ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27d04 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 37.4 bits (85), Expect = 0.019 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 4/95 (4%) Frame = +1 Query: 190 ELRSHAAALQGCAVRRALRCGQELHARLLRSARQPDTFLLDSLLNMYCKCGRLEDARRVF 369 E+ ++ LQG A + AL L ++R+ PD ++ L+ Y K G+++ A VF Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVF 394 Query: 370 DGMPHR----DVVAWTALLSAHTAAGDAEEALYLF 462 M + + V + A++ +G E+A+ F Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429 Score = 37.0 bits (84), Expect = 0.025 Identities = 18/74 (24%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Frame = +1 Query: 253 QELHARLLRSARQPDTFLLDSLLNMYCKCGRLEDARRVFDGMP----HRDVVAWTALLSA 420 ++L ++R +P+ ++L+N YC G++++A ++ GM + V ++ L++ Sbjct: 496 EKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLING 555 Query: 421 HTAAGDAEEALYLF 462 + E+AL LF Sbjct: 556 YCKISRMEDALVLF 569 Score = 33.5 bits (75), Expect = 0.27 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Frame = +1 Query: 289 QPDTFLLDSLLNMYCKCGRLEDARRVFDGMPHR----DVVAWTALLSAHTAAG 435 +PD L++ CK GR +AR++FD M R ++ + LL + G Sbjct: 298 EPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350 Score = 32.7 bits (73), Expect = 0.46 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Frame = +1 Query: 253 QELHARLLRSARQPDTFLLDSLLNMYCKCGRLEDARRVFDGMPH----RDVVAWTALLSA 420 +EL +L +T +S+++ +CK GR+ ++ ++F+ M +V+ + L++ Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520 Query: 421 HTAAGDAEEALYL 459 + AG +EA+ L Sbjct: 521 YCLAGKMDEAMKL 533 Score = 31.2 bits (69), Expect = 1.3 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Frame = +1 Query: 289 QPDTFLLDSLLNMYCKCGRLEDARRVFDGMPHR----DVVAWTALLSA--HTAAGDAEEA 450 +P+T +L+N YCK R+EDA +F M D++ + +L T A + Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602 Query: 451 LYL 459 LY+ Sbjct: 603 LYV 605 Score = 28.9 bits (63), Expect = 6.7 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Frame = +1 Query: 214 LQGCAVRRALRCGQELHARLLRSARQPDTFLLDSLLNMYCKCGRLEDARRVFDGMPHRDV 393 LQG R +EL+ R+ S Q + + +L+ CK +DA ++F + D+ Sbjct: 588 LQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDL 647 Query: 394 V----AWTALLSAHTAAGDAEEALYLF 462 + ++ A G +EA LF Sbjct: 648 KLEARTFNIMIDALLKVGRNDEAKDLF 674
>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)| (Leucine-rich PPR motif-containing protein) Length = 1273 Score = 35.4 bits (80), Expect = 0.072 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = +1 Query: 265 ARLLRSARQPDTFLLDSLLNMYCKCGRLEDARRVFDGMPHRDV----VAWTALLSAHTAA 432 A++ + QP+ L+ YC G +E A ++ M +D+ ++AL++ H A Sbjct: 65 AKMEEANIQPNRVTYQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARA 124 Query: 433 GDAEEA 450 GD E A Sbjct: 125 GDMENA 130
>HIS8_XANOR (Q5H0L0) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 363 Score = 31.2 bits (69), Expect = 1.3 Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 12/97 (12%) Frame = +1 Query: 175 DAQADELRSHAAALQGCAVRRAL--RCGQELHARLLRSARQPD---TFLLDSLLNMYCKC 339 D Q LRS AAL GCA + L R E L+R P+ + + MY C Sbjct: 56 DPQPQGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRGLCVPERDAVLVTPPVFGMYAVC 115 Query: 340 GRLEDARRVF-------DGMPHRDVVAWTALLSAHTA 429 RL++A V DG H D+ A A A A Sbjct: 116 ARLQNAPLVDVPLVDVPDGF-HADIPAIVAAALASNA 151
>HIS8_XANOM (Q2P3K2) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 363 Score = 31.2 bits (69), Expect = 1.3 Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 12/97 (12%) Frame = +1 Query: 175 DAQADELRSHAAALQGCAVRRAL--RCGQELHARLLRSARQPD---TFLLDSLLNMYCKC 339 D Q LRS AAL GCA + L R E L+R P+ + + MY C Sbjct: 56 DPQPQGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRGLCVPERDAVLVTPPVFGMYAVC 115 Query: 340 GRLEDARRVF-------DGMPHRDVVAWTALLSAHTA 429 RL++A V DG H D+ A A A A Sbjct: 116 ARLQNAPLVDVPLVDVPDGF-HADIPAIVAAALASNA 151
>HIS8_XANAC (P58891) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 363 Score = 31.2 bits (69), Expect = 1.3 Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 11/96 (11%) Frame = +1 Query: 175 DAQADELRSHAAALQGCAVRRAL--RCGQELHARLLRSARQPD---TFLLDSLLNMYCKC 339 D Q LRS AAL GCA + L R E L+R P+ + + MY C Sbjct: 56 DPQPKGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRGLCVPERDAVLVTPPVFGMYAVC 115 Query: 340 GRLEDARRV----FDGMP--HRDVVAWTALLSAHTA 429 RL++A V DG H D+ A A+ + A Sbjct: 116 ARLQNAPLVDVPLVDGPDGFHADIPAIVAMALSSNA 151
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 29.6 bits (65), Expect = 3.9 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Frame = +1 Query: 235 RALRCGQELHARLLRSARQPDTFLLDSLLNMYCKCGRLEDA----RRVFDGMPHRDVVAW 402 R L + L +R PD ++L++ YC+ +E+A RR+ D DV + Sbjct: 27 RKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATY 86 Query: 403 TALLSAHTAAGDAEEALYLF 462 +L++ + LYLF Sbjct: 87 NSLIAGAARRLMLDHVLYLF 106
>HIS8_XANC5 (Q3BUF6) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 363 Score = 29.3 bits (64), Expect = 5.1 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%) Frame = +1 Query: 175 DAQADELRSHAAALQGCAVRRAL--RCGQELHARLLRSARQPD---TFLLDSLLNMYCKC 339 D Q LRS AAL GCA + L R E L+R P + + MY C Sbjct: 56 DPQPKGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRGLCVPGRDAVLVTPPVFGMYAVC 115 Query: 340 GRLEDA 357 RL++A Sbjct: 116 ARLQNA 121
>VPHE_NPVAC (P24728) Polyhedral envelope protein (PE) (Polyhedral calyx| protein) Length = 252 Score = 28.9 bits (63), Expect = 6.7 Identities = 17/43 (39%), Positives = 23/43 (53%) Frame = -3 Query: 359 RASSRRPHLQYMLRSESRRNVSGCRAERSSRAWSSCPQRSARR 231 R+ SR PH + RS R S R+ SR+ SS P+R R+ Sbjct: 109 RSRSRSPHCRPRSRSPHCRPRSRSRSRSRSRSRSSSPRRGRRQ 151
>EPHA2_HUMAN (P29317) Ephrin type-A receptor 2 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor ECK) (Epithelial cell kinase) Length = 976 Score = 28.9 bits (63), Expect = 6.7 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 380 GIPSNTLRASSRRPHLQYMLRSESRRNVSGCRAERSSRAWS 258 G+ ++ S PH+ Y E+R VSG RS R S Sbjct: 391 GLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,914,420 Number of Sequences: 219361 Number of extensions: 812656 Number of successful extensions: 3038 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2970 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3037 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
