Clone Information

BLAST Search Result

Clone Name	bastl27d08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VE2_HPV15 (P36784) Regulatory protein E2	34	0.16
2	CP007_HUMAN (Q9Y2B5) Protein C16orf7 (Protein ATP-BL)	33	0.27
3	PROP1_CANFA (Q9TTD8) Homeobox protein prophet of Pit-1 (PROP-1) ...	33	0.36
4	EMSY_HUMAN (Q7Z589) Protein EMSY	28	0.51
5	VIV1_MAIZE (P26307) Regulatory protein viviparous-1	31	1.3
6	TSC2_MOUSE (Q61037) Tuberin (Tuberous sclerosis 2 homolog protein)	31	1.3
7	REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)	31	1.8
8	MATK_HUMAN (P42679) Megakaryocyte-associated tyrosine-protein ki...	31	1.8
9	CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22	31	1.8
10	TSC2_RAT (P49816) Tuberin (Tuberous sclerosis 2 homolog protein)	31	1.8
11	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	30	2.3
12	I12R2_HUMAN (Q99665) Interleukin-12 receptor beta-2 chain precur...	30	3.9
13	GRPE_NEUCR (Q9P5U4) GrpE protein homolog, mitochondrial precursor	30	3.9
14	INSI1_RAT (Q08755) Insulin-induced gene 1 protein (INSIG-1) (Ins...	30	3.9
15	INSI1_MOUSE (Q8BGI3) Insulin-induced gene 1 protein (INSIG-1)	30	3.9
16	AB1IP_BRARE (Q6PFT9) Amyloid beta A4 precursor protein-binding f...	30	3.9
17	KLRA7_MOUSE (Q60654) Killer cell lectin-like receptor 7 (T-cell ...	30	3.9
18	GDF15_RAT (Q9Z0J6) Growth/differentiation factor 15 precursor (G...	30	3.9
19	INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)	30	3.9
20	INSI1_HUMAN (O15503) Insulin-induced gene 1 protein (INSIG-1)	30	3.9
21	GLGB_METCA (Q608L5) 1,4-alpha-glucan branching enzyme (EC 2.4.1....	29	5.1
22	SEPP1_MOUSE (P70274) Selenoprotein P precursor (SeP) (Plasma sel...	29	5.1
23	SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Se...	29	5.1
24	NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Si...	29	6.7
25	BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle pr...	29	6.7
26	KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H...	29	6.7
27	H2A3_CHICK (P35062) Histone H2A-III	29	6.7
28	KCNH2_RAT (O08962) Potassium voltage-gated channel subfamily H m...	29	6.7
29	BTUC_PHOLL (Q7N3Q3) Vitamin B12 import system permease protein btuC	29	6.7
30	HXA1_HETFR (Q9IA19) Homeobox protein Hox-A1	28	8.7
31	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	28	8.7
32	SP100_MOUSE (O35892) Nuclear autoantigen Sp-100 (Speckled 100 kD...	28	8.7
33	KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H...	28	8.7
34	PROP1_THEGE (Q3LU41) Homeobox protein prophet of Pit-1 (PROP-1) ...	28	8.7
35	PROP1_HUMAN (O75360) Homeobox protein prophet of Pit-1 (PROP-1) ...	28	8.7
36	PROP1_CEBAP (Q3LU40) Homeobox protein prophet of Pit-1 (PROP-1) ...	28	8.7
37	PROP1_ALOBE (Q3LU38) Homeobox protein prophet of Pit-1 (PROP-1) ...	28	8.7
38	MPIP_YEAST (P23748) M-phase inducer phosphatase (EC 3.1.3.48) (M...	28	8.7
39	PROP1_GORGO (Q3LU39) Homeobox protein prophet of Pit-1 (PROP-1) ...	28	8.7

>VE2_HPV15 (P36784) Regulatory protein E2|
          Length = 382

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = -2

Query: 392 AAESPLASAQTSSLAILTG--APARTSARRLGNRRSQSQSFLEASQEKREGAQVERNWRR 219
           A ESP A+ Q SS ++ +    P RT ARR  NR+  S +     ++KR+G + E   RR
Sbjct: 141 APESP-ANRQLSSTSVSSRKRTPPRTEARRY-NRKESSPTTTTTRRQKRQGQRQEDTARR 198

Query: 218 SR 213
           SR
Sbjct: 199 SR 200

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>CP007_HUMAN (Q9Y2B5) Protein C16orf7 (Protein ATP-BL)|
          Length = 438

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 406 VQASQQLN-RLSPPPKQAASRFSPEPPQE-LQPGGWEIGGARASLFLKPAKRRGREHRWS 233
           ++ SQ L+  LSPP   AA R    PP   LQPG W +     +  L    R  R   WS
Sbjct: 356 LRPSQSLHCMLSPPEPSAAPRPQDSPPTPPLQPGPWGLPHPWGTPHLDCQTRTARSRTWS 415

Query: 232 GTGG 221
            + G
Sbjct: 416 SSWG 419

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>PROP1_CANFA (Q9TTD8) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 435 LHPPRTGSLPCRPPSS*IASRLRPNK 358
           LHPP TG LPC PP + +   L P K
Sbjct: 198 LHPPPTGHLPCPPPPTMLPLSLEPPK 223

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>EMSY_HUMAN (Q7Z589) Protein EMSY|
          Length = 1322

 Score = 28.1 bits (61), Expect(2) = 0.51
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 433  PSTTNWIFAVQASQQLNRLSPPPKQAASRFSPEPPQ 326
            P T   + AV+ +QQL +L   P Q      P+ PQ
Sbjct: 1040 PQTVVQVLAVKTTQQLPKLQQAPNQPKIYVQPQTPQ 1075



 Score = 23.1 bits (48), Expect(2) = 0.51
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 290  QSQSFLEASQEKREGAQVER 231
            QSQ  L AS EK+  +QVE+
Sbjct: 1075 QSQMSLPASSEKQTASQVEQ 1094

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>VIV1_MAIZE (P26307) Regulatory protein viviparous-1|
          Length = 691

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -2

Query: 395 PAAESPLASAQTSSLAILTGAPARTSARRLGNRRSQSQSFLEASQEKREGAQVERNWR 222
           P ++S  + A  SSL     AP +T     G R+      L A+ +KR+GA+ ++N R
Sbjct: 458 PLSKSNSSRAPPSSLEAAAAAP-QTKPAPAGARQDDIHHRLAAASDKRQGAKADKNLR 514

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>TSC2_MOUSE (Q61037) Tuberin (Tuberous sclerosis 2 homolog protein)|
          Length = 1814

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -3

Query: 400  ASQQLNRLSPPPKQAASRFSPEPPQELQPGGWEIGGARASLFLKPAKRRGREHRWSGTGG 221
            A+ + +R++ PP+      SP  P  L+P G+ I  +  S   K  +R   + R + +  
Sbjct: 1433 ATGEESRITVPPEGPLPSSSPRSPSGLRPRGYTISDSAPSRRGKRVERDNFKSRAAASSA 1492

Query: 220  EADNGTSPLLTF 185
            E   G +P   F
Sbjct: 1493 EKVPGINPSFVF 1504

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>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)|
          Length = 757

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = -1

Query: 456 SSTPAAWLHPPRTGSLPCRPPSS*IASRL--RPNKQPRDSHRSPRKNFSQAVGKSEEPEP 283
           ++T A      +T S P   P+  + S L    ++QP +  R PR  F+       EP+ 
Sbjct: 488 ATTSAPSAKSTKTASRPASTPTKSLTSSLDLEKSRQPFNKARRPRTIFNGPAVNQREPDI 547

Query: 282 VFS*SQPREEGGSTGGAELAEKQTTARRR 196
               +  R  G S G A+  E+ +  R R
Sbjct: 548 TLE-TMKRGIGESRGQADSQERSSEPRER 575

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>MATK_HUMAN (P42679) Megakaryocyte-associated tyrosine-protein kinase (EC|
           2.7.10.2) (Tyrosine-protein kinase CTK) (Protein kinase
           HYL) (Hematopoietic consensus tyrosine-lacking kinase)
          Length = 507

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -3

Query: 403 QASQQLNRLSPPPKQAASRFSPEPPQELQPGGWEIGGARASLFLKPAKRRGREHRWSG-- 230
           +A ++  R+ PP         P P   L    WE   AR   F K A++  RE R +G  
Sbjct: 435 EAVEKGYRMEPPEG------CPGPVHVLMSSCWEAEPARRPPFRKLAEKLARELRSAGAP 488

Query: 229 ---TGGEADNGTSP 197
              +G +AD  TSP
Sbjct: 489 ASVSGQDADGSTSP 502

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>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 5/90 (5%)
 Frame = -3

Query: 451  HTRSMAPSTTNWIFAVQASQQLNR-----LSPPPKQAASRFSPEPPQELQPGGWEIGGAR 287
            ++RS++ S T  + AV A  +  R     LSPP ++A    SP+ P    P G    G  
Sbjct: 771  YSRSLSRSVTPPLRAVDARARGRRYSSQSLSPPRRRAERSVSPQRP----PPGRRPRGDS 826

Query: 286  ASLFLKPAKRRGREHRWSGTGGEADNGTSP 197
             S    P  R  RE R       A    SP
Sbjct: 827  LSRSPSPPPRYAREQRRRRNSSSASASRSP 856

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>TSC2_RAT (P49816) Tuberin (Tuberous sclerosis 2 homolog protein)|
          Length = 1809

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -3

Query: 385  NRLSPPPKQAASRFSPEPPQELQPGGWEIGGARASLFLKPAKRRGREHRWSGTGGEADNG 206
            +R++ PP+      SP  P  L+P G+ I  +  S   K  +R   + R + +  E   G
Sbjct: 1439 SRITVPPEGPLPSSSPRSPSGLRPRGYTISDSAPSRRGKRVERDNFKSRTAASSAEKVPG 1498

Query: 205  TSPLLTF 185
             +P   F
Sbjct: 1499 INPSFVF 1505

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>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -2

Query: 329 ARTSARRLGNRRSQSQSFLEASQEKREGAQVERNWRRSRQRHVAAFNF*AKRSGQRD 159
           +R+ +R  G  RS+S+S    S++KR+G +  R   RSR R  +      KR  +RD
Sbjct: 330 SRSRSRSKGGSRSRSRS-RSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRD 385

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>I12R2_HUMAN (Q99665) Interleukin-12 receptor beta-2 chain precursor (IL-12|
           receptor beta-2) (IL-12R-beta2)
          Length = 862

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = -2

Query: 419 LDLCRAGLPAAESPLASAQTSSLAILTGAPARTSARRLGNRRSQSQSFLEASQEKREG-- 246
           ++LC AGL A     A+++     ++T  P R          S  Q ++   +E   G  
Sbjct: 414 MNLCEAGLLAPRQVSANSEGMDNILVTWQPPRKDP-------SAVQEYVVEWRELHPGGD 466

Query: 245 AQVERNWRRSRQRHVAA 195
            QV  NW RSR  +V+A
Sbjct: 467 TQVPLNWLRSRPYNVSA 483

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>GRPE_NEUCR (Q9P5U4) GrpE protein homolog, mitochondrial precursor|
          Length = 238

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 413 LCRAGLPAAESPLASAQTSSLAILTGAPARTSARRLGNRRSQSQSFLEASQEKREG 246
           LC     AA+ P+AS      A  T AP   SA R  +  ++ +   +   E++EG
Sbjct: 13  LCSGARVAAQRPIASQIFQMQAARTAAPQLRSAARWYSAEAEGEKKADEGAEQKEG 68

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>INSI1_RAT (Q08755) Insulin-induced gene 1 protein (INSIG-1) (Insulin-induced|
           growth response protein CL-6) (Immediate-early protein
           CL-6)
          Length = 259

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 415 SSSWWMEPCCGCA 453
           SS+WW+ PCCG A
Sbjct: 106 SSAWWVPPCCGTA 118

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>INSI1_MOUSE (Q8BGI3) Insulin-induced gene 1 protein (INSIG-1)|
          Length = 259

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 415 SSSWWMEPCCGCA 453
           SS+WW+ PCCG A
Sbjct: 106 SSAWWVPPCCGTA 118

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>AB1IP_BRARE (Q6PFT9) Amyloid beta A4 precursor protein-binding family B member|
           1-interacting protein (APBB1-interacting protein 1)
          Length = 646

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 400 ASQQLNRLSPPPKQAASRFSPEPPQELQP 314
           +S ++N+  PPPK   S F P P  +L P
Sbjct: 502 SSTKVNKFPPPPKFPQSSFPPPPMDDLPP 530

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>KLRA7_MOUSE (Q60654) Killer cell lectin-like receptor 7 (T-cell surface|
           glycoprotein Ly-49G) (Ly49-G antigen) (Lymphocyte
           antigen 49G)
          Length = 280

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +1

Query: 226 QFRSTCAPSLFSWLA-----SRKDWLWLLRFPNRLA 318
           +F    APS  SW+       +KDW+W+   P++LA
Sbjct: 202 KFLQNLAPSDISWIGLSYDNKKKDWVWIDNGPSKLA 237

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>GDF15_RAT (Q9Z0J6) Growth/differentiation factor 15 precursor (GDF-15)|
          Length = 303

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -3

Query: 439 MAPSTTNWIFAVQASQQLNRLSPPPKQAASRFSPEPPQELQPGGWEIGGARASLFLKPAK 260
           + PS+  W       + ++   P  +    R +P P   + P G    GAR  L L+ A 
Sbjct: 128 LTPSSRPWDITRPLQRAISLQGPHARALRLRLAPPPDLAVLPSG----GARLELHLRSAA 183

Query: 259 RRGR 248
            RGR
Sbjct: 184 GRGR 187

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>INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)|
          Length = 257

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 415 SSSWWMEPCCGCA 453
           SS+WW+ PCCG A
Sbjct: 104 SSAWWVPPCCGTA 116

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>INSI1_HUMAN (O15503) Insulin-induced gene 1 protein (INSIG-1)|
          Length = 277

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 415 SSSWWMEPCCGCA 453
           SS+WW+ PCCG A
Sbjct: 124 SSAWWVPPCCGTA 136

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>GLGB_METCA (Q608L5) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 740

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 262 WLASRKDWLWLLRFPNRLAEVLAGA 336
           WLA RKDW WL R P  + E+ AG+
Sbjct: 234 WLAQRKDWPWLHR-PLSVYEMHAGS 257

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>SEPP1_MOUSE (P70274) Selenoprotein P precursor (SeP) (Plasma selenoprotein P)|
          Length = 380

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 80  SKSRQPPGHHRHHSIQNPHPDEHLG 154
           +K+ +P   H HH   N H  EHLG
Sbjct: 195 NKTAEPSEAHSHHKHHNKHGQEHLG 219

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>SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Selenoprotein|
           Se-P10; Selenoprotein Se-P6; Selenoprotein Se-P2;
           Selenoprotein Se-P1]
          Length = 385

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 80  SKSRQPPGHHRHHSIQNPHPDEHLG 154
           SK+ +P   H HH   + H  EHLG
Sbjct: 195 SKTTEPSEEHNHHKHHDKHGHEHLG 219

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>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator|
            of retinoic acid and thyroid hormone receptor) (SMRT)
            (SMRTe) (Thyroid-, retinoic-acid-receptor-associated
            corepressor) (T3 receptor-associating factor) (TRAC) (CTG
            repeat p
          Length = 2517

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
 Frame = -1

Query: 429  PPRTGSLPCRPPSS*IASRLRPNKQPRDSH----RSPRKNFSQAVGKSEEPEPVFS*SQP 262
            P R+G  P   PS    S  RP   P   H    R+P KN +      + P P  S S P
Sbjct: 1964 PARSGLEPASSPSK--GSEPRPLVPPVSGHATIARTPAKNLAPHHASPDPPAPPASASDP 2021

Query: 261  REE 253
              E
Sbjct: 2022 HRE 2024

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>BLI1_CAEEL (Q09457) Cuticle collagen bli-1 (Blistered cuticle protein 1)|
          Length = 963

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = -3

Query: 382 RLSPPPKQAASRFSPE-------PPQELQPGGWEIGGARASLFLKPAKRRGREHRWSGTG 224
           R  PP +Q      PE       PP     G +E+  +R  +   P  R+G EH  SG G
Sbjct: 662 RPPPPHRQTPHELYPEEQPYVRRPPPPQNRGNYEVERSREYVPEAPRPRQGYEHS-SGYG 720

Query: 223 GE 218
           G+
Sbjct: 721 GD 722

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>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go-related gene potassium channel 1) (ERG1)
            (RERG) (ra-erg) (Ether-a-go-go-related protein 1)
            (Eag-related protein 1)
          Length = 1161

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
 Frame = -1

Query: 435  LHPPRTGSLPCRPPSS*IASRLRPN----KQPRDSHRSPRKNFSQAVGKSEEPEPVFS*S 268
            L P R G+ P        +SR RP     + P     SP  +  +  G+S  P  +   S
Sbjct: 910  LGPGRAGAGP--------SSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPLRLVPFS 961

Query: 267  QPREEGGSTGGAELAE 220
             PR  G   GG  L E
Sbjct: 962  SPRPPGEPPGGEPLTE 977

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>H2A3_CHICK (P35062) Histone H2A-III|
          Length = 128

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 292 LLRFPNRLAEVLAGAPVRIARLLVWAEARGDSAAGRPARQRSSS 423
           LLR  N    V AGAPV +A +L +  A     AG PAR    +
Sbjct: 33  LLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNPARDNKKT 76

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>KCNH2_RAT (O08962) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go-related gene potassium channel 1) (ERG1)
            (r-ERG) (RERG) (Ether-a-go-go-related protein 1)
            (Eag-related protein 1)
          Length = 1163

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 360  KQPRDSHRSPRKNFSQAVGKSEEPEPVFS*SQPREEGGSTGGAELAE 220
            + P     SP  +  +  G+S  P  +   S PR  G S GG  L E
Sbjct: 933  ESPSSGPSSPESSEDEGPGRSSSPLRLVPFSSPRPPGDSPGGEPLTE 979

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>BTUC_PHOLL (Q7N3Q3) Vitamin B12 import system permease protein btuC|
          Length = 335

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +1

Query: 190 LKAATCRCLLLRQFRSTCAPSLFSW-----LASRKDWLWLLRFPNRLAEVLAGAPVRIAR 354
           L   TC  LL+  F S CA   + W       + + ++W LRFP  LA V  GA + +A 
Sbjct: 22  LAILTCLFLLVF-FLSLCAGENWIWPNKWFSETGQLFVWQLRFPRVLAVVAVGASLTVAG 80

Query: 355 LLVWA 369
            ++ A
Sbjct: 81  AVMQA 85

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>HXA1_HETFR (Q9IA19) Homeobox protein Hox-A1|
          Length = 326

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = +2

Query: 62  DPRRLCSKSRQ---PPGHHRHHSIQNPHPD 142
           D R + S+S Q   PP HH HH     HP+
Sbjct: 49  DDRYIVSRSVQIGAPPPHHHHHQSNYTHPN 78

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 454 KHTRSMAPSTTNWIFAVQASQQLNRLSPPPKQAASRFSPEPP 329
           +H+ S +PS +      + S +  R SP P  A  R SP PP
Sbjct: 517 RHSHSRSPSPSPRKRQKEPSPRRRRRSPSPPPARRRRSPSPP 558

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>SP100_MOUSE (O35892) Nuclear autoantigen Sp-100 (Speckled 100 kDa) (Nuclear|
           dot-associated Sp100 protein)
          Length = 482

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 367 PKQAASRFSPEPPQELQPGGWEIGGARASLFLKPAKRRGREHR 239
           P Q A  +S +PP   +  G +     +S+ ++  KR GR+ R
Sbjct: 291 PSQPAPAYSRKPPTLRRDRGGDTSDTESSIIIRRRKRTGRKKR 333

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>KCNH2_HUMAN (Q12809) Potassium voltage-gated channel subfamily H member 2|
            (Voltage-gated potassium channel subunit Kv11.1)
            (Ether-a-go-go related gene potassium channel 1) (H-ERG)
            (Erg1) (Ether-a-go-go related protein 1) (Eag-related
            protein 1) (eag homo
          Length = 1159

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
 Frame = -1

Query: 435  LHPPRTGSLPCRPPSS*IASRLRPN----KQPRDSHRSPRKNFSQAVGKSEEPEPVFS*S 268
            L P R G+ P        +SR RP     + P     SP  +  +  G+S  P  +   S
Sbjct: 908  LGPGRAGAGP--------SSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPLRLVPFS 959

Query: 267  QPREEGGSTGGAELAE 220
             PR  G   GG  L E
Sbjct: 960  SPRPPGEPPGGEPLME 975

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>PROP1_THEGE (Q3LU41) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 435 LHPPRTGSLPCRPPSS*IASRLRPNK 358
           LHP   G LPC PP   +   L P+K
Sbjct: 198 LHPTPAGHLPCPPPPPMLPLSLEPSK 223

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>PROP1_HUMAN (O75360) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 435 LHPPRTGSLPCRPPSS*IASRLRPNK 358
           LHP   G LPC PP   +   L P+K
Sbjct: 198 LHPAPAGHLPCPPPPPMLPLSLEPSK 223

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>PROP1_CEBAP (Q3LU40) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 435 LHPPRTGSLPCRPPSS*IASRLRPNK 358
           LHP   G LPC PP   +   L P+K
Sbjct: 198 LHPAPAGHLPCPPPPPMLPLSLEPSK 223

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>PROP1_ALOBE (Q3LU38) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 226

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 435 LHPPRTGSLPCRPPSS*IASRLRPNK 358
           LHP   G LPC PP   +   L P+K
Sbjct: 198 LHPAPAGHLPCPPPPPMLPLSLEPSK 223

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>MPIP_YEAST (P23748) M-phase inducer phosphatase (EC 3.1.3.48) (Mitosis|
           initiation protein MIH1) (Mitotic inducer homolog)
          Length = 554

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 384 IASRLRPNKQPRDSHRSPRKNFSQAVGKSEEPEPVFS*SQPREEGGST 241
           +AS   PN   RDSH+S     S A+    EP P  S +  R   GS+
Sbjct: 413 LASPSNPNFFYRDSHQSSTTMASSALSFRFEPPPKLSLNHRRVSSGSS 460

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>PROP1_GORGO (Q3LU39) Homeobox protein prophet of Pit-1 (PROP-1)|
           (Pituitary-specific homeodomain factor)
          Length = 225

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 435 LHPPRTGSLPCRPPSS*IASRLRPNK 358
           LHP   G LPC PP   +   L P+K
Sbjct: 197 LHPAPAGHLPCPPPPPMLPLSLEPSK 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,653,538
Number of Sequences: 219361
Number of extensions: 1581962
Number of successful extensions: 7530
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 6617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7469
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result