ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BC025467.1| Mus musculus AE binding protein 2, mRNA (cDNA clo... 46 0.087
2gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosom... 46 0.087
3gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 46 0.087
4ref|NM_001005605.1| Mus musculus AE binding protein 2 (Aebp2), t... 46 0.087
5gb|AE004849.1| Pseudomonas aeruginosa PAO1, section 410 of 529 o... 46 0.087
6ref|XM_476112.1| Oryza sativa (japonica cultivar-group), predic... 44 0.35
7gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 44 0.35
8gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.35
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
10dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.35
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.35
12dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.35
13dbj|AK110599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
14dbj|AK110596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.35
15ref|XM_483075.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
16ref|NM_186067.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
17ref|NM_185761.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.4
18gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.4
19gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 42 1.4
20gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 1.4
21gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 1.4
22gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 42 1.4
23emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.4
24emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 42 1.4
25emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 42 1.4
26emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 1.4
27emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T pl... 42 1.4
28dbj|AB212624.1| Streptomyces sp. KO-3988 furaquinocin A biosynth... 42 1.4
29gb|CP000249.1| Frankia sp. CcI3, complete genome 42 1.4
30gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 42 1.4
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
33dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
34dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
35dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
36dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
37dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
38dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
39dbj|AK102353.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
40gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 1.4
41gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.4
42gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.4
43gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
44gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, co... 40 5.4
45gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.4
46gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 5.4
47gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.4
48ref|XM_848999.1| PREDICTED: Canis familiaris similar to RIC3 pro... 40 5.4
49ref|XM_743108.1| Aspergillus fumigatus Af293 hypothetical protei... 40 5.4
50gb|AY162971.1| Micromonospora chersina dynemicin enediyne iterat... 40 5.4
51emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 5.4
52emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 40 5.4
53emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 40 5.4
54emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete ... 40 5.4
55emb|AJ632203.2| Streptomyces antibioticus oviedomycin biosynthet... 40 5.4
56emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 m... 40 5.4
57emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macroph... 40 5.4
58gb|AE005999.1| Caulobacter crescentus CB15 section 325 of 359 of... 40 5.4
59gb|AC152174.15| Gasterosteus aculeatus clone ch213-202d23, compl... 40 5.4
60gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 gen... 40 5.4
61dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.4
62dbj|AB041960.1| TT virus DNA, complete genome, isolate:So-TTV2 40 5.4
63gb|AF394943.1|AF394943 Nocardia brasiliensis rifampin glycosyltr... 40 5.4
64gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.4
65dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
66dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
67gb|AE004800.1| Pseudomonas aeruginosa PAO1, section 361 of 529 o... 40 5.4
68gb|AF546156.1| Micromonospora chersinia UnbL (unbL), UnbV (unbV)... 40 5.4
69gb|AF218415.1|AF218415 Bradyrhizobium sp. ORS278 geranylgeranyl ... 40 5.4
70gb|AF151965.1|AF151965 Pseudomonas putida strain KT2440 proline ... 40 5.4
71dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
72gb|AF153207.1|AF153207 Pseudomonas putida proline dehydrogenase ... 40 5.4
73dbj|AK102408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
74dbj|AK070291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
75dbj|AK067277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.4
76gb|AY109356.1| Zea mays CL604_1 mRNA sequence 40 5.4
77gb|AF054622.1|AF054622 Pseudomonas aeruginosa PhpA (phpA) and DN... 40 5.4
78gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.4
79dbj|AB085745.1| Streptomyces griseus orf1, orf2, sgmA, orf4 gene... 40 5.4
80gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4
81gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.4 
>gb|BC025467.1| Mus musculus AE binding protein 2, mRNA (cDNA clone IMAGE:5351959)
          Length = 3752

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 217 cgccatggccgccgcgctcgccg 239
           |||||||||||||||||||||||
Sbjct: 201 cgccatggccgccgcgctcgccg 223
to top
>gb|AC133098.7| Mus musculus BAC clone RP23-336L12 from chromosome 6, complete sequence
          Length = 182955

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 217   cgccatggccgccgcgctcgccg 239
             |||||||||||||||||||||||
Sbjct: 30404 cgccatggccgccgcgctcgccg 30426
to top
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 259    cccggccgccgccccggcggcga 281
              |||||||||||||||||||||||
Sbjct: 310702 cccggccgccgccccggcggcga 310680
to top
>ref|NM_001005605.1| Mus musculus AE binding protein 2 (Aebp2), transcript variant 1,
           mRNA
          Length = 6192

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 217 cgccatggccgccgcgctcgccg 239
           |||||||||||||||||||||||
Sbjct: 3   cgccatggccgccgcgctcgccg 25
to top
>gb|AE004849.1| Pseudomonas aeruginosa PAO1, section 410 of 529 of the complete
            genome
          Length = 10113

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 294  cggcgtggggcagcagcaggacg 316
            |||||||||||||||||||||||
Sbjct: 5962 cggcgtggggcagcagcaggacg 5984
to top
>ref|XM_476112.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 264 ccgccgccccggcggcgaccgtcgccgccgcggc 297
           |||||||| ||||||| |||| ||||||||||||
Sbjct: 380 ccgccgccgcggcggccaccgccgccgccgcggc 347
to top
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 264    ccgccgccccggcggcgaccgtcgcc 289
              |||||| |||||||||||||||||||
Sbjct: 145728 ccgccgacccggcggcgaccgtcgcc 145753
to top
>gb|AC130732.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0708D12,
             complete sequence
          Length = 172647

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 264   ccgccgccccggcggcgaccgtcgccgccgcggc 297
             |||||||| ||||||| |||| ||||||||||||
Sbjct: 41355 ccgccgccgcggcggccaccgccgccgccgcggc 41388
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                 
Query: 264     ccgccgccccggcggcgaccgtcgccgccgcggc 297
               |||||||| ||||||| |||| ||||||||||||
Sbjct: 6211000 ccgccgccgcggcggccaccgccgccgccgcggc 6211033



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 221      atggccgccgcgctcgccgc 240
                ||||||||||||||||||||
Sbjct: 20395487 atggccgccgcgctcgccgc 20395468



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     catggccgccgcgctcgccg 239
               ||||||||||||||||||||
Sbjct: 4813244 catggccgccgcgctcgccg 4813263
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 216     gcgccatggccgccgcgctcgc 237
               ||||||||||||||||||||||
Sbjct: 7432000 gcgccatggccgccgcgctcgc 7431979
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 217     cgccatggccgccgcgctcgccgcgg 242
               |||| |||||||||||||||||||||
Sbjct: 3521119 cgccctggccgccgcgctcgccgcgg 3521094



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 222     tggccgccgcgctcgccgcgg 242
               |||||||||||||||||||||
Sbjct: 2875197 tggccgccgcgctcgccgcgg 2875177



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 222     tggccgccgcgctcgccgcgg 242
               |||||||||||||||||||||
Sbjct: 2770455 tggccgccgcgctcgccgcgg 2770435



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 260     ccggccgccgccccggcggc 279
               ||||||||||||||||||||
Sbjct: 3547224 ccggccgccgccccggcggc 3547205



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 275     gcggcgaccgtcgccgccgcggcg 298
               ||||||| ||||||||||||||||
Sbjct: 2597940 gcggcgaacgtcgccgccgcggcg 2597917



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    ggccgccgcgctcgccgcgg 242
              ||||||||||||||||||||
Sbjct: 675713 ggccgccgcgctcgccgcgg 675732
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 215     ggcgccatggccgccgcgctcgccgc 240
               ||||||| ||||||||||||||||||
Sbjct: 1314991 ggcgccaaggccgccgcgctcgccgc 1315016



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 222     tggccgccgcgctcgccgcgg 242
               |||||||||||||||||||||
Sbjct: 3497493 tggccgccgcgctcgccgcgg 3497513
to top
>dbj|AK110599.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-G03, full
           insert sequence
          Length = 853

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 264 ccgccgccccggcggcgaccgtcgccgccgcggc 297
           |||||||| ||||||| |||| ||||||||||||
Sbjct: 71  ccgccgccgcggcggccaccgccgccgccgcggc 104
to top
>dbj|AK110596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F12, full
           insert sequence
          Length = 1272

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 264 ccgccgccccggcggcgaccgtcgccgccgcggc 297
           |||||||| ||||||| |||| ||||||||||||
Sbjct: 564 ccgccgccgcggcggccaccgccgccgccgcggc 531
to top
>ref|XM_483075.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1392

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 218  gccatggccgccgcgctcgccgcgg 242
            |||| ||||||||||||||||||||
Sbjct: 1267 gccaaggccgccgcgctcgccgcgg 1291
to top
>ref|NM_186067.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 921

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 216 gcgccatggccgccgcgctcgccgcggac 244
           ||||||||||||||| ||||| |||||||
Sbjct: 236 gcgccatggccgccgagctcggcgcggac 264
to top
>ref|NM_185761.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1368

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 212 ccgggcgccatggccgccgcgctcgccgc 240
           ||||||||||| | |||||||||||||||
Sbjct: 205 ccgggcgccatcgacgccgcgctcgccgc 233
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    tggccgccgcgctcgccgcgg 242
              |||||||||||||||||||||
Sbjct: 737887 tggccgccgcgctcgccgcgg 737907
to top
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 261     cggccgccgccccggcggcgaccgtcgcc 289
               |||||||||||| ||||||| ||||||||
Sbjct: 2571606 cggccgccgccctggcggcgtccgtcgcc 2571578
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 275     gcggcgaccgtcgccgccgcg 295
               |||||||||||||||||||||
Sbjct: 2166867 gcggcgaccgtcgccgccgcg 2166847
to top
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 259     cccggccgccgccccggcggc 279
               |||||||||||||||||||||
Sbjct: 3114024 cccggccgccgccccggcggc 3114044
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 272     ccggcggcgaccgtcgccgcc 292
               |||||||||||||||||||||
Sbjct: 3932132 ccggcggcgaccgtcgccgcc 3932112
to top
>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    cccggccgccgccccggcggc 279
              |||||||||||||||||||||
Sbjct: 218482 cccggccgccgccccggcggc 218502
to top
>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    cccggccgccgccccggcggc 279
              |||||||||||||||||||||
Sbjct: 234517 cccggccgccgccccggcggc 234537
to top
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 259    cccggccgccgccccggcggc 279
              |||||||||||||||||||||
Sbjct: 140630 cccggccgccgccccggcggc 140610
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 222     tggccgccgcgctcgccgcgg 242
               |||||||||||||||||||||
Sbjct: 1163683 tggccgccgcgctcgccgcgg 1163703



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    ggccgccgcgctcgccgcgg 242
              ||||||||||||||||||||
Sbjct: 528220 ggccgccgcgctcgccgcgg 528201
to top
>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome
          Length = 101016

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 288   ccgccgcggcgtggggcagcagcag 312
             |||||||||||| ||||||||||||
Sbjct: 93050 ccgccgcggcgtcgggcagcagcag 93074
to top
>dbj|AB212624.1| Streptomyces sp. KO-3988 furaquinocin A biosynthetic gene cluster,
             complete cds
          Length = 27448

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 260   ccggccgccgccccggcggcgaccg 284
             ||||||||||||||||| |||||||
Sbjct: 27181 ccggccgccgccccggccgcgaccg 27205
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 223     ggccgccgcgctcgccgcggacctc 247
               |||||||| ||||||||||||||||
Sbjct: 1390101 ggccgccgtgctcgccgcggacctc 1390125



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 224     gccgccgcgctcgccgcgga 243
               ||||||||||||||||||||
Sbjct: 5226162 gccgccgcgctcgccgcgga 5226181



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 363    gacgtggacggctcgccccggtgaccgggacg 394
              |||| |||||||||||| ||||||||| ||||
Sbjct: 392992 gacggggacggctcgccacggtgaccgcgacg 393023
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     gcggcgaccgtcgccgccgcg 295
               |||||||||||||||||||||
Sbjct: 1996200 gcggcgaccgtcgccgccgcg 1996220
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 218      gccatggccgccgcgctcgccgcgg 242
                |||| ||||||||||||||||||||
Sbjct: 24160670 gccaaggccgccgcgctcgccgcgg 24160646
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 216      gcgccatggccgccgcgctcgccgcggac 244
                ||||||||||||||| ||||| |||||||
Sbjct: 28004605 gcgccatggccgccgagctcggcgcggac 28004633



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 212      ccgggcgccatggccgccgcgctcgccgc 240
                ||||||||||| | |||||||||||||||
Sbjct: 21783619 ccgggcgccatcgacgccgcgctcgccgc 21783647
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 224      gccgccgcgctcgccgcggac 244
                |||||||||||||||||||||
Sbjct: 28566610 gccgccgcgctcgccgcggac 28566590
to top
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0534A03
          Length = 153170

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 212    ccgggcgccatggccgccgcgctcgccgc 240
              ||||||||||| | |||||||||||||||
Sbjct: 100802 ccgggcgccatcgacgccgcgctcgccgc 100830
to top
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1343_D04
          Length = 143407

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 216   gcgccatggccgccgcgctcgccgcggac 244
             ||||||||||||||| ||||| |||||||
Sbjct: 93939 gcgccatggccgccgagctcggcgcggac 93967
to top
>dbj|AP003770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0550B04
          Length = 150131

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   gccgccgcgctcgccgcggac 244
             |||||||||||||||||||||
Sbjct: 58088 gccgccgcgctcgccgcggac 58068
to top
>dbj|AP004620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0605H02
          Length = 175547

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 218   gccatggccgccgcgctcgccgcgg 242
             |||| ||||||||||||||||||||
Sbjct: 27009 gccaaggccgccgcgctcgccgcgg 26985
to top
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0028A08
          Length = 150818

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 218    gccatggccgccgcgctcgccgcgg 242
              |||| ||||||||||||||||||||
Sbjct: 114156 gccaaggccgccgcgctcgccgcgg 114132
to top
>dbj|AK102353.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091F07, full
           insert sequence
          Length = 1613

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 224 gccgccgcgctcgccgcggac 244
           |||||||||||||||||||||
Sbjct: 256 gccgccgcgctcgccgcggac 276
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 223     ggccgccgcgctcgccgcgga 243
               |||||||||||||||||||||
Sbjct: 1382155 ggccgccgcgctcgccgcgga 1382135
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 275     gcggcgaccgtcgccgccgcg 295
               |||||||||||||||||||||
Sbjct: 1547767 gcggcgaccgtcgccgccgcg 1547787



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    cggccgccgccccggcggcg 280
              ||||||||||||||||||||
Sbjct: 186624 cggccgccgccccggcggcg 186605
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    ggccgccgcgctcgccgcgg 242
              ||||||||||||||||||||
Sbjct: 542327 ggccgccgcgctcgccgcgg 542346
to top
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01,
             complete sequence
          Length = 173074

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   atggccgccgcgctcgccgc 240
             ||||||||||||||||||||
Sbjct: 67232 atggccgccgcgctcgccgc 67213
to top
>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence
          Length = 268984

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    ccccggcggcgaccgtcgccgccg 293
              ||||||||||||||||||| ||||
Sbjct: 216212 ccccggcggcgaccgtcgcagccg 216235
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 217     cgccatggccgccgcgctcgccgc 240
               |||| |||||||||||||||||||
Sbjct: 1442174 cgccctggccgccgcgctcgccgc 1442197
to top
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     gccggtgacagcgcccgccg 56
              ||||||||||||||||||||
Sbjct: 953935 gccggtgacagcgcccgccg 953916
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    ggccgccgcgctcgccgcgg 242
              ||||||||||||||||||||
Sbjct: 719575 ggccgccgcgctcgccgcgg 719556
to top
>ref|XM_848999.1| PREDICTED: Canis familiaris similar to RIC3 protein (LOC611343),
           mRNA
          Length = 1163

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 217 cgccatggccgccgcgctcgccgc 240
           ||||||||||||||| ||||||||
Sbjct: 29  cgccatggccgccgccctcgccgc 6
to top
>ref|XM_743108.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g01410)
           partial mRNA
          Length = 1704

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  ctttttataccaccatccat 94
           ||||||||||||||||||||
Sbjct: 471 ctttttataccaccatccat 452
to top
>gb|AY162971.1| Micromonospora chersina dynemicin enediyne iterative type I
            polyketide synthase gene locus, partial sequence
          Length = 6653

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 218  gccatggccgccgcgctcgccgcg 241
            |||||| |||||||||||||||||
Sbjct: 3324 gccatgcccgccgcgctcgccgcg 3301
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 228     ccgcgctcgccgcggacctc 247
               ||||||||||||||||||||
Sbjct: 2279351 ccgcgctcgccgcggacctc 2279370
to top
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    ccggcggcgaccgtcgccgc 291
              ||||||||||||||||||||
Sbjct: 262223 ccggcggcgaccgtcgccgc 262204
to top
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 288   ccgccgcggcgtggggcagcagcaggacggcgaagg 323
             ||||||||||| ||||||||||| ||  ||||||||
Sbjct: 45072 ccgccgcggcgaggggcagcagcgggcgggcgaagg 45107
to top
>emb|AL939104.1|SCO939104 Streptomyces coelicolor A3(2) complete genome; segment 1/29
          Length = 299050

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    cgccatggccgccgcgctcg 236
              ||||||||||||||||||||
Sbjct: 203145 cgccatggccgccgcgctcg 203126
to top
>emb|AJ632203.2| Streptomyces antibioticus oviedomycin biosynthetic gene cluster, strain
             ATCC 11891
          Length = 24720

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 381   cggtgaccgggacgccgcgg 400
             ||||||||||||||||||||
Sbjct: 11990 cggtgaccgggacgccgcgg 11971
to top
>emb|AL954258.2| Pan troglodytes chromosome 22 clone PTB-146D01 map 22q22.3, complete
              sequence
          Length = 185080

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 295    ggcgtggggcagcagcaggacggc 318
              ||||||||| ||||||||||||||
Sbjct: 153362 ggcgtgggggagcagcaggacggc 153385
to top
>emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macrophage colony-stimulating
             factor and IL3 gene for interleukin-3, BAC bCHORI92M14
             clone, contig 1
          Length = 54760

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ccgtccgtccgtccactcca 73
             ||||||||||||||||||||
Sbjct: 16844 ccgtccgtccgtccactcca 16863
to top
>gb|AE005999.1| Caulobacter crescentus CB15 section 325 of 359 of the complete genome
          Length = 12079

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 217  cgccatggccgccgcgctcgccgc 240
            ||||||||||| ||||||||||||
Sbjct: 5516 cgccatggccgacgcgctcgccgc 5493
to top
>gb|AC152174.15| Gasterosteus aculeatus clone ch213-202d23, complete sequence
          Length = 174464

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    cgccgtccgtccgtccactc 71
             ||||||||||||||||||||
Sbjct: 66426 cgccgtccgtccgtccactc 66445
to top
>gb|AC068924.11| Oryza sativa chromosome 10 BAC OSJNBa0026L12 genomic sequence, complete
             sequence
          Length = 152172

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   cgccatggccgccgcgctcgccgc 240
             |||||||||||||||| |||||||
Sbjct: 53140 cgccatggccgccgcggtcgccgc 53163
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 262     ggccgccgccccggcggcga 281
               ||||||||||||||||||||
Sbjct: 1447775 ggccgccgccccggcggcga 1447756
to top
>dbj|AB041960.1| TT virus DNA, complete genome, isolate:So-TTV2
          Length = 3371

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 atggccgccgcgctcgccgc 240
           ||||||||||||||||||||
Sbjct: 831 atggccgccgcgctcgccgc 850
to top
>gb|AF394943.1|AF394943 Nocardia brasiliensis rifampin glycosyltransferase (rgt) and
           putative oxygenase genes, complete cds
          Length = 1822

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 cccggccgccgccccggcgg 278
           ||||||||||||||||||||
Sbjct: 449 cccggccgccgccccggcgg 430
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 262     ggccgccgccccggcggcga 281
               ||||||||||||||||||||
Sbjct: 2534786 ggccgccgccccggcggcga 2534805
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 217      cgccatggccgccgcgctcgccgc 240
                |||||||||||||||| |||||||
Sbjct: 19323241 cgccatggccgccgcggtcgccgc 19323218
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 271      cccggcggcgaccgtcgccgccgcggcg 298
                |||| ||||||||| |||||||||||||
Sbjct: 18326485 cccgccggcgaccgccgccgccgcggcg 18326458
to top
>gb|AE004800.1| Pseudomonas aeruginosa PAO1, section 361 of 529 of the complete
            genome
          Length = 14373

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  ccgccccggcggcgaccgtc 286
            ||||||||||||||||||||
Sbjct: 7244 ccgccccggcggcgaccgtc 7263
to top
>gb|AF546156.1| Micromonospora chersinia UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE
            (pksE), and TebC (tebC) genes, complete cds
          Length = 10136

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 218  gccatggccgccgcgctcgccgcg 241
            |||||| |||||||||||||||||
Sbjct: 6555 gccatgcccgccgcgctcgccgcg 6532
to top
>gb|AF218415.1|AF218415 Bradyrhizobium sp. ORS278 geranylgeranyl synthase (crtE), lycopene
           cyclase (crtY), phytoene desaturase (crtI), phytoene
           synthase (crtB), and beta-carotene ketolase (crtW)
           genes, complete cds
          Length = 6635

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 272 ccggcggcgaccgtcgccgccgcg 295
           ||||| ||||||||||||||||||
Sbjct: 896 ccggctgcgaccgtcgccgccgcg 919
to top
>gb|AF151965.1|AF151965 Pseudomonas putida strain KT2440 proline dehydrogenase (putA) gene,
            complete cds
          Length = 5162

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  cagcagcaggacggcgaagg 323
            ||||||||||||||||||||
Sbjct: 3704 cagcagcaggacggcgaagg 3723
to top
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463G11
          Length = 154188

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 271   cccggcggcgaccgtcgccgccgcggcg 298
             |||| ||||||||| |||||||||||||
Sbjct: 41221 cccgccggcgaccgccgccgccgcggcg 41194
to top
>gb|AF153207.1|AF153207 Pseudomonas putida proline dehydrogenase (putA) and proline permease
            (putP) genes, complete cds
          Length = 8660

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  cagcagcaggacggcgaagg 323
            ||||||||||||||||||||
Sbjct: 1459 cagcagcaggacggcgaagg 1440
to top
>dbj|AK102408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092M06, full
           insert sequence
          Length = 1687

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 271 cccggcggcgaccgtcgccgccgcggcg 298
           |||| ||||||||| |||||||||||||
Sbjct: 98  cccgccggcgaccgccgccgccgcggcg 71
to top
>dbj|AK070291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052I10, full
           insert sequence
          Length = 1849

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 217 cgccatggccgccgcgctcgccgc 240
           |||||||||||||||| |||||||
Sbjct: 51  cgccatggccgccgcggtcgccgc 74
to top
>dbj|AK067277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K07, full
           insert sequence
          Length = 1626

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 221 atggccgccgcgctcgccgc 240
           ||||||||||||||||||||
Sbjct: 69  atggccgccgcgctcgccgc 88
to top
>gb|AY109356.1| Zea mays CL604_1 mRNA sequence
          Length = 1502

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  cgccatggccgccgcgctcg 236
            ||||||||||||||||||||
Sbjct: 1357 cgccatggccgccgcgctcg 1338
to top
>gb|AF054622.1|AF054622 Pseudomonas aeruginosa PhpA (phpA) and DNA polymerase holoenzyme
           chi subunit (holC) genes, complete cds
          Length = 2278

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 267 ccgccccggcggcgaccgtc 286
           ||||||||||||||||||||
Sbjct: 251 ccgccccggcggcgaccgtc 270
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 304     cagcagcaggacggcgaagg 323
               ||||||||||||||||||||
Sbjct: 5633817 cagcagcaggacggcgaagg 5633836



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     ggcaccgggcgccatggccg 227
               ||||||||||||||||||||
Sbjct: 3177335 ggcaccgggcgccatggccg 3177354
to top
>dbj|AB085745.1| Streptomyces griseus orf1, orf2, sgmA, orf4 genes for putative
            mono-oxygenase, hypothetical protein,
            metalloendopeptidase, possible secreted protein, partial
            and complete cds
          Length = 5194

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  cccggccgccgccccggcgg 278
            ||||||||||||||||||||
Sbjct: 5072 cccggccgccgccccggcgg 5053
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 217      cgccatggccgccgcgctcgccgc 240
                |||||||||||||||| |||||||
Sbjct: 19334517 cgccatggccgccgcggtcgccgc 19334494
to top
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   catggccgccgcgctcgccg 239
             ||||||||||||||||||||
Sbjct: 85652 catggccgccgcgctcgccg 85671


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,938,723
Number of Sequences: 3902068
Number of extensions: 2938723
Number of successful extensions: 99440
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92491
Number of HSP's gapped (non-prelim): 6949
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top