ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27d12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK072121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122J23, full insert sequence Length = 3145 Score = 135 bits (68), Expect = 8e-29 Identities = 113/128 (88%) Strand = Plus / Plus Query: 116 atggctcaccggctgctgcacggcaccctccacgccaccatcttggaggccgacaacctc 175 |||||||||| ||||||||||||||| ||| | ||||||||| | ||||||||| ||||| Sbjct: 139 atggctcacctgctgctgcacggcacgctcgaggccaccatcctcgaggccgaccacctc 198 Query: 176 accaaccccgaccgcgccaccggcggcgccccccagatcttccgcaggttcgtggagggg 235 |||||||| |||||||||||||| ||||||| ||||||||||| ||||||||| ||| Sbjct: 199 tccaaccccacccgcgccaccggcgccgcccccgggatcttccgcaagttcgtggaaggg 258 Query: 236 ttcgagga 243 |||||||| Sbjct: 259 ttcgagga 266
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 107 bits (54), Expect = 2e-20 Identities = 93/106 (87%) Strand = Plus / Plus Query: 116 atggctcaccggctgctgcacggcaccctccacgccaccatcttggaggccgacaacctc 175 |||||||||| ||||||||||||||| ||| | ||||||||| | ||||||||| ||||| Sbjct: 23545198 atggctcacctgctgctgcacggcacgctcgaggccaccatcctcgaggccgaccacctc 23545257 Query: 176 accaaccccgaccgcgccaccggcggcgccccccagatcttccgca 221 |||||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 23545258 tccaaccccacccgcgccaccggcgccgcccccgggatcttccgca 23545303 Score = 95.6 bits (48), Expect = 7e-17 Identities = 96/112 (85%) Strand = Plus / Plus Query: 110 gcagcaatggctcaccggctgctgcacggcaccctccacgccaccatcttggaggccgac 169 |||||||||||||||| |||| |||||||||| ||| ||||||||||||| |||||| | Sbjct: 23538361 gcagcaatggctcacctgctgatgcacggcacgctcgacgccaccatcttcgaggccacc 23538420 Query: 170 aacctcaccaaccccgaccgcgccaccggcggcgccccccagatcttccgca 221 ||||||||||||||| |||| ||||||| ||||||| || |||||||| Sbjct: 23538421 aacctcaccaaccccacccgcctcaccggcaacgcccccgagggcttccgca 23538472 Score = 75.8 bits (38), Expect = 7e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 127 gctgctgcacggcaccctccacgccaccatcttggaggccgacaacctcaccaaccccga 186 |||| |||| ||||||||| ||||||||||||| |||||| |||||||||||||||| Sbjct: 23530056 gctgatgcatggcaccctcgacgccaccatcttcgaggccaccaacctcaccaaccccac 23529997 Query: 187 ccgcgccaccggcggcgccccc 208 |||| ||||||| |||||||| Sbjct: 23529996 ccgcctcaccggcagcgccccc 23529975
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 107 bits (54), Expect = 2e-20 Identities = 93/106 (87%) Strand = Plus / Plus Query: 116 atggctcaccggctgctgcacggcaccctccacgccaccatcttggaggccgacaacctc 175 |||||||||| ||||||||||||||| ||| | ||||||||| | ||||||||| ||||| Sbjct: 26162 atggctcacctgctgctgcacggcacgctcgaggccaccatcctcgaggccgaccacctc 26221 Query: 176 accaaccccgaccgcgccaccggcggcgccccccagatcttccgca 221 |||||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 26222 tccaaccccacccgcgccaccggcgccgcccccgggatcttccgca 26267 Score = 95.6 bits (48), Expect = 7e-17 Identities = 96/112 (85%) Strand = Plus / Plus Query: 110 gcagcaatggctcaccggctgctgcacggcaccctccacgccaccatcttggaggccgac 169 |||||||||||||||| |||| |||||||||| ||| ||||||||||||| |||||| | Sbjct: 19325 gcagcaatggctcacctgctgatgcacggcacgctcgacgccaccatcttcgaggccacc 19384 Query: 170 aacctcaccaaccccgaccgcgccaccggcggcgccccccagatcttccgca 221 ||||||||||||||| |||| ||||||| ||||||| || |||||||| Sbjct: 19385 aacctcaccaaccccacccgcctcaccggcaacgcccccgagggcttccgca 19436 Score = 75.8 bits (38), Expect = 7e-11 Identities = 71/82 (86%) Strand = Plus / Minus Query: 127 gctgctgcacggcaccctccacgccaccatcttggaggccgacaacctcaccaaccccga 186 |||| |||| ||||||||| ||||||||||||| |||||| |||||||||||||||| Sbjct: 11020 gctgatgcatggcaccctcgacgccaccatcttcgaggccaccaacctcaccaaccccac 10961 Query: 187 ccgcgccaccggcggcgccccc 208 |||| ||||||| |||||||| Sbjct: 10960 ccgcctcaccggcagcgccccc 10939
>dbj|AB001919.1| Oryza sativa (japonica cultivar-group) gene for phospholipase D, complete cds Length = 5169 Score = 107 bits (54), Expect = 2e-20 Identities = 93/106 (87%) Strand = Plus / Plus Query: 116 atggctcaccggctgctgcacggcaccctccacgccaccatcttggaggccgacaacctc 175 |||||||||| ||||||||||||||| ||| | ||||||||| | ||||||||| ||||| Sbjct: 1937 atggctcacctgctgctgcacggcacgctcgaggccaccatcctcgaggccgaccacctc 1996 Query: 176 accaaccccgaccgcgccaccggcggcgccccccagatcttccgca 221 |||||||| |||||||||||||| ||||||| ||||||||||| Sbjct: 1997 tccaaccccacccgcgccaccggcgccgcccccgggatcttccgca 2042
>dbj|AK119861.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-178-H08, full insert sequence Length = 2783 Score = 103 bits (52), Expect = 3e-19 Identities = 97/112 (86%) Strand = Plus / Plus Query: 110 gcagcaatggctcaccggctgctgcacggcaccctccacgccaccatcttggaggccgac 169 |||||||||||||||| |||| |||||||||| ||| ||||||||||||| |||||| | Sbjct: 74 gcagcaatggctcacctgctgatgcacggcacgctcgacgccaccatcttcgaggccacc 133 Query: 170 aacctcaccaaccccgaccgcgccaccggcggcgccccccagatcttccgca 221 ||||||||||||||| |||| |||||||| ||||||| || |||||||| Sbjct: 134 aacctcaccaaccccacccgccccaccggcaacgcccccgagggcttccgca 185
>gb|AF271357.1| Oryza sativa (indica cultivar-group) phospholipase D (RPLD4) gene, complete cds Length = 4740 Score = 95.6 bits (48), Expect = 7e-17 Identities = 96/112 (85%) Strand = Plus / Plus Query: 110 gcagcaatggctcaccggctgctgcacggcaccctccacgccaccatcttggaggccgac 169 |||||||||||||||| |||| |||||||||| ||| ||||||||||||| |||||| | Sbjct: 1560 gcagcaatggctcacctgctgatgcacggcacgctcgacgccaccatcttcgaggccacc 1619 Query: 170 aacctcaccaaccccgaccgcgccaccggcggcgccccccagatcttccgca 221 ||||||||||||||| |||| ||||||| ||||||| || |||||||| Sbjct: 1620 aacctcaccaaccccacccgcctcaccggcaacgcccccgagggcttccgca 1671
>dbj|D73410.1|MZEPHD1 Zea mays mRNA for phospholipase D, complete cds Length = 2793 Score = 77.8 bits (39), Expect = 2e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 129 tgctgcacggcaccctccacgccaccatcttggaggccgacaacctcaccaaccccgacc 188 |||| |||||||| ||||||||||||||||| |||||||| ||| ||||||| ||| Sbjct: 120 tgctccacggcacgctccacgccaccatcttcgaggccgagtcgctctccaacccgcacc 179 Query: 189 gcgccaccggcggcgccccccagatcttccgcaggttcgtggaggggttcgagga 243 ||||||| |||||||||||| || || |||||| | | ||||| ||| ||||||| Sbjct: 180 gcgccactggcggcgcccccaagttcatccgcaagcttgtggaagggatcgagga 234
>gb|AF271356.1| Oryza sativa (indica cultivar-group) phospholipase D (RPLD3) gene, complete cds Length = 6672 Score = 75.8 bits (38), Expect = 7e-11 Identities = 71/82 (86%) Strand = Plus / Plus Query: 127 gctgctgcacggcaccctccacgccaccatcttggaggccgacaacctcaccaaccccga 186 |||| |||| ||||||||| ||||||||||||| |||||| |||||||||||||||| Sbjct: 1631 gctgatgcatggcaccctcgacgccaccatcttcgaggccaccaacctcaccaaccccac 1690 Query: 187 ccgcgccaccggcggcgccccc 208 |||| ||||||| |||||||| Sbjct: 1691 ccgcctcaccggcagcgccccc 1712
>dbj|AK121264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D06, full insert sequence Length = 2762 Score = 75.8 bits (38), Expect = 7e-11 Identities = 71/82 (86%) Strand = Plus / Plus Query: 127 gctgctgcacggcaccctccacgccaccatcttggaggccgacaacctcaccaaccccga 186 |||| |||| ||||||||| ||||||||||||| |||||| |||||||||||||||| Sbjct: 90 gctgatgcatggcaccctcgacgccaccatcttcgaggccaccaacctcaccaaccccac 149 Query: 187 ccgcgccaccggcggcgccccc 208 |||| ||||||| |||||||| Sbjct: 150 ccgcctcaccggcagcgccccc 171
>dbj|AK100278.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073L15, full insert sequence Length = 2821 Score = 75.8 bits (38), Expect = 7e-11 Identities = 71/82 (86%) Strand = Plus / Plus Query: 127 gctgctgcacggcaccctccacgccaccatcttggaggccgacaacctcaccaaccccga 186 |||| |||| ||||||||| ||||||||||||| |||||| |||||||||||||||| Sbjct: 90 gctgatgcatggcaccctcgacgccaccatcttcgaggccaccaacctcaccaaccccac 149 Query: 187 ccgcgccaccggcggcgccccc 208 |||| ||||||| |||||||| Sbjct: 150 ccgcctcaccggcagcgccccc 171
>gb|AY109642.1| Zea mays CL1830_1 mRNA sequence Length = 2876 Score = 61.9 bits (31), Expect = 1e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 129 tgctgcacggcaccctccacgccaccatcttggaggccgacaacctcaccaaccccgacc 188 |||| |||||||| ||||||||||||||||| |||||||| ||| ||||||| ||| Sbjct: 120 tgctccacggcacgctccacgccaccatcttcgaggccgagtcgctctccaacccgcacc 179 Query: 189 gcgccaccggcggcg 203 ||||||| ||||||| Sbjct: 180 gcgccactggcggcg 194
>gb|BT009262.1| Triticum aestivum clone wlk4.pk0022.b7:fis, full insert mRNA sequence Length = 2997 Score = 50.1 bits (25), Expect = 0.004 Identities = 76/93 (81%) Strand = Plus / Plus Query: 142 cctccacgccaccatcttggaggccgacaacctcaccaaccccgaccgcgccaccggcgg 201 |||||||| ||||||||| |||||| | ||| || |||||| |||||||| |||||| Sbjct: 157 cctccacgtcaccatcttcgaggcctcctcgctctcccaccccggccgcgccagcggcgg 216 Query: 202 cgccccccagatcttccgcaggttcgtggaggg 234 ||||||| || || |||||| ||| || ||||| Sbjct: 217 cgcccccaagttcatccgcaagtttgtagaggg 249
>gb|AY792974.1| Triticum aestivum meiosis 5 (M5) mRNA, complete cds Length = 1248 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 184 cgaccgcgccaccggcggcgcc 205 |||||||||||||||||||||| Sbjct: 793 cgaccgcgccaccggcggcgcc 772
>emb|X05263.1|XBRRNSP Xenopus borealis ribosomal gene spacer (28S-40S rRNA precursor) Length = 4000 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 180 accccgaccgcgccaccggcggcgcccccc 209 |||||| |||||||||| |||||||||||| Sbjct: 2289 accccgcccgcgccacccgcggcgcccccc 2260 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 180 accccgaccgcgccaccggcggcgcccccc 209 |||||| |||||||||| |||||||||||| Sbjct: 2066 accccgcccgcgccacccgcggcgcccccc 2037 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 180 accccgaccgcgccaccggcggcgcccccc 209 |||||| |||||||||| |||||||||||| Sbjct: 1849 accccgcccgcgccacccgcggcgcccccc 1820 Score = 44.1 bits (22), Expect = 0.23 Identities = 28/30 (93%) Strand = Plus / Minus Query: 180 accccgaccgcgccaccggcggcgcccccc 209 |||||| |||||||||| |||||||||||| Sbjct: 1641 accccgcccgcgccacccgcggcgcccccc 1612
>ref|XM_512915.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ14768 (LOC456307), mRNA Length = 2086 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 caccggctgctgcacggcacc 142 ||||||||||||||||||||| Sbjct: 1333 caccggctgctgcacggcacc 1353
>ref|NM_032836.1| Homo sapiens hypothetical protein FLJ14768 (FLJ14768), mRNA Length = 2651 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 caccggctgctgcacggcacc 142 ||||||||||||||||||||| Sbjct: 1468 caccggctgctgcacggcacc 1488
>gb|AC154227.2| Mus musculus BAC clone RP24-142A23 from chromosome 14, complete sequence Length = 156644 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 136242 acttgggaggtggaggtgaga 136262
>gb|AC145900.3| Pan troglodytes BAC clone RP43-40I9 from 7, complete sequence Length = 160229 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 41706 acttgggaggtggaggtgaga 41686
>ref|XM_541407.2| PREDICTED: Canis familiaris similar to Flt3 interacting zinc finger protein 1 (LOC484292), mRNA Length = 4233 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 caccggctgctgcacggcacc 142 ||||||||||||||||||||| Sbjct: 4120 caccggctgctgcacggcacc 4140
>emb|BX248409.5| Human DNA sequence from clone RP11-360D2 on chromosome 1 Contains the 5' end of a novel gene (FLJ45235), a novel gene, the 5' end of the gene for Kelch motif containing protein, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene and a CpG island, complete sequence Length = 127227 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 33999 acttgggaggtggaggtgaga 34019
>emb|AL390294.19| Human DNA sequence from clone RP11-379F12 on chromosome 10 Contains the 3' end of the TAF3 gene for TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa (TAF140,TAFII140), the GATA3 gene for GATA binding protein 3 (HDR,MGC5445), two novel genes and 3 CpG islands, complete sequence Length = 151559 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 88831 acttgggaggtggaggtgaga 88851
>emb|AL359834.18| Human DNA sequence from clone RP11-121P12 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 70248 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 8927 acttgggaggtggaggtgaga 8947
>gb|AC026689.6| Homo sapiens chromosome 5 clone CTB-55A14, complete sequence Length = 215150 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 126318 acttgggaggtggaggtgaga 126298
>gb|AC008735.9| Homo sapiens chromosome 19 clone CTD-2537I9, complete sequence Length = 223879 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 caccggctgctgcacggcacc 142 ||||||||||||||||||||| Sbjct: 83784 caccggctgctgcacggcacc 83804
>dbj|AK027674.1| Homo sapiens cDNA FLJ14768 fis, clone NT2RP3004125, moderately similar to Mus musculus zinc finger protein splice variant FIZ1-B (Fiz1) mRNA Length = 2651 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 caccggctgctgcacggcacc 142 ||||||||||||||||||||| Sbjct: 1468 caccggctgctgcacggcacc 1488
>gb|AC099777.2| Homo sapiens chromosome 3 clone RP11-332H21, complete sequence Length = 206537 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 115114 acttgggaggtggaggtgaga 115094
>gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22, complete sequence Length = 219436 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 145391 acttgggaggtggaggtgaga 145371
>gb|AF147413.1|AF147413 Homo sapiens full length insert cDNA clone YP60D12 Length = 564 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 530 acttgggaggtggaggtgaga 510
>gb|AC004486.1|AC004486 Homo sapiens 12q13 PAC RPCI3-432I18 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 92800 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 22882 acttgggaggtggaggtgaga 22902
>emb|AL671904.8| Mouse DNA sequence from clone RP23-243J2 on chromosome X, complete sequence Length = 132834 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 acttgggaggtggaggtgaga 102 ||||||||||||||||||||| Sbjct: 123024 acttgggaggtggaggtgaga 123004
>ref|XM_468579.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 591 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 acctcaccaaccccgaccgcgcca 194 ||||| |||||||||||||||||| Sbjct: 122 acctcgccaaccccgaccgcgcca 145
>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11, complete sequence Length = 146677 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgccaccggcggcgcccccc 209 |||||||||||||||||||| Sbjct: 23894 cgccaccggcggcgcccccc 23875
>gb|AC121362.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009N21, complete sequence Length = 164925 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgccaccggcggcgcccccc 209 |||||||||||||||||||| Sbjct: 128604 cgccaccggcggcgcccccc 128585
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 acctcaccaaccccgaccgcgcca 194 ||||| |||||||||||||||||| Sbjct: 1224466 acctcgccaaccccgaccgcgcca 1224443
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ggccgacaacctcaccaacc 182 |||||||||||||||||||| Sbjct: 322786 ggccgacaacctcaccaacc 322767 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ggccgacaacctcaccaacc 182 |||||||||||||||||||| Sbjct: 322510 ggccgacaacctcaccaacc 322491
>emb|AL596187.15| Mouse DNA sequence from clone RP23-287H9 on chromosome 11 Contains part of a novel gene, the 5' end of a gene that is a possible ortholog of human dynein axonemal heavy polypeptide 9 (DNAH9) and a CpG island, complete sequence Length = 202358 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cttgggaggtggaggtgaga 102 |||||||||||||||||||| Sbjct: 19894 cttgggaggtggaggtgaga 19875
>gb|AF403390.1| Grass carp reovirus strain GCRV-873 segment 4 non-structural protein NS1 gene, complete cds Length = 2320 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 144 tccacgccaccatcttggaggccgacaa 171 |||||||||||||| |||| |||||||| Sbjct: 1506 tccacgccaccatcctggaagccgacaa 1533
>gb|AE012438.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 346 of 460 of the complete genome Length = 10968 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cgaccgcgccaccggcggcg 203 |||||||||||||||||||| Sbjct: 6927 cgaccgcgccaccggcggcg 6908
>gb|AF312225.1|AF312225 Homo sapiens chromosome 2 map 2q37.1, complete sequence Length = 345102 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgag 101 |||||||||||||||||||| Sbjct: 73703 acttgggaggtggaggtgag 73722
>gb|AC019130.6| Homo sapiens BAC clone RP11-563E16 from 2, complete sequence Length = 139049 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgag 101 |||||||||||||||||||| Sbjct: 76816 acttgggaggtggaggtgag 76835
>gb|AC155709.5| Mus musculus 10 BAC RP24-200F4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 176109 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgag 101 |||||||||||||||||||| Sbjct: 163298 acttgggaggtggaggtgag 163317
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cgaccgcgccaccggcggcg 203 |||||||||||||||||||| Sbjct: 1109245 cgaccgcgccaccggcggcg 1109226
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 cgccaccggcggcgcccccc 209 |||||||||||||||||||| Sbjct: 9251949 cgccaccggcggcgcccccc 9251930
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 acctcaccaaccccgaccgcgcca 194 ||||| |||||||||||||||||| Sbjct: 1224464 acctcgccaaccccgaccgcgcca 1224441
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 accgcgccaccggcggcgcc 205 |||||||||||||||||||| Sbjct: 2406652 accgcgccaccggcggcgcc 2406671
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 accgcgccaccggcggcgcc 205 |||||||||||||||||||| Sbjct: 819294 accgcgccaccggcggcgcc 819313
>gb|AC098695.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1126B12, complete sequence Length = 146241 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 acctcaccaaccccgaccgcgcca 194 ||||| |||||||||||||||||| Sbjct: 29368 acctcgccaaccccgaccgcgcca 29345
>emb|AL773518.3| Mouse DNA sequence from clone RP24-231F12 on chromosome 4, complete sequence Length = 205765 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 ctggagctctgacttgggag 90 |||||||||||||||||||| Sbjct: 24110 ctggagctctgacttgggag 24091
>dbj|AK104414.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B12, full insert sequence Length = 1268 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 acctcaccaaccccgaccgcgcca 194 ||||| |||||||||||||||||| Sbjct: 150 acctcgccaaccccgaccgcgcca 173
>dbj|AK071416.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093A18, full insert sequence Length = 875 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 acctcaccaaccccgaccgcgcca 194 ||||| |||||||||||||||||| Sbjct: 153 acctcgccaaccccgaccgcgcca 176
>dbj|AK068438.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154K17, full insert sequence Length = 1285 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 acctcaccaaccccgaccgcgcca 194 ||||| |||||||||||||||||| Sbjct: 153 acctcgccaaccccgaccgcgcca 176
>gb|AC151053.2| Mus musculus BAC clone RP23-402A4 from 7, complete sequence Length = 201862 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cttgggaggtggaggtgaga 102 |||||||||||||||||||| Sbjct: 68519 cttgggaggtggaggtgaga 68538
>gb|AC148977.3| Mus musculus BAC clone RP23-387F1 from 7, complete sequence Length = 201967 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cttgggaggtggaggtgaga 102 |||||||||||||||||||| Sbjct: 5024 cttgggaggtggaggtgaga 5043
>emb|AL731670.13| Mouse DNA sequence from clone RP23-463E7 on chromosome 11, complete sequence Length = 198411 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 cttgggaggtggaggtgaga 102 |||||||||||||||||||| Sbjct: 89567 cttgggaggtggaggtgaga 89548
>gb|AC152980.2| Mus musculus 10 BAC RP23-462F3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 165602 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 acttgggaggtggaggtgag 101 |||||||||||||||||||| Sbjct: 34617 acttgggaggtggaggtgag 34636 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,197,324 Number of Sequences: 3902068 Number of extensions: 2197324 Number of successful extensions: 98336 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97857 Number of HSP's gapped (non-prelim): 478 length of query: 278 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 256 effective length of database: 17,147,199,772 effective search space: 4389683141632 effective search space used: 4389683141632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
