosome 17, complete sequence Length = 202649 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 127397 ccccctccccctcccttcccctcc 127420
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 agattcaaataaaagcaaggaaaa 399 |||| ||||||||||||||||||| Sbjct: 28912 agatacaaataaaagcaaggaaaa 28935
>gb|AC115818.9| Mus musculus chromosome 1, clone RP23-433A12, complete sequence Length = 186895 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ccccctgcccctcccttcccctcc 136 ||||||||||||||||||| |||| Sbjct: 116192 ccccctgcccctcccttcctctcc 116169
>ref|XM_322835.1| Neurospora crassa OR74A hypothetical protein (NCU03578.1) partial mRNA Length = 7452 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cgagagggcaccaccgccgc 111 |||||||||||||||||||| Sbjct: 54 cgagagggcaccaccgccgc 73
>ref|XM_950924.1| Neurospora crassa OR74A hypothetical protein (NCU03578.1) partial mRNA Length = 7452 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cgagagggcaccaccgccgc 111 |||||||||||||||||||| Sbjct: 54 cgagagggcaccaccgccgc 73
>gb|AC163353.3| Mus musculus BAC clone RP23-55G7 from chromosome 6, complete sequence Length = 264135 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ctgcccctcccttcccctcc 136 |||||||||||||||||||| Sbjct: 91905 ctgcccctcccttcccctcc 91886
>ref|XM_822816.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.61.2500) partial mRNA Length = 345 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 caaataaaagcaaggaaaag 400 |||||||||||||||||||| Sbjct: 133 caaataaaagcaaggaaaag 114
>gb|AC127250.3| Mus musculus BAC clone RP24-482H23 from chromosome 3, complete sequence Length = 136942 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 78837 ccccctccccctcccttcccctcc 78814
>emb|BX663531.3| Chicken DNA sequence from clone WAG-18M1, complete sequence Length = 111106 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 agccaaagggtgggttggtt 418 |||||||||||||||||||| Sbjct: 26673 agccaaagggtgggttggtt 26692
>gb|AC116138.21| Mus musculus chromosome 10, clone RP23-123D17, complete sequence Length = 219004 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 2978 cccccttcccctcccttcccctcc 2955 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 2944 cccccttcccctcccttcccctcc 2921
>gb|AC116465.8| Mus musculus chromosome 10, clone RP23-64J3, complete sequence Length = 237801 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 ctctacagattcaaataaaagcaa 393 |||||||| ||||||||||||||| Sbjct: 37661 ctctacagcttcaaataaaagcaa 37638
>gb|AY333070.1| Drosophila virilis antennapedia (Antp), CG10013 (CG10013), CG31217 (CG31217), and ultrabithorax (Ubx) genes, complete cds Length = 308092 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 ccgtcgccgacgccgtcgctgcct 158 ||||||||| |||||||||||||| Sbjct: 18610 ccgtcgccgtcgccgtcgctgcct 18633
>emb|BX571793.2| Human DNA sequence from clone WI2-801302G5 on chromosome 1, complete sequence Length = 35616 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 13549 ccccctccccctcccttcccctcc 13526
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gtcgccgacgccgtcgctgc 156 |||||||||||||||||||| Sbjct: 3485954 gtcgccgacgccgtcgctgc 3485935
>emb|AL160267.17| Human DNA sequence from clone RP11-117O7 on chromosome 9q21.11-21.33 Contains a pseudogene similar to part of cytochrome c oxidase I (MTCO3) and a NADH dehydrogenase 2 (MTND2) pseudogene, complete sequence Length = 158315 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gattcaaataaaagcaagga 396 |||||||||||||||||||| Sbjct: 53153 gattcaaataaaagcaagga 53172
>emb|AL109824.24|HSJ1181N3 Human DNA sequence from clone RP5-1181N3 on chromosome 20 Contains the C20orf110 gene for chromosome 20 open reading frame 110, the NCOA6 gene for the thyroid hormone receptor binding protein (KIAA0181), the 5' end of a novel gene and CpG islands, complete sequence Length = 92196 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ccccctgcccctcccttcccctcc 136 ||||||||||||||| |||||||| Sbjct: 2416 ccccctgcccctcccctcccctcc 2393
>gb|AC157787.6| Mus musculus chromosome 1, clone RP23-158A6, complete sequence Length = 199981 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 ||||||||||||||||||| |||| Sbjct: 41883 ccccctgcccctcccttcctctcc 41906
>gb|AY125214.1| Thymallus arcticus internal transcribed spacer 1, complete sequence Length = 537 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 109 cgcgccccctgcccctcccttccc 132 ||||||||||||| |||||||||| Sbjct: 79 cgcgccccctgcctctcccttccc 102
>gb|AC105162.11| Mus musculus chromosome 1, clone RP24-92O11, complete sequence Length = 177420 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 gattcaaataaaagcaaggaaaag 400 |||||||||||||||| ||||||| Sbjct: 137060 gattcaaataaaagcatggaaaag 137037
>emb|BX284746.1|NCB23I4 Neurospora crassa DNA linkage group II BAC contig B23I4 Length = 71047 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cgagagggcaccaccgccgc 111 |||||||||||||||||||| Sbjct: 18401 cgagagggcaccaccgccgc 18420
>gb|AC117419.5| Homo sapiens 3 BAC RP11-138C11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 63032 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 41648 ccccctccccctcccttcccctcc 41671
>emb|AL096775.10|HSDJ336M4 Human DNA sequence from clone RP3-336M4 on chromosome 1p36.11-36.2 Contains the 5' UTR of the gene Miz-1, pseudogenes similar to part of Carboxypeptidase D, Tre oncogene and Tre-2 oncogene (USP6), a putative novel gene and the 3' end of the gene for a cardiovascular heat shock protein. Contains ESTs, STSs, GSSs and two putative CpG islands, complete sequence Length = 76241 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 54189 ccccctccccctcccttcccctcc 54166
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gtcgccgacgccgtcgctgc 156 |||||||||||||||||||| Sbjct: 2119052 gtcgccgacgccgtcgctgc 2119071
>gb|AC158604.5| Mus musculus 10 BAC RP23-130B2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190024 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 11726 cccccttcccctcccttcccctcc 11749 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 11692 cccccttcccctcccttcccctcc 11715
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tgccacaatccatcgcctcc 80 |||||||||||||||||||| Sbjct: 2270574 tgccacaatccatcgcctcc 2270555
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 acgccgtcgctgccttcgaagccg 167 |||||||||||||| ||||||||| Sbjct: 3914086 acgccgtcgctgccatcgaagccg 3914109
>gb|AC027687.7| Homo sapiens chromosome 16 clone RP11-61L4, complete sequence Length = 169166 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 160538 cccccttcccctcccttcccctcc 160561
>gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromosome 7, complete sequence Length = 222089 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 ccctgcccctcccttcccctccgt 138 |||| ||||||||||||||||||| Sbjct: 127533 cccttcccctcccttcccctccgt 127556
>dbj|AP004717.1| Gallus gallus genomic DNA, chromosome 5, clone:161D9, complete sequence Length = 221022 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 agccaaagggtgggttggtt 418 |||||||||||||||||||| Sbjct: 122462 agccaaagggtgggttggtt 122443
>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0478H03 Length = 167560 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ccgccgcgccccctgcccct 124 |||||||||||||||||||| Sbjct: 75046 ccgccgcgccccctgcccct 75027
>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445E10 Length = 145912 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ccgccgcgccccctgcccct 124 |||||||||||||||||||| Sbjct: 124533 ccgccgcgccccctgcccct 124514
>gb|AC141643.4| Mus musculus BAC clone RP23-198F6 from chromosome 7, complete sequence Length = 237233 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 ctgcccctcccttcccctcc 136 |||||||||||||||||||| Sbjct: 22968 ctgcccctcccttcccctcc 22987
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 cctccgtcgccgacgccgtc 151 |||||||||||||||||||| Sbjct: 2878345 cctccgtcgccgacgccgtc 2878326
>gb|AC107822.18| Mus musculus chromosome 7, clone RP23-182C11, complete sequence Length = 220443 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ctgcccctcccttcccctcc 136 |||||||||||||||||||| Sbjct: 14926 ctgcccctcccttcccctcc 14907
>emb|AL929153.11| Mouse DNA sequence from clone RP23-55C8 on chromosome 2, complete sequence Length = 116887 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 93941 ccccctccccctcccttcccctcc 93964
>dbj|AK110519.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-167-H01, full insert sequence Length = 1415 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 ccgccgcgccccctgcccct 124 |||||||||||||||||||| Sbjct: 675 ccgccgcgccccctgcccct 656
>gb|AC153933.3| Mus musculus 10 BAC RP24-282I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179847 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 370 ctctacagattcaaataaaagcaa 393 |||||||| ||||||||||||||| Sbjct: 139909 ctctacagcttcaaataaaagcaa 139886
>gb|AF139128.1|AF139128 Coturnix coturnix japonica fast troponin T isoform (TnTf) gene, complete cds Length = 33434 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 agccaaagggtgggttggtt 418 |||||||||||||||||||| Sbjct: 8558 agccaaagggtgggttggtt 8577
>gb|AC110248.22| Mus musculus chromosome 3, clone RP23-257P11, complete sequence Length = 206915 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 |||||||||||||||| ||||||| Sbjct: 108157 ccccctgcccctccctccccctcc 108180
>dbj|AB085171.1| Gallus gallus gene for fast skeletal muscle troponin T isoform, complete cds Length = 33941 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 agccaaagggtgggttggtt 418 |||||||||||||||||||| Sbjct: 8556 agccaaagggtgggttggtt 8575
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tggagatccccactgccaca 67 |||||||||||||||||||| Sbjct: 1209978 tggagatccccactgccaca 1209959
>dbj|AB052913.1| Mus musculus gene for AMY-1, complete cds Length = 11335 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ccaccgccgcgccccctgcccctc 125 |||||||| ||||||||||||||| Sbjct: 4687 ccaccgccccgccccctgcccctc 4710
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cgtcgccgacgccgtcgctg 155 |||||||||||||||||||| Sbjct: 525996 cgtcgccgacgccgtcgctg 526015
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 gcgccccctgcccctcccttcccc 133 |||||||||||||||| ||||||| Sbjct: 1135469 gcgccccctgcccctcgcttcccc 1135446
>gb|AC163671.5| Mus musculus BAC clone RP23-21K2 from chromosome 3, complete sequence Length = 215382 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 |||||| ||||||||||||||||| Sbjct: 182241 ccccctccccctcccttcccctcc 182264
>gb|AC132228.3| Mus musculus BAC clone RP24-480G11 from 6, complete sequence Length = 180203 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 ctgcccctcccttcccctcc 136 |||||||||||||||||||| Sbjct: 70804 ctgcccctcccttcccctcc 70785
>gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromosome unknown, complete sequence Length = 237526 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 agccaaagggtgggttggtt 418 |||||||||||||||||||| Sbjct: 33531 agccaaagggtgggttggtt 33512
>gb|AC159011.2| Gallus gallus BAC clone CH261-107A24 from chromosome unknown, complete sequence Length = 249034 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 agccaaagggtgggttggtt 418 |||||||||||||||||||| Sbjct: 203657 agccaaagggtgggttggtt 203638
>emb|AL606962.22| Mouse DNA sequence from clone RP23-29H22 on chromosome 4, complete sequence Length = 223854 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 ccaccgccgcgccccctgcccctc 125 |||||||| ||||||||||||||| Sbjct: 17977 ccaccgccccgccccctgcccctc 18000
>dbj|AP000348.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone N27C7 Length = 39617 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 ccccctgcccctcccttcccctcc 136 ||||||||||||||| |||||||| Sbjct: 25567 ccccctgcccctcccctcccctcc 25590 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,320,555 Number of Sequences: 3902068 Number of extensions: 3320555 Number of successful extensions: 82526 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81515 Number of HSP's gapped (non-prelim): 1011 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
