ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
2gb|AC012022.13| Homo sapiens 3 BAC RP11-117L15 (Roswell Park Can... 42 1.6
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
4gb|AC007893.8| Drosophila melanogaster clone BACR02E15, complete... 40 6.2
5ref|XM_880080.1| PREDICTED: Bos taurus similar to TBP-1 interact... 40 6.2
6ref|XM_585318.2| PREDICTED: Bos taurus similar to TBP-1 interact... 40 6.2
7gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome... 40 6.2
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.2
9gb|AC126440.3| Mus musculus BAC clone RP23-413M14 from chromosom... 40 6.2
10gb|AC127338.4| Mus musculus BAC clone RP23-174F20 from 7, comple... 40 6.2
11gb|BT009947.1| Drosophila melanogaster RH67917 full insert cDNA 40 6.2
12gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.2
13emb|AL109753.9|HSJ875J14 Human DNA sequence from clone RP5-875J1... 40 6.2
14emb|AL732529.6| Mouse DNA sequence from clone RP23-254N15 on chr... 40 6.2
15gb|AC161583.2| Mus musculus BAC clone RP24-566C13 from chromosom... 40 6.2
16gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.2
17ref|NM_057420.3| Drosophila melanogaster transient receptor pote... 40 6.2
18emb|AJ704745.2| Neisseria subflava tbpB gene for transferrin bin... 40 6.2
19emb|AJ704736.2| Neisseria flavescens tbpB gene for transferrin b... 40 6.2
20emb|AJ704735.2| Neisseria flavescens tbpB gene for transferrin b... 40 6.2
21emb|AJ704734.2| Neisseria flavescens tbpB gene for transferrin b... 40 6.2
22emb|AJ704733.2| Neisseria flavescens tbpB gene for transferrin b... 40 6.2
23emb|AJ704732.2| Neisseria flava tbpB gene for transferrin bindin... 40 6.2
24emb|AJ704731.2| Neisseria cinerea tbpB gene for transferrin bind... 40 6.2
25emb|AJ704730.2| Neisseria sicca tbpB gene for transferrin bindin... 40 6.2
26gb|AC153516.8| Mus musculus 10 BAC RP23-390D8 (Roswell Park Canc... 40 6.2
27gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 6.2
28emb|CR376864.1| Pan troglodytes chromosome X BAC PTB-045G22, com... 40 6.2
29dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
30gb|AF268475.1|AF268475 Neisseria meningitidis transferrin bindin... 40 6.2
31gb|AC007886.7|AC007886 Drosophila melanogaster, chromosome 3R, r... 40 6.2
32emb|Y17806.1|NME17806 Neisseria meningitidis serogroup B tbpB ge... 40 6.2
33emb|Y17805.1|NME17805 Neisseria meningitidis serogroup B tbpB ge... 40 6.2
34emb|AJ276936.1|NME276936 Neisseria meningitidis partial tbpB gen... 40 6.2
35emb|AJ276927.1|NME276927 Neisseria meningitidis partial tbpB gen... 40 6.2
36emb|AJ250244.1|NME250244 Neisseria meningitidis partial tbpB gen... 40 6.2
37emb|AJ223044.1|NME223044 Neisseria meningitidis tbpB gene, strai... 40 6.2
38emb|AJ223043.1|NME223043 Neisseria meningitidis tbpB gene, strai... 40 6.2
39emb|Z50731.1|NMTBP2163 N.meningitidis DNA for tbp2 gene (strain... 40 6.2
40emb|CT025611.16| Mouse DNA sequence from clone RP24-100P15 on ch... 40 6.2
41gb|AE003771.3| Drosophila melanogaster chromosome 3R, section 10... 40 6.2
42gb|M34394.1|DROTRP D.melanogaster trp protein gene, complete cds 40 6.2 
>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0040E06,
              complete sequence
          Length = 160907

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 357    gcttgtttgggcggaggcgag 377
              |||||||||||||||||||||
Sbjct: 102125 gcttgtttgggcggaggcgag 102145
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>gb|AC012022.13| Homo sapiens 3 BAC RP11-117L15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167994

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 241    tgtgctccctccctcttctct 261
              |||||||||||||||||||||
Sbjct: 109137 tgtgctccctccctcttctct 109117
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 357      gcttgtttgggcggaggcgag 377
                |||||||||||||||||||||
Sbjct: 28169450 gcttgtttgggcggaggcgag 28169470
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>gb|AC007893.8| Drosophila melanogaster clone BACR02E15, complete sequence
          Length = 182430

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    tcagctgctgggaggcctgc 404
              ||||||||||||||||||||
Sbjct: 147426 tcagctgctgggaggcctgc 147445
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>ref|XM_880080.1| PREDICTED: Bos taurus similar to TBP-1 interacting protein isoform
           2, transcript variant 2 (LOC508530), mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 ccacctgtgctccctccctc 255
           ||||||||||||||||||||
Sbjct: 849 ccacctgtgctccctccctc 830
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>ref|XM_585318.2| PREDICTED: Bos taurus similar to TBP-1 interacting protein isoform
           2, transcript variant 1 (LOC508530), mRNA
          Length = 1903

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 ccacctgtgctccctccctc 255
           ||||||||||||||||||||
Sbjct: 808 ccacctgtgctccctccctc 789
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>gb|AC125160.3| Mus musculus BAC clone RP24-409P4 from chromosome 7, complete sequence
          Length = 178643

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    acccaagaagactctgctca 82
             ||||||||||||||||||||
Sbjct: 26177 acccaagaagactctgctca 26196
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 34      cgcgaggaccctttctttcttcct 57
               ||||||||||||||||||| ||||
Sbjct: 5022158 cgcgaggaccctttctttcctcct 5022135
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>gb|AC126440.3| Mus musculus BAC clone RP23-413M14 from chromosome 14, complete
             sequence
          Length = 207346

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   ctccacctgtgctccctccc 253
             ||||||||||||||||||||
Sbjct: 86253 ctccacctgtgctccctccc 86234
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>gb|AC127338.4| Mus musculus BAC clone RP23-174F20 from 7, complete sequence
          Length = 199546

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 253   ctcttctcttggctggcttcaaga 276
             ||||| ||||||||||||||||||
Sbjct: 31988 ctcttgtcttggctggcttcaaga 32011
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>gb|BT009947.1| Drosophila melanogaster RH67917 full insert cDNA
          Length = 4146

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 385  tcagctgctgggaggcctgc 404
            ||||||||||||||||||||
Sbjct: 1231 tcagctgctgggaggcctgc 1212
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>gb|AC145480.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0064E16, from chromosome 3, complete sequence
          Length = 139123

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 34    cgcgaggaccctttctttcttcct 57
             ||||||||||||||||||| ||||
Sbjct: 86612 cgcgaggaccctttctttcctcct 86589
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>emb|AL109753.9|HSJ875J14 Human DNA sequence from clone RP5-875J14 on chromosome Xq13.1-21.1
             Contains the 3' end of the ATRX gene for alpha
             thalassemia/mental retardation syndrome X-linked (RAD54
             homolog, S. cerevisiae), complete sequence
          Length = 148423

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ctcttctcttggctggcttc 272
             ||||||||||||||||||||
Sbjct: 39000 ctcttctcttggctggcttc 39019
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>emb|AL732529.6| Mouse DNA sequence from clone RP23-254N15 on chromosome 11, complete
            sequence
          Length = 12133

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   aagactctgctcaaaatctc 89
            ||||||||||||||||||||
Sbjct: 5542 aagactctgctcaaaatctc 5523
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>gb|AC161583.2| Mus musculus BAC clone RP24-566C13 from chromosome 12, complete sequence
          Length = 171366

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     accctttctttcttcctccc 60
              ||||||||||||||||||||
Sbjct: 112937 accctttctttcttcctccc 112956
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>gb|AC116426.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0058P18, from chromosome 3, complete sequence
          Length = 155037

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 34     cgcgaggaccctttctttcttcct 57
              ||||||||||||||||||| ||||
Sbjct: 147549 cgcgaggaccctttctttcctcct 147572
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>ref|NM_057420.3| Drosophila melanogaster transient receptor potential CG7875-RA (trp),
            mRNA
          Length = 4130

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 385  tcagctgctgggaggcctgc 404
            ||||||||||||||||||||
Sbjct: 1229 tcagctgctgggaggcctgc 1210
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>emb|AJ704745.2| Neisseria subflava tbpB gene for transferrin binding protein B,
           strain 9992
          Length = 1782

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ704736.2| Neisseria flavescens tbpB gene for transferrin binding protein B,
           strain 414
          Length = 1785

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ704735.2| Neisseria flavescens tbpB gene for transferrin binding protein B,
           strain 3656
          Length = 1785

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ704734.2| Neisseria flavescens tbpB gene for transferrin binding protein B,
           strain 3191
          Length = 1785

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ704733.2| Neisseria flavescens tbpB gene for transferrin binding protein B,
           strain 13120
          Length = 1785

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ704732.2| Neisseria flava tbpB gene for transferrin binding protein B, strain
           30008
          Length = 1782

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ704731.2| Neisseria cinerea tbpB gene for transferrin binding protein B,
           strain 415
          Length = 1782

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ704730.2| Neisseria sicca tbpB gene for transferrin binding protein B, strain
           9913
          Length = 1782

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>gb|AC153516.8| Mus musculus 10 BAC RP23-390D8 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 197506

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    agactggctctggctcctcc 298
              ||||||||||||||||||||
Sbjct: 132053 agactggctctggctcctcc 132034
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 356    tgcttgtttgggcggaggcg 375
              ||||||||||||||||||||
Sbjct: 475637 tgcttgtttgggcggaggcg 475656
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>emb|CR376864.1| Pan troglodytes chromosome X BAC PTB-045G22, complete sequence
          Length = 151492

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    ctcttctcttggctggcttc 272
              ||||||||||||||||||||
Sbjct: 107957 ctcttctcttggctggcttc 107938
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 34      cgcgaggaccctttctttcttcct 57
               ||||||||||||||||||| ||||
Sbjct: 5021373 cgcgaggaccctttctttcctcct 5021350
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>gb|AF268475.1|AF268475 Neisseria meningitidis transferrin binding-protein B (tbpB) mRNA,
           complete cds
          Length = 2139

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>gb|AC007886.7|AC007886 Drosophila melanogaster, chromosome 3R, region 99D-99D, BAC clone
             BACR07A18, complete sequence
          Length = 168469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   tcagctgctgggaggcctgc 404
             ||||||||||||||||||||
Sbjct: 28322 tcagctgctgggaggcctgc 28341
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>emb|Y17806.1|NME17806 Neisseria meningitidis serogroup B tbpB gene, strain 92/123
          Length = 2058

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 45  tgcttgtttgggcggaggcg 64
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>emb|Y17805.1|NME17805 Neisseria meningitidis serogroup B tbpB gene, strain 90/94
          Length = 2169

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ276936.1|NME276936 Neisseria meningitidis partial tbpB gene for transferrin binding
           protein B subunit, allele 66, strain Z3707
          Length = 2093

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 17  tgcttgtttgggcggaggcg 36
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>emb|AJ276927.1|NME276927 Neisseria meningitidis partial tbpB gene for transferrin binding
           protein B subunit, allele 55, strain Z5828
          Length = 2063

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 17  tgcttgtttgggcggaggcg 36
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>emb|AJ250244.1|NME250244 Neisseria meningitidis partial tbpB gene (allele 2) for transferrin
           binding protein B subunit
          Length = 2091

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 18  tgcttgtttgggcggaggcg 37
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>emb|AJ223044.1|NME223044 Neisseria meningitidis tbpB gene, strain 2713
          Length = 1809

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|AJ223043.1|NME223043 Neisseria meningitidis tbpB gene, strain NGPB24
          Length = 2043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|Z50731.1|NMTBP2163 N.meningitidis  DNA for tbp2 gene (strain BZ163)
          Length = 2163

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 tgcttgtttgggcggaggcg 375
           ||||||||||||||||||||
Sbjct: 57  tgcttgtttgggcggaggcg 76
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>emb|CT025611.16| Mouse DNA sequence from clone RP24-100P15 on chromosome 12, complete
             sequence
          Length = 240699

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    accctttctttcttcctccc 60
             ||||||||||||||||||||
Sbjct: 77192 accctttctttcttcctccc 77173
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>gb|AE003771.3| Drosophila melanogaster chromosome 3R, section 109 of 118 of the complete
              sequence
          Length = 242528

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 385    tcagctgctgggaggcctgc 404
              ||||||||||||||||||||
Sbjct: 184358 tcagctgctgggaggcctgc 184377
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>gb|M34394.1|DROTRP D.melanogaster trp protein gene, complete cds
          Length = 6484

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 385  tcagctgctgggaggcctgc 404
            ||||||||||||||||||||
Sbjct: 2398 tcagctgctgggaggcctgc 2379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,422,542
Number of Sequences: 3902068
Number of extensions: 5422542
Number of successful extensions: 114055
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113879
Number of HSP's gapped (non-prelim): 176
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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