ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 44 0.16
2gb|AC096625.25| Mus musculus strain C57BL/6J clone rp23-388i7 ma... 40 2.6
3gb|AC163613.5| Mus musculus BAC clone RP24-150N2 from chromosome... 40 2.6
4gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, R... 40 2.6
5gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer ... 40 2.6
6dbj|AK125374.1| Homo sapiens cDNA FLJ43384 fis, clone OCBBF20061... 40 2.6
7gb|AC025475.5| Homo sapiens chromosome 5 clone RP11-351N6, compl... 40 2.6
8gb|AC113431.2| Homo sapiens chromosome 5 clone RP11-90F2, comple... 40 2.6
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 2.6
10emb|AL049840.8|CNS0000K Human chromosome 14 DNA sequence BAC R-7... 40 2.6
11gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosom... 40 2.6
12dbj|AB070950.1| Streptomyces avermitilis peptide-1 biosynthetic ... 40 2.6

>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 91     ctctggcaccggcaacggcctcctca 116
              ||||||| ||||||||||||||||||
Sbjct: 256544 ctctggctccggcaacggcctcctca 256569



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>gb|AC096625.25| Mus musculus strain C57BL/6J clone rp23-388i7 map 1, complete sequence
          Length = 191415

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    gcctcatcagctgcggcggctacc 68
             ||||||||||||||||| ||||||
Sbjct: 49794 gcctcatcagctgcggctgctacc 49817



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>gb|AC163613.5| Mus musculus BAC clone RP24-150N2 from chromosome 1, complete
           sequence
          Length = 135256

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 45  gcctcatcagctgcggcggctacc 68
           ||||||||||||||||| ||||||
Sbjct: 676 gcctcatcagctgcggctgctacc 653



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>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete
              Sequence, complete sequence
          Length = 195048

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     agaagcaaagctccagaagc 88
              ||||||||||||||||||||
Sbjct: 187805 agaagcaaagctccagaagc 187824



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>gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 147520

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   gacaccagcctcatcagctg 57
            ||||||||||||||||||||
Sbjct: 6708 gacaccagcctcatcagctg 6689



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>dbj|AK125374.1| Homo sapiens cDNA FLJ43384 fis, clone OCBBF2006148, moderately
           similar to P53-BINDING PROTEIN 2
          Length = 3137

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 84  gaagcttctctggcaccggc 103
           ||||||||||||||||||||
Sbjct: 88  gaagcttctctggcaccggc 69



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>gb|AC025475.5| Homo sapiens chromosome 5 clone RP11-351N6, complete sequence
          Length = 186462

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   gctgctgccaagacaccagc 46
            ||||||||||||||||||||
Sbjct: 9060 gctgctgccaagacaccagc 9041



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>gb|AC113431.2| Homo sapiens chromosome 5 clone RP11-90F2, complete sequence
          Length = 156789

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     gctgctgccaagacaccagc 46
              ||||||||||||||||||||
Sbjct: 148737 gctgctgccaagacaccagc 148718



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 105     acggcctcctcaccgcgggtgtag 128
               |||||||||||||||| |||||||
Sbjct: 3985224 acggcctcctcaccgccggtgtag 3985247



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>emb|AL049840.8|CNS0000K Human chromosome 14 DNA sequence BAC R-73M18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165617

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     gaagcttctctggcaccggc 103
              ||||||||||||||||||||
Sbjct: 109196 gaagcttctctggcaccggc 109177



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>gb|AC138622.4| Mus musculus BAC clone RP23-100J15 from chromosome 6, complete sequence
          Length = 194611

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    agaagcaaagctccagaagc 88
             ||||||||||||||||||||
Sbjct: 49613 agaagcaaagctccagaagc 49632



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>dbj|AB070950.1| Streptomyces avermitilis peptide-1 biosynthetic gene cluster
          Length = 21391

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   acggcctcctcaccgcgggtgtag 128
             |||||||||||||||| |||||||
Sbjct: 10968 acggcctcctcaccgccggtgtag 10945


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,726,071
Number of Sequences: 3902068
Number of extensions: 1726071
Number of successful extensions: 109054
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108967
Number of HSP's gapped (non-prelim): 87
length of query: 203
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 181
effective length of database: 17,147,199,772
effective search space: 3103643158732
effective search space used: 3103643158732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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