ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl27c08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_184655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2268 Score = 129 bits (65), Expect = 9e-27 Identities = 103/115 (89%), Gaps = 3/115 (2%) Strand = Plus / Plus Query: 105 gccatggatcccatcatgaagctcctcgaggacgacgaagaggatgagagcatgcactcg 164 |||||||||||| |||| |||||||| || ||||||| ||| |||| |||||||||| Sbjct: 235 gccatggatcccctcataaagctccttgacgacgacgt---ggacgagaccatgcactcg 291 Query: 165 ggcgccgacgtcgaggccttcacggcggcgctgaaccgcgaggtcgagggcagcg 219 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 292 ggcgccgacgtcgaggccttcacggcggcgctcaaccgcgaggtggagggcagcg 346 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 317 tcatggacagtggcaaggttcagtaaagaatgacattggaaaccaggagagccaaca 373 ||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 444 tcatgaacagtggcagggttcagtaaagaatgaaattggaaaccaggagaaccaaca 500
>dbj|AK120625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152M06, full insert sequence Length = 2886 Score = 129 bits (65), Expect = 9e-27 Identities = 103/115 (89%), Gaps = 3/115 (2%) Strand = Plus / Plus Query: 105 gccatggatcccatcatgaagctcctcgaggacgacgaagaggatgagagcatgcactcg 164 |||||||||||| |||| |||||||| || ||||||| ||| |||| |||||||||| Sbjct: 71 gccatggatcccctcataaagctccttgacgacgacgt---ggacgagaccatgcactcg 127 Query: 165 ggcgccgacgtcgaggccttcacggcggcgctgaaccgcgaggtcgagggcagcg 219 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 128 ggcgccgacgtcgaggccttcacggcggcgctcaaccgcgaggtggagggcagcg 182 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 317 tcatggacagtggcaaggttcagtaaagaatgacattggaaaccaggagagccaaca 373 ||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 280 tcatgaacagtggcagggttcagtaaagaatgaaattggaaaccaggagaaccaaca 336
>dbj|AK070997.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077I17, full insert sequence Length = 1726 Score = 129 bits (65), Expect = 9e-27 Identities = 103/115 (89%), Gaps = 3/115 (2%) Strand = Plus / Plus Query: 105 gccatggatcccatcatgaagctcctcgaggacgacgaagaggatgagagcatgcactcg 164 |||||||||||| |||| |||||||| || ||||||| ||| |||| |||||||||| Sbjct: 43 gccatggatcccctcataaagctccttgacgacgacgt---ggacgagaccatgcactcg 99 Query: 165 ggcgccgacgtcgaggccttcacggcggcgctgaaccgcgaggtcgagggcagcg 219 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 100 ggcgccgacgtcgaggccttcacggcggcgctcaaccgcgaggtggagggcagcg 154 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 317 tcatggacagtggcaaggttcagtaaagaatgacattggaaaccaggagagccaaca 373 ||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 252 tcatgaacagtggcagggttcagtaaagaatgaaattggaaaccaggagaaccaaca 308
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 117 bits (59), Expect = 4e-23 Identities = 71/75 (94%) Strand = Plus / Minus Query: 145 aggatgagagcatgcactcgggcgccgacgtcgaggccttcacggcggcgctgaaccgcg 204 |||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 18459377 aggacgagaccatgcactcgggcgccgacgtcgaggccttcacggcggcgctcaaccgcg 18459318 Query: 205 aggtcgagggcagcg 219 |||| |||||||||| Sbjct: 18459317 aggtggagggcagcg 18459303 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 317 tcatggacagtggcaaggttcagtaaagaatgacattggaaaccaggagagccaaca 373 ||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 18456341 tcatgaacagtggcagggttcagtaaagaatgaaattggaaaccaggagaaccaaca 18456285 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 105 gccatggatcccatcatgaagctcctcgaggacgacg 141 |||||||||||| |||| |||||||| || ||||||| Sbjct: 18459528 gccatggatcccctcataaagctccttgacgacgacg 18459492 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 agcgctagcagcagcagtgc 235 |||||||||||||||||||| Sbjct: 11739873 agcgctagcagcagcagtgc 11739854
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 117 bits (59), Expect = 4e-23 Identities = 71/75 (94%) Strand = Plus / Minus Query: 145 aggatgagagcatgcactcgggcgccgacgtcgaggccttcacggcggcgctgaaccgcg 204 |||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 18453418 aggacgagaccatgcactcgggcgccgacgtcgaggccttcacggcggcgctcaaccgcg 18453359 Query: 205 aggtcgagggcagcg 219 |||| |||||||||| Sbjct: 18453358 aggtggagggcagcg 18453344 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 317 tcatggacagtggcaaggttcagtaaagaatgacattggaaaccaggagagccaaca 373 ||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 18450382 tcatgaacagtggcagggttcagtaaagaatgaaattggaaaccaggagaaccaaca 18450326 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 105 gccatggatcccatcatgaagctcctcgaggacgacg 141 |||||||||||| |||| |||||||| || ||||||| Sbjct: 18453569 gccatggatcccctcataaagctccttgacgacgacg 18453533 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 agcgctagcagcagcagtgc 235 |||||||||||||||||||| Sbjct: 11736636 agcgctagcagcagcagtgc 11736617
>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete sequence Length = 90673 Score = 117 bits (59), Expect = 4e-23 Identities = 71/75 (94%) Strand = Plus / Plus Query: 145 aggatgagagcatgcactcgggcgccgacgtcgaggccttcacggcggcgctgaaccgcg 204 |||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 21838 aggacgagaccatgcactcgggcgccgacgtcgaggccttcacggcggcgctcaaccgcg 21897 Query: 205 aggtcgagggcagcg 219 |||| |||||||||| Sbjct: 21898 aggtggagggcagcg 21912 Score = 81.8 bits (41), Expect = 2e-12 Identities = 53/57 (92%) Strand = Plus / Plus Query: 317 tcatggacagtggcaaggttcagtaaagaatgacattggaaaccaggagagccaaca 373 ||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 24874 tcatgaacagtggcagggttcagtaaagaatgaaattggaaaccaggagaaccaaca 24930 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 105 gccatggatcccatcatgaagctcctcgaggacgacg 141 |||||||||||| |||| |||||||| || ||||||| Sbjct: 21687 gccatggatcccctcataaagctccttgacgacgacg 21723
>gb|BC078288.1| Danio rerio zgc:100829, mRNA (cDNA clone MGC:100829 IMAGE:7138625), complete cds Length = 2230 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 376 atgaagaaaaacatctatattgcaaaaa 403 ||||||||||||||| |||||||||||| Sbjct: 1276 atgaagaaaaacatcaatattgcaaaaa 1249
>ref|NM_001003543.1| Danio rerio zgc:100829 (zgc:100829), mRNA Length = 2230 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 376 atgaagaaaaacatctatattgcaaaaa 403 ||||||||||||||| |||||||||||| Sbjct: 1276 atgaagaaaaacatcaatattgcaaaaa 1249
>emb|BX511240.5| Zebrafish DNA sequence from clone CH211-113H10, complete sequence Length = 175187 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Plus Query: 376 atgaagaaaaacatctatattgcaaaaa 403 ||||||||||||||| |||||||||||| Sbjct: 113013 atgaagaaaaacatcaatattgcaaaaa 113040
>emb|AL441884.5| Human DNA sequence from clone RP11-19A22 on chromosome 9 Contains part of a variant of the PTPRD gene for protein tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD), complete sequence Length = 137783 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 452 caacttcactctatactcaattg 474 ||||||||||||||||||||||| Sbjct: 34196 caacttcactctatactcaattg 34218
>emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chromosome 11p11.2-12 Contains the start of the CD44 (CD44 antigen (homing function andnIndian blood group system)) gene, ESTs, STSs, GSSs and a CpG island, complete sequence Length = 150533 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 aaaagagaagtcatccgggcct 422 |||||||||||||||||||||| Sbjct: 98656 aaaagagaagtcatccgggcct 98635
>ref|XM_631245.1| Dictyostelium discoideum hypothetical protein (DDB0188308), partial mRNA Length = 4251 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 acaacttcactctatactcaa 471 ||||||||||||||||||||| Sbjct: 2623 acaacttcactctatactcaa 2643
>ref|XM_873279.1| PREDICTED: Bos taurus similar to E74-like factor 3 (ets domain transcription factor, epithelial-specific ), transcript variant 4 (LOC508503), mRNA Length = 1875 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ctcctccttccagccgctgga 265 ||||||||||||||||||||| Sbjct: 1260 ctcctccttccagccgctgga 1240
>ref|XM_873174.1| PREDICTED: Bos taurus similar to E74-like factor 3 (ets domain transcription factor, epithelial-specific ), transcript variant 3 (LOC508503), mRNA Length = 1746 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ctcctccttccagccgctgga 265 ||||||||||||||||||||| Sbjct: 1131 ctcctccttccagccgctgga 1111
>ref|XM_873077.1| PREDICTED: Bos taurus similar to E74-like factor 3 (ets domain transcription factor, epithelial-specific ), transcript variant 2 (LOC508503), mRNA Length = 1112 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ctcctccttccagccgctgga 265 ||||||||||||||||||||| Sbjct: 497 ctcctccttccagccgctgga 477
>ref|XM_585288.2| PREDICTED: Bos taurus similar to E74-like factor 3 (ets domain transcription factor, epithelial-specific ), transcript variant 1 (LOC508503), mRNA Length = 1830 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 ctcctccttccagccgctgga 265 ||||||||||||||||||||| Sbjct: 1215 ctcctccttccagccgctgga 1195
>ref|XM_322800.1| Neurospora crassa OR74A predicted protein (NCU03543.1) partial mRNA Length = 1149 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgccggcggctcctccttcca 256 ||||||||||||||||||||| Sbjct: 384 cgccggcggctcctccttcca 404
>ref|XM_951729.1| Neurospora crassa OR74A hypothetical protein (NCU03543.1) partial mRNA Length = 1149 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgccggcggctcctccttcca 256 ||||||||||||||||||||| Sbjct: 384 cgccggcggctcctccttcca 404
>ref|XM_957207.1| Neurospora crassa OR74A hypothetical protein (NCU07714.1) partial mRNA Length = 2085 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gaggacgacgaagaggatgag 152 ||||||||||||||||||||| Sbjct: 1099 gaggacgacgaagaggatgag 1119
>ref|XM_328419.1| Neurospora crassa OR74A hypothetical protein (NCU07714.1) partial mRNA Length = 2085 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 gaggacgacgaagaggatgag 152 ||||||||||||||||||||| Sbjct: 1099 gaggacgacgaagaggatgag 1119
>emb|AL163300.2|HS21C100 Homo sapiens chromosome 21 segment HS21C100 Length = 340000 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 aaacatctatattgcaaaaaa 404 ||||||||||||||||||||| Sbjct: 158616 aaacatctatattgcaaaaaa 158596
>emb|AL669986.1|NCB7N14 Neurospora crassa DNA linkage group II BAC clone B7N14 Length = 107947 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 236 cgccggcggctcctccttcca 256 ||||||||||||||||||||| Sbjct: 102435 cgccggcggctcctccttcca 102455
>emb|AL731714.9| Mouse DNA sequence from clone RP23-117H24 on chromosome 11 Contains the gene for a novel protein (4933427E13Rik), complete sequence Length = 208133 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 369 caacagcatgaagaaaaacatctat 393 |||||||||||||||||| |||||| Sbjct: 130301 caacagcatgaagaaaaaaatctat 130277
>emb|AL954251.1| Pan troglodytes chromosome 22 clone PTB-044H21 map 22q22.3, complete sequence Length = 149587 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 aaacatctatattgcaaaaaa 404 ||||||||||||||||||||| Sbjct: 36424 aaacatctatattgcaaaaaa 36404
>gb|AC097358.2| Homo sapiens chromosome 3 clone RP11-157F20, complete sequence Length = 154606 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 aaaacatctatattgcaaaaa 403 ||||||||||||||||||||| Sbjct: 7847 aaaacatctatattgcaaaaa 7867
>gb|AC092050.3| Homo sapiens chromosome 3 clone RP11-263I16, complete sequence Length = 171934 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 383 aaaacatctatattgcaaaaa 403 ||||||||||||||||||||| Sbjct: 115961 aaaacatctatattgcaaaaa 115941
>dbj|AB187035.1| Dictyostelium discoideum mRNA for TmcB, complete cds Length = 4251 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 451 acaacttcactctatactcaa 471 ||||||||||||||||||||| Sbjct: 2623 acaacttcactctatactcaa 2643
>gb|AC099327.2| Homo sapiens chromosome 3 clone RP11-51O17, complete sequence Length = 184039 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 aaaacatctatattgcaaaaa 403 ||||||||||||||||||||| Sbjct: 175232 aaaacatctatattgcaaaaa 175252
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 359 ccaggagagccaacagcatgaagaa 383 ||||||||||||| ||||||||||| Sbjct: 7351883 ccaggagagccaagagcatgaagaa 7351907
>emb|AL773604.1|HS225L15 Homo sapiens chromosome 21 from PAC RP1-225L15, map 21q22.3 Length = 146350 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 384 aaacatctatattgcaaaaaa 404 ||||||||||||||||||||| Sbjct: 102248 aaacatctatattgcaaaaaa 102228
>gb|AY398338.1| Danio rerio clone RK126A4H06 E2F transcription factor 4, p107/p130-binding (E2F4) mRNA, complete cds Length = 1483 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 aaaaacatctatattgcaaaaaag 405 |||||| ||||||||||||||||| Sbjct: 617 aaaaacttctatattgcaaaaaag 640
>ref|XM_363192.1| Magnaporthe grisea 70-15 hypothetical protein (MG08776.4) partial cds Length = 1917 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gccgacgtcgaggccttcac 187 |||||||||||||||||||| Sbjct: 250 gccgacgtcgaggccttcac 269
>ref|XM_421987.1| PREDICTED: Gallus gallus similar to Alkyldihydroxyacetonephosphate synthase, peroxisomal precursor (Alkyl-DHAP synthase) (Alkylglycerone-phosphate synthase) (LOC424135), mRNA Length = 3217 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 374 gcatgaagaaaaacatctat 393 |||||||||||||||||||| Sbjct: 888 gcatgaagaaaaacatctat 907
>ref|XM_958399.1| Neurospora crassa OR74A hypothetical protein (NCU05404.1) partial mRNA Length = 1386 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 cggcggctcctccttccagc 258 |||||||||||||||||||| Sbjct: 1218 cggcggctcctccttccagc 1237
>ref|XM_325258.1| Neurospora crassa OR74A hypothetical protein (NCU05404.1) partial mRNA Length = 1386 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 cggcggctcctccttccagc 258 |||||||||||||||||||| Sbjct: 1218 cggcggctcctccttccagc 1237
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cagccgctggatcgcgccgctggt 278 |||||||||||| ||||||||||| Sbjct: 31844 cagccgctggatggcgccgctggt 31867
>ref|XM_535568.2| PREDICTED: Canis familiaris similar to Junctional adhesion molecule B precursor (JAMA-A) (Junctional adhesion molecule 2) (Vascular endothelial junction-associated molecule) (VE-JAM) (LOC478392), mRNA Length = 1625 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 369 caacagcatgaagaaaaacatcta 392 ||||| |||||||||||||||||| Sbjct: 1528 caacaacatgaagaaaaacatcta 1551
>ref|XM_814002.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506941.194) partial mRNA Length = 9627 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gaggacgacgaagaggatga 151 |||||||||||||||||||| Sbjct: 961 gaggacgacgaagaggatga 980
>ref|XM_547356.2| PREDICTED: Canis familiaris similar to E74-like factor 3 (ets domain transcription factor, epithelial-specific ) (LOC490235), mRNA Length = 1428 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcctccttccagccgctgga 265 |||||||||||||||||||| Sbjct: 1403 tcctccttccagccgctgga 1384
>ref|NM_205615.1| Danio rerio zgc:111879 (zgc:111879), mRNA Length = 1483 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 382 aaaaacatctatattgcaaaaaag 405 |||||| ||||||||||||||||| Sbjct: 617 aaaaacttctatattgcaaaaaag 640
>gb|AC118674.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0093J20, from chromosome 3, complete sequence Length = 148635 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 agcgctagcagcagcagtgc 235 |||||||||||||||||||| Sbjct: 128968 agcgctagcagcagcagtgc 128949
>ref|XM_962077.1| PREDICTED: Tribolium castaneum similar to CG11759-PA (LOC655524), mRNA Length = 2418 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 cgaggacgacgaagaggatg 150 |||||||||||||||||||| Sbjct: 2229 cgaggacgacgaagaggatg 2248
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcgccgacgtcgaggccttc 185 |||||||||||||||||||| Sbjct: 45349 gcgccgacgtcgaggccttc 45368
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 gcgccgacgtcgaggccttc 185 |||||||||||||||||||| Sbjct: 302033 gcgccgacgtcgaggccttc 302052
>emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BAC clone F1N13 (ESSA project) Length = 74687 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 aacaacttcactctatactc 469 |||||||||||||||||||| Sbjct: 55445 aacaacttcactctatactc 55464
>emb|AL389900.2|NCB15I20 Neurospora crassa DNA linkage group II BAC clone B15I20 Length = 47481 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 cggcggctcctccttccagc 258 |||||||||||||||||||| Sbjct: 35540 cggcggctcctccttccagc 35559
>emb|AL389901.1|NCB7F21 Neurospora crassa DNA linkage group II BAC clone B7F21 Length = 59412 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 cggcggctcctccttccagc 258 |||||||||||||||||||| Sbjct: 48681 cggcggctcctccttccagc 48662
>gb|AE005740.1| Caulobacter crescentus CB15 section 66 of 359 of the complete genome Length = 11134 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tccagccgctggatcgcgcc 272 |||||||||||||||||||| Sbjct: 1383 tccagccgctggatcgcgcc 1364
>gb|AC019153.13| Mus musculus chromosome 2 clone RP23-286D16, complete sequence Length = 195068 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 gaagaggatgagagcatgca 160 |||||||||||||||||||| Sbjct: 170233 gaagaggatgagagcatgca 170214
>gb|AC099550.5| Homo sapiens BAC clone RP11-484O2 from 4, complete sequence Length = 145479 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 aatgacattggaaaccagga 364 |||||||||||||||||||| Sbjct: 38174 aatgacattggaaaccagga 38193
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 cgcgaggcgaggcggcgacg 69 |||||||||||||||||||| Sbjct: 22228929 cgcgaggcgaggcggcgacg 22228948
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 cggccgcgaggcgaggcggcgacg 69 |||| ||||||||||||||||||| Sbjct: 22733472 cggcggcgaggcgaggcggcgacg 22733495
>gb|AC009961.11| Homo sapiens BAC clone RP11-357L2 from 2, complete sequence Length = 216571 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 aaaagcaacccagtagtaaa 310 |||||||||||||||||||| Sbjct: 214779 aaaagcaacccagtagtaaa 214798
>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0566A10 Length = 174367 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 cgcgaggcgaggcggcgacg 69 |||||||||||||||||||| Sbjct: 7352 cgcgaggcgaggcggcgacg 7371
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 cccatcatgaagctcctcgaggac 137 |||||||||||||| ||||||||| Sbjct: 4465829 cccatcatgaagctgctcgaggac 4465806
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 cggccgcgaggcgaggcggcgacg 69 |||| ||||||||||||||||||| Sbjct: 110184 cggcggcgaggcgaggcggcgacg 110207
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 46 cggccgcgaggcgaggcggcgacg 69 |||| ||||||||||||||||||| Sbjct: 50861 cggcggcgaggcgaggcggcgacg 50884
>emb|AL352977.4|CNS05TBW Human chromosome 14 DNA sequence BAC R-662J14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173820 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 aagaatgacattggaaacca 361 |||||||||||||||||||| Sbjct: 168787 aagaatgacattggaaacca 168806
>emb|BX004793.12| Mouse DNA sequence from clone RP23-188D9 on chromosome 2, complete sequence Length = 161514 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 gaagaggatgagagcatgca 160 |||||||||||||||||||| Sbjct: 26836 gaagaggatgagagcatgca 26855 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,779,187 Number of Sequences: 3902068 Number of extensions: 4779187 Number of successful extensions: 105541 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104811 Number of HSP's gapped (non-prelim): 727 length of query: 486 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 464 effective length of database: 17,147,199,772 effective search space: 7956300694208 effective search space used: 7956300694208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
