ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476410.1| Oryza sativa (japonica cultivar-group), mRNA 420 e-114
2dbj|AK105098.1| Oryza sativa (japonica cultivar-group) cDNA clon... 420 e-114
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
4dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
5dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic D... 178 1e-41
6gb|AC154547.3| Mus musculus BAC clone RP23-433L1 from chromosome... 46 0.10
7gb|AY175871.1| Laupala hapapa isolate 122 16S ribosomal RNA gene... 46 0.10
8ref|XM_581647.2| PREDICTED: Bos taurus similar to splicing facto... 44 0.41
9emb|AL356500.14| Human DNA sequence from clone RP11-307G7 on chr... 44 0.41
10ref|XM_451653.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B02717g ... 42 1.6
11emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 1.6
12emb|AL355930.2|NCB2O8 Neurospora crassa DNA linkage group II BAC... 42 1.6
13ref|XM_687432.1| PREDICTED: Danio rerio similar to unc-13 homolo... 42 1.6
14gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 42 1.6
15ref|XM_481632.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
16ref|NM_001003382.1| Canis familiaris platelet-derived growth fac... 40 6.4
17ref|NM_186421.2| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
18ref|XM_507352.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.4
19ref|XM_506173.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.4
20gb|AY022674.1| Oryza sativa microsatellite MRG4999 containing (C... 40 6.4
21gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
22ref|XM_658835.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.4
23ref|XM_455059.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E24618g ... 40 6.4
24gb|AY532634.1| Canis familiaris platelet-derived growth factor r... 40 6.4
25emb|CR388384.13| Zebrafish DNA sequence from clone DKEY-22O22 in... 40 6.4
26gb|AC098740.3| Mus musculus BAC clone RP23-122H3 from 3, complet... 40 6.4
27ref|XM_662268.1| Cryptosporidium hominis TU502 hypothetical prot... 40 6.4
28gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.4
29gb|AY158343.1| Aspergillus nidulans p150 dynactin NUDM (nudM) ge... 40 6.4
30emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 6.4
31emb|AL162755.2|NMA4Z2491 Neisseria meningitidis serogroup A stra... 40 6.4
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
33dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
34dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
35dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
36dbj|AK106142.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
37dbj|AK106008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
38dbj|AK065219.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
39emb|CR933839.10| Zebrafish DNA sequence from clone DKEY-244A7 in... 40 6.4
40gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, comple... 40 6.4
41dbj|AK061530.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
42emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in ... 40 6.4
43dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
44gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.4
45gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.4
46gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
47emb|AL663041.6| Mouse DNA sequence from clone RP23-342H16 on chr... 40 6.4
48emb|AL671914.9| Mouse DNA sequence from clone RP23-1A3 on chromo... 40 6.4 
>ref|XM_476410.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3390

 Score =  420 bits (212), Expect = e-114
 Identities = 340/382 (89%), Gaps = 3/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 94  cgcaactggtccaaggccatacgcctcctcgactccatcctcgcccgctccccctcctcc 153
           |||||||||||||||||||| ||| |||||||| |   ||||||||||||||| ||||||
Sbjct: 135 cgcaactggtccaaggccatccgcatcctcgacgcgcacctcgcccgctccccgtcctcc 194

                                                                       
Query: 154 atccacgacctctgcaaccgggccttctgctacttccagctcgagctccacaagcacgtc 213
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 195 atccacgacctctgcaaccgggccttctgctactcccagctcgagctccacaagcacgtc 254

                                                                       
Query: 214 gtcaaggactgcgaccgcgcgctgcagctcgaccccgcgcttctccaggcctatgtcctc 273
           |||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| || |||
Sbjct: 255 gtcaaggattgcgaccgcgcgctggagctggacccggcgctgctccaggcctacgtgctc 314

                                                                       
Query: 274 aaaggcaaggcactgtgcgcattgggaaaaaatgaggaagctttggttgcttgggagcaa 333
           |||||||||||| |||  ||||| || ||||  ||||||||||||| || ||||||||||
Sbjct: 315 aaaggcaaggcattgtctgcattagggaaaagagaggaagctttggctgtttgggagcaa 374

                                                                       
Query: 334 ggacatgagattgctgtccgtgacacaattgacctgaaacagttgctggaattggaagaa 393
           ||||||||| ||||||| ||||| ||||| ||||||||||| ||||| || |||||||||
Sbjct: 375 ggacatgaggttgctgttcgtgatacaatggacctgaaacaattgcttgagttggaagaa 434

                                                                       
Query: 394 ttagtttcttctgttaaaatttatgagacggttgagtgtgaagac---gttgtggatgca 450
           || ||||| ||||||||||| | ||||||| | ||||||||||||   || |||||||||
Sbjct: 435 ttggtttcctctgttaaaatctgtgagacgatcgagtgtgaagaccgtgtcgtggatgca 494

                                 
Query: 451 tcaccatgtgataccaaggttg 472
           ||||||||||||||||| ||||
Sbjct: 495 tcaccatgtgataccaaagttg 516
to top
>dbj|AK105098.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C04, full
           insert sequence
          Length = 3390

 Score =  420 bits (212), Expect = e-114
 Identities = 340/382 (89%), Gaps = 3/382 (0%)
 Strand = Plus / Plus

                                                                       
Query: 94  cgcaactggtccaaggccatacgcctcctcgactccatcctcgcccgctccccctcctcc 153
           |||||||||||||||||||| ||| |||||||| |   ||||||||||||||| ||||||
Sbjct: 135 cgcaactggtccaaggccatccgcatcctcgacgcgcacctcgcccgctccccgtcctcc 194

                                                                       
Query: 154 atccacgacctctgcaaccgggccttctgctacttccagctcgagctccacaagcacgtc 213
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 195 atccacgacctctgcaaccgggccttctgctactcccagctcgagctccacaagcacgtc 254

                                                                       
Query: 214 gtcaaggactgcgaccgcgcgctgcagctcgaccccgcgcttctccaggcctatgtcctc 273
           |||||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| || |||
Sbjct: 255 gtcaaggattgcgaccgcgcgctggagctggacccggcgctgctccaggcctacgtgctc 314

                                                                       
Query: 274 aaaggcaaggcactgtgcgcattgggaaaaaatgaggaagctttggttgcttgggagcaa 333
           |||||||||||| |||  ||||| || ||||  ||||||||||||| || ||||||||||
Sbjct: 315 aaaggcaaggcattgtctgcattagggaaaagagaggaagctttggctgtttgggagcaa 374

                                                                       
Query: 334 ggacatgagattgctgtccgtgacacaattgacctgaaacagttgctggaattggaagaa 393
           ||||||||| ||||||| ||||| ||||| ||||||||||| ||||| || |||||||||
Sbjct: 375 ggacatgaggttgctgttcgtgatacaatggacctgaaacaattgcttgagttggaagaa 434

                                                                       
Query: 394 ttagtttcttctgttaaaatttatgagacggttgagtgtgaagac---gttgtggatgca 450
           || ||||| ||||||||||| | ||||||| | ||||||||||||   || |||||||||
Sbjct: 435 ttggtttcctctgttaaaatctgtgagacgatcgagtgtgaagaccgtgtcgtggatgca 494

                                 
Query: 451 tcaccatgtgataccaaggttg 472
           ||||||||||||||||| ||||
Sbjct: 495 tcaccatgtgataccaaagttg 516
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score =  178 bits (90), Expect = 1e-41
 Identities = 173/200 (86%), Gaps = 3/200 (1%)
 Strand = Plus / Minus

                                                                          
Query: 276    aggcaaggcactgtgcgcattgggaaaaaatgaggaagctttggttgcttgggagcaagg 335
              |||||||||| |||  ||||| || ||||  ||||||||||||| || ||||||||||||
Sbjct: 760513 aggcaaggcattgtctgcattagggaaaagagaggaagctttggctgtttgggagcaagg 760454

                                                                          
Query: 336    acatgagattgctgtccgtgacacaattgacctgaaacagttgctggaattggaagaatt 395
              ||||||| ||||||| ||||| ||||| ||||||||||| ||||| || |||||||||||
Sbjct: 760453 acatgaggttgctgttcgtgatacaatggacctgaaacaattgcttgagttggaagaatt 760394

                                                                          
Query: 396    agtttcttctgttaaaatttatgagacggttgagtgtgaagac---gttgtggatgcatc 452
               ||||| ||||||||||| | ||||||| | ||||||||||||   || |||||||||||
Sbjct: 760393 ggtttcctctgttaaaatctgtgagacgatcgagtgtgaagaccgtgtcgtggatgcatc 760334

                                  
Query: 453    accatgtgataccaaggttg 472
              ||||||||||||||| ||||
Sbjct: 760333 accatgtgataccaaagttg 760314



 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                          
Query: 167    gcaaccgggccttctgctacttccagctcgagctccacaagcacgtcgtcaaggactgcg 226
              ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 762066 gcaaccgggccttctgctactcccagctcgagctccacaagcacgtcgtcaaggattgcg 762007

                                                                  
Query: 227    accgcgcgctgcagctcgaccccgcgcttctccaggcctatgtcctcaaagg 278
              ||||||||||| |||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 762006 accgcgcgctggagctggacccggcgctgctccaggcctacgtgctcaaagg 761955



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                          
Query: 94     cgcaactggtccaaggccatacgcctcctcgactccatcctcgcccgctccccctcctcc 153
              |||||||||||||||||||| ||| |||||||| |   ||||||||||||||| ||||||
Sbjct: 762238 cgcaactggtccaaggccatccgcatcctcgacgcgcacctcgcccgctccccgtcctcc 762179

                            
Query: 154    atccacgacctctg 167
              ||||||||||||||
Sbjct: 762178 atccacgacctctg 762165



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 207     gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
               |||||||||| ||||||||  | |||||||||||||
Sbjct: 3375638 gcacgtcgtcgaggactgccgcggcgcgctgcagct 3375603
to top
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_G09
          Length = 115815

 Score =  178 bits (90), Expect = 1e-41
 Identities = 173/200 (86%), Gaps = 3/200 (1%)
 Strand = Plus / Minus

                                                                         
Query: 276   aggcaaggcactgtgcgcattgggaaaaaatgaggaagctttggttgcttgggagcaagg 335
             |||||||||| |||  ||||| || ||||  ||||||||||||| || ||||||||||||
Sbjct: 99044 aggcaaggcattgtctgcattagggaaaagagaggaagctttggctgtttgggagcaagg 98985

                                                                         
Query: 336   acatgagattgctgtccgtgacacaattgacctgaaacagttgctggaattggaagaatt 395
             ||||||| ||||||| ||||| ||||| ||||||||||| ||||| || |||||||||||
Sbjct: 98984 acatgaggttgctgttcgtgatacaatggacctgaaacaattgcttgagttggaagaatt 98925

                                                                         
Query: 396   agtttcttctgttaaaatttatgagacggttgagtgtgaagac---gttgtggatgcatc 452
              ||||| ||||||||||| | ||||||| | ||||||||||||   || |||||||||||
Sbjct: 98924 ggtttcctctgttaaaatctgtgagacgatcgagtgtgaagaccgtgtcgtggatgcatc 98865

                                 
Query: 453   accatgtgataccaaggttg 472
             ||||||||||||||| ||||
Sbjct: 98864 accatgtgataccaaagttg 98845



 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                          
Query: 167    gcaaccgggccttctgctacttccagctcgagctccacaagcacgtcgtcaaggactgcg 226
              ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 100597 gcaaccgggccttctgctactcccagctcgagctccacaagcacgtcgtcaaggattgcg 100538

                                                                  
Query: 227    accgcgcgctgcagctcgaccccgcgcttctccaggcctatgtcctcaaagg 278
              ||||||||||| |||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 100537 accgcgcgctggagctggacccggcgctgctccaggcctacgtgctcaaagg 100486



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                          
Query: 94     cgcaactggtccaaggccatacgcctcctcgactccatcctcgcccgctccccctcctcc 153
              |||||||||||||||||||| ||| |||||||| |   ||||||||||||||| ||||||
Sbjct: 100769 cgcaactggtccaaggccatccgcatcctcgacgcgcacctcgcccgctccccgtcctcc 100710

                            
Query: 154    atccacgacctctg 167
              ||||||||||||||
Sbjct: 100709 atccacgacctctg 100696
to top
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1513_F02
          Length = 126845

 Score =  178 bits (90), Expect = 1e-41
 Identities = 173/200 (86%), Gaps = 3/200 (1%)
 Strand = Plus / Minus

                                                                         
Query: 276   aggcaaggcactgtgcgcattgggaaaaaatgaggaagctttggttgcttgggagcaagg 335
             |||||||||| |||  ||||| || ||||  ||||||||||||| || ||||||||||||
Sbjct: 80320 aggcaaggcattgtctgcattagggaaaagagaggaagctttggctgtttgggagcaagg 80261

                                                                         
Query: 336   acatgagattgctgtccgtgacacaattgacctgaaacagttgctggaattggaagaatt 395
             ||||||| ||||||| ||||| ||||| ||||||||||| ||||| || |||||||||||
Sbjct: 80260 acatgaggttgctgttcgtgatacaatggacctgaaacaattgcttgagttggaagaatt 80201

                                                                         
Query: 396   agtttcttctgttaaaatttatgagacggttgagtgtgaagac---gttgtggatgcatc 452
              ||||| ||||||||||| | ||||||| | ||||||||||||   || |||||||||||
Sbjct: 80200 ggtttcctctgttaaaatctgtgagacgatcgagtgtgaagaccgtgtcgtggatgcatc 80141

                                 
Query: 453   accatgtgataccaaggttg 472
             ||||||||||||||| ||||
Sbjct: 80140 accatgtgataccaaagttg 80121



 Score =  159 bits (80), Expect = 1e-35
 Identities = 104/112 (92%)
 Strand = Plus / Minus

                                                                         
Query: 167   gcaaccgggccttctgctacttccagctcgagctccacaagcacgtcgtcaaggactgcg 226
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 81873 gcaaccgggccttctgctactcccagctcgagctccacaagcacgtcgtcaaggattgcg 81814

                                                                 
Query: 227   accgcgcgctgcagctcgaccccgcgcttctccaggcctatgtcctcaaagg 278
             ||||||||||| |||| ||||| ||||| ||||||||||| || ||||||||
Sbjct: 81813 accgcgcgctggagctggacccggcgctgctccaggcctacgtgctcaaagg 81762



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                         
Query: 94    cgcaactggtccaaggccatacgcctcctcgactccatcctcgcccgctccccctcctcc 153
             |||||||||||||||||||| ||| |||||||| |   ||||||||||||||| ||||||
Sbjct: 82045 cgcaactggtccaaggccatccgcatcctcgacgcgcacctcgcccgctccccgtcctcc 81986

                           
Query: 154   atccacgacctctg 167
             ||||||||||||||
Sbjct: 81985 atccacgacctctg 81972
to top
>gb|AC154547.3| Mus musculus BAC clone RP23-433L1 from chromosome 13, complete sequence
          Length = 211599

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 176   ccttctgctacttccagctcgag 198
             |||||||||||||||||||||||
Sbjct: 62037 ccttctgctacttccagctcgag 62015
to top
>gb|AY175871.1| Laupala hapapa isolate 122 16S ribosomal RNA gene, partial
           sequence; tRNA-Val, complete sequence; and 12S ribosomal
           RNA gene, partial sequence; mitochondrial genes for
           mitochondrial products
          Length = 509

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 395 tagtttcttctgttaaaatttat 417
           |||||||||||||||||||||||
Sbjct: 295 tagtttcttctgttaaaatttat 317
to top
>ref|XM_581647.2| PREDICTED: Bos taurus similar to splicing factor,
           arginine/serine-rich 2, interacting protein (LOC538632),
           partial mRNA
          Length = 4366

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 379 ctggaattggaagaattagttt 400
           ||||||||||||||||||||||
Sbjct: 737 ctggaattggaagaattagttt 758
to top
>emb|AL356500.14| Human DNA sequence from clone RP11-307G7 on chromosome 1, complete
             sequence
          Length = 41741

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 253   cttctccaggcctatgtcctca 274
             ||||||||||||||||||||||
Sbjct: 16143 cttctccaggcctatgtcctca 16164
to top
>ref|XM_451653.1| Kluyveromyces lactis NRRL Y-1140, KLLA0B02717g predicted mRNA
          Length = 6144

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 389  aagaattagtttcttctgtta 409
            |||||||||||||||||||||
Sbjct: 5275 aagaattagtttcttctgtta 5255
to top
>emb|CR382122.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome B of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1320834

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 389    aagaattagtttcttctgtta 409
              |||||||||||||||||||||
Sbjct: 245399 aagaattagtttcttctgtta 245379
to top
>emb|AL355930.2|NCB2O8 Neurospora crassa DNA linkage group II BAC clone B2O8
          Length = 162671

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 112    atacgcctcctcgactccatc 132
              |||||||||||||||||||||
Sbjct: 133427 atacgcctcctcgactccatc 133407
to top
>ref|XM_687432.1| PREDICTED: Danio rerio similar to unc-13 homolog D (LOC564076), mRNA
          Length = 4056

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 82   ctctgcagcggccgcaactggtcca 106
            |||||||||||| ||||||||||||
Sbjct: 2882 ctctgcagcggctgcaactggtcca 2858
to top
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 418     gagacggttgagtgtgaagacgttg 442
               ||||||||||||||||||| |||||
Sbjct: 1006749 gagacggttgagtgtgaagtcgttg 1006773
to top
>ref|XM_481632.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1990

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 42 cgccgccgccatgggctccg 61
          ||||||||||||||||||||
Sbjct: 75 cgccgccgccatgggctccg 94
to top
>ref|NM_001003382.1| Canis familiaris platelet-derived growth factor receptor, beta
           polypeptide (PDGFRB), mRNA
          Length = 3805

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 267 tgtcctcaaaggcaaggcactgtg 290
           ||||||||||||| ||||||||||
Sbjct: 80  tgtcctcaaaggccaggcactgtg 103
to top
>ref|NM_186421.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1199

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 207 gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
           |||||||||| ||||||||  | |||||||||||||
Sbjct: 102 gcacgtcgtcgaggactgccgcggcgcgctgcagct 137
to top
>ref|XM_507352.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.152
           mRNA
          Length = 1375

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 207 gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
           |||||||||| ||||||||  | |||||||||||||
Sbjct: 111 gcacgtcgtcgaggactgccgcggcgcgctgcagct 146
to top
>ref|XM_506173.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1714_H10.152
           mRNA
          Length = 1378

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 207 gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
           |||||||||| ||||||||  | |||||||||||||
Sbjct: 111 gcacgtcgtcgaggactgccgcggcgcgctgcagct 146
to top
>gb|AY022674.1| Oryza sativa microsatellite MRG4999 containing (CCG)X8, closest to
           marker R2466, genomic sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  cgccgccgccatgggctccg 61
           ||||||||||||||||||||
Sbjct: 117 cgccgccgccatgggctccg 136
to top
>gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0001I22, complete sequence
          Length = 162413

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    cgccgccgccatgggctccg 61
             ||||||||||||||||||||
Sbjct: 57776 cgccgccgccatgggctccg 57795
to top
>ref|XM_658835.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6323.2), mRNA
          Length = 3804

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  ctacttccagctcgagctcc 202
            ||||||||||||||||||||
Sbjct: 1033 ctacttccagctcgagctcc 1014
to top
>ref|XM_455059.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E24618g predicted mRNA
          Length = 2085

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 382 gaattggaagaattagtttcttct 405
           |||||||||||||| |||||||||
Sbjct: 913 gaattggaagaattggtttcttct 936
to top
>gb|AY532634.1| Canis familiaris platelet-derived growth factor receptor beta mRNA,
           complete cds
          Length = 3805

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 267 tgtcctcaaaggcaaggcactgtg 290
           ||||||||||||| ||||||||||
Sbjct: 80  tgtcctcaaaggccaggcactgtg 103
to top
>emb|CR388384.13| Zebrafish DNA sequence from clone DKEY-22O22 in linkage group 16,
             complete sequence
          Length = 123845

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 384   attggaagaattagtttcttctgt 407
             ||||||||| ||||||||||||||
Sbjct: 19616 attggaagagttagtttcttctgt 19639
to top
>gb|AC098740.3| Mus musculus BAC clone RP23-122H3 from 3, complete sequence
          Length = 219346

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 271    ctcaaaggcaaggcactgtg 290
              ||||||||||||||||||||
Sbjct: 146768 ctcaaaggcaaggcactgtg 146787
to top
>ref|XM_662268.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30090)
            partial mRNA
          Length = 4761

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 359  caattgacctgaaacagttg 378
            ||||||||||||||||||||
Sbjct: 2032 caattgacctgaaacagttg 2013
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     ctgcgaccgcgcgctgcagc 241
               ||||||||||||||||||||
Sbjct: 3642966 ctgcgaccgcgcgctgcagc 3642985
to top
>gb|AY158343.1| Aspergillus nidulans p150 dynactin NUDM (nudM) gene, complete cds
          Length = 4347

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 183  ctacttccagctcgagctcc 202
            ||||||||||||||||||||
Sbjct: 1301 ctacttccagctcgagctcc 1282
to top
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 382     gaattggaagaattagtttcttct 405
               |||||||||||||| |||||||||
Sbjct: 2184905 gaattggaagaattggtttcttct 2184928
to top
>emb|AL162755.2|NMA4Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              4/7
          Length = 331801

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    caattgacctgaaacagttg 378
              ||||||||||||||||||||
Sbjct: 213767 caattgacctgaaacagttg 213786
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 42       cgccgccgccatgggctccg 61
                ||||||||||||||||||||
Sbjct: 18180674 cgccgccgccatgggctccg 18180655
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 42       cgccgccgccatgggctccg 61
                ||||||||||||||||||||
Sbjct: 14349811 cgccgccgccatgggctccg 14349830
to top
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0428D12
          Length = 141678

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 207   gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
             |||||||||| ||||||||  | |||||||||||||
Sbjct: 15458 gcacgtcgtcgaggactgccgcggcgcgctgcagct 15423
to top
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_A10
          Length = 101249

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    cgccgccgccatgggctccg 61
             ||||||||||||||||||||
Sbjct: 52891 cgccgccgccatgggctccg 52910
to top
>dbj|AK106142.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G10, full
           insert sequence
          Length = 1199

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 207 gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
           |||||||||| ||||||||  | |||||||||||||
Sbjct: 102 gcacgtcgtcgaggactgccgcggcgcgctgcagct 137
to top
>dbj|AK106008.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-A09, full
           insert sequence
          Length = 1375

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 207 gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
           |||||||||| ||||||||  | |||||||||||||
Sbjct: 111 gcacgtcgtcgaggactgccgcggcgcgctgcagct 146
to top
>dbj|AK065219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002G12,
          full insert sequence
          Length = 1989

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 42 cgccgccgccatgggctccg 61
          ||||||||||||||||||||
Sbjct: 74 cgccgccgccatgggctccg 93
to top
>emb|CR933839.10| Zebrafish DNA sequence from clone DKEY-244A7 in linkage group 18,
            complete sequence
          Length = 88900

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  aagaattagtttcttctgtt 408
            ||||||||||||||||||||
Sbjct: 9651 aagaattagtttcttctgtt 9632
to top
>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    ttctgttaaaatttatgaga 421
              ||||||||||||||||||||
Sbjct: 135856 ttctgttaaaatttatgaga 135875
to top
>dbj|AK061530.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-E02, full
           insert sequence
          Length = 1377

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 207 gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
           |||||||||| ||||||||  | |||||||||||||
Sbjct: 111 gcacgtcgtcgaggactgccgcggcgcgctgcagct 146
to top
>emb|BX005012.7| Zebrafish DNA sequence from clone DKEY-11P23 in linkage group 16,
             complete sequence
          Length = 213678

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 384   attggaagaattagtttcttctgt 407
             ||||||||| ||||||||||||||
Sbjct: 78157 attggaagagttagtttcttctgt 78134
to top
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1714_H10
          Length = 191580

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                  
Query: 207    gcacgtcgtcaaggactgcgaccgcgcgctgcagct 242
              |||||||||| ||||||||  | |||||||||||||
Sbjct: 185331 gcacgtcgtcgaggactgccgcggcgcgctgcagct 185296
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 225     cgaccgcgcgctgcagctcg 244
               ||||||||||||||||||||
Sbjct: 2349216 cgaccgcgcgctgcagctcg 2349235
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 224    gcgaccgcgcgctgcagctcgacc 247
              ||||||||| ||||||||||||||
Sbjct: 942445 gcgaccgcgagctgcagctcgacc 942468
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 42       cgccgccgccatgggctccg 61
                ||||||||||||||||||||
Sbjct: 18222519 cgccgccgccatgggctccg 18222538
to top
>emb|AL663041.6| Mouse DNA sequence from clone RP23-342H16 on chromosome 11, complete
             sequence
          Length = 167123

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    cccccaccctgacctcctcc 31
             ||||||||||||||||||||
Sbjct: 94597 cccccaccctgacctcctcc 94578
to top
>emb|AL671914.9| Mouse DNA sequence from clone RP23-1A3 on chromosome X, complete sequence
          Length = 229809

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 406    gttaaaatttatgagacggttgag 429
              ||||||||||||||||| ||||||
Sbjct: 134134 gttaaaatttatgagactgttgag 134157


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,076,278
Number of Sequences: 3902068
Number of extensions: 4076278
Number of successful extensions: 90267
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89767
Number of HSP's gapped (non-prelim): 495
length of query: 472
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 450
effective length of database: 17,147,199,772
effective search space: 7716239897400
effective search space used: 7716239897400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top