ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27d01 |
|---|---|
| Clone Library Name | barley_pub |
>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3| Length = 981 Score = 31.2 bits (69), Expect = 1.4 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Frame = -2 Query: 359 RVPHHQLLISRYHSLVL-----TRSRPHPPQSHCLPVPKN 255 +V HHQLL+ + + + S+ PP HC+P+P + Sbjct: 316 KVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355
>AMEL_MONDO (Q28462) Amelogenin| Length = 202 Score = 31.2 bits (69), Expect = 1.4 Identities = 14/49 (28%), Positives = 25/49 (51%) Frame = -2 Query: 407 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVP 261 HH ++ + S S +H +P ++H ++ +P PPQ +PVP Sbjct: 47 HHQIIPVLSQQHSPSHSLP------PQHHIPIMAAQQPAPPQQPVMPVP 89
>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)| (x.MCM7) Length = 720 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = +2 Query: 149 NSPFSAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRF 259 N+ S + +P +GR + KTVE N+Q AA+ SRF Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3| Length = 1333 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 344 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 243 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2| Length = 1333 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 344 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 243 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1| Length = 1333 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/34 (32%), Positives = 17/34 (50%) Frame = -2 Query: 344 QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 243 Q + H+ + +SR H P P+P +E PW Sbjct: 951 QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984
>AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-related protein| complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain) Length = 1094 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/69 (21%), Positives = 27/69 (39%) Frame = +2 Query: 248 ASRFWGQGXXXXXXXXXXXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTESH 427 A +F+ + S SE E G+ G +G N ++ + DS++ Sbjct: 672 AKKFYSESEEEEDSSDSSSDSESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRE 731 Query: 428 RVIRSLRTA 454 + + RTA Sbjct: 732 SGLENKRTA 740
>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 430 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%) Frame = +3 Query: 210 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 344 +QLK +K++ L+ GD +ET+T++ M+T+ +N +I K+ Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 29.3 bits (64), Expect = 5.2 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%) Frame = -2 Query: 353 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 258 PH L +S+ HSL++TR PH P S +CLP+P+ Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274
>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3| p110) (eIF3c) (p105) Length = 900 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%) Frame = +2 Query: 317 GSDSEKS-----EAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIR 439 GS+SE E + D NRYL ++D DD+DT+ RV++ Sbjct: 10 GSESEDESDYEVEVNEVQNDDVNNRYLQSGSEDDDDTDTK--RVVK 53
>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21| Length = 778 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = +2 Query: 317 GSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSD-TESHRVIRSLRTAHDE 463 GSDS+ +E+G GG+DG + L+++ S S T HR S R +E Sbjct: 411 GSDSQDTESGGGGKDGGPS--LSRFGAWSKISTLTSKHRTEPSSRNEPNE 458
>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3| glycoprotein) Length = 428 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -1 Query: 261 QKRDAMAAAACKLPSTVFKLESRPWSG*GSDPAENGE 151 ++ D M AAAC+LP F+ S +SG G+ A +G+ Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344
>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)| Length = 203 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = -2 Query: 407 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVPKNET 249 HH ++ + S TH + H +H V+ +P PQ +PVP ++ Sbjct: 77 HHQIIPVVSQQHPLTHTLQSH------HHIPVVPAQQPRVPQQAMMPVPGQQS 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,152,389 Number of Sequences: 219361 Number of extensions: 985730 Number of successful extensions: 4486 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3393 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4473 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
