>RPOB_PHOPR (Q6LLW2) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1341

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 160  TRQDLDLASAWSDPPHTLTKPSRCGDPMSAAVEEQMVVKAIREECPWESLPK 315
            TRQD+D+A+   D  HTL +  R G P++  V +     +I+E      LP+
Sbjct: 1154 TRQDVDIAALSDDQVHTLVQNLRDGLPIATPVFDGAPESSIKELLKLGDLPE 1205

>SYV_CLOPE (Q8XJ42) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 880

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
 Frame = +1

Query: 205 HTLTKPSRCGDPMSAAVEEQMVVKAIREECP---------WESLPKRLQSTLHNKDKWHR 357
           H +    RCG  +   + +Q  VK      P          + +P+R + T  N   W  
Sbjct: 342 HNVGTHDRCGTVVEPIISKQWYVKMQSLADPAIEVVRNKGTKFVPERFEKTYFN---WME 398

Query: 358 RIVDYCIRKRLQW 396
            I D+CI ++L W
Sbjct: 399 NIQDWCISRQLWW 411

>SYV_HELHP (Q7VHN2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 899

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
 Frame = +1

Query: 196 DPPHTLTKPSRCGDPMSAAVEEQMVVKAIREECPWESLPKRLQSTLH--------NKDKW 351
           D  + + K  RCG+ +   + +Q  VK   +E    ++ +     LH        N + W
Sbjct: 349 DYTNQVGKCYRCGNIVEPYISKQWFVK---KETAHNAIQRVNNGELHFYPAQWLNNYNAW 405

Query: 352 HRRIVDYCIRKRLQW 396
            R + D+CI ++L W
Sbjct: 406 MRELKDWCISRQLWW 420

>SYV_MANSM (Q65S97) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 954

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
 Frame = +1

Query: 202 PHTLTKP--SRCGDPMSAAVEEQMVVK-------AIR--EECPWESLPKRLQSTLHNKDK 348
           PH L  P   R G P+   + +Q  V        AI+  EE   + +PK+ ++  ++   
Sbjct: 365 PHDLKVPYGDRGGVPIEPMLTDQWYVSVKPLAETAIKAVEEGEIQFVPKQYENLYYS--- 421

Query: 349 WHRRIVDYCIRKRLQW 396
           W R I D+CI ++L W
Sbjct: 422 WMRDIQDWCISRQLWW 437

>PLXB1_MOUSE (Q8CJH3) Plexin-B1 precursor|
          Length = 2119

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
 Frame = +3

Query: 6   SRLRLWFSWTG--------EEASSLHGPPTTPHPQHSDASPREAHTGLGIASS----LAP 149
           SRL LW  W G           S LH  P  P P     +   A TGLG +++    LA 
Sbjct: 729 SRLSLWGPWAGPGPILSPTSTESPLHEKPLPPDPPTIPGTTVPAPTGLGPSTTPEDLLAS 788

Query: 150 FP 155
           +P
Sbjct: 789 YP 790

>YAAX_ECOLI (P75616) Hypothetical protein yaaX precursor|
          Length = 98

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 24  FSWTGEEASSLHGPPTTPHPQHSDASPREAHTGLG 128
           + W G     LHGPP  P P+H   +P + H G G
Sbjct: 61  YEWRGNRWH-LHGPP--PPPRHHKKAPHDHHGGHG 92

>CNTFR_HUMAN (P26992) Ciliary neurotrophic factor receptor alpha precursor|
           (CNTFR alpha)
          Length = 372

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +3

Query: 21  WFSWTGEEASSLHGPPTTPHPQHSDASPREAHTGLGIASSLAPFP 155
           W  W+     + H  P T  P+H     + A T     SSLAP P
Sbjct: 290 WSDWS----VAAHATPWTEEPRHLTTEAQAAETTTSTTSSLAPPP 330


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,405,472
Number of Sequences: 219361
Number of extensions: 1431039
Number of successful extensions: 4798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4796
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)