>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 301 GEPRALAHGGPLPAQRPAVRHDPLSRLHDLPR-PAAARPVMHGRAG 167
           G P + A G P P  RP  R  P++     P  P  ARP    R+G
Sbjct: 229 GRPGSSAGGPPRPVPRPGPRPSPMNMPASRPTPPGGARPSTSSRSG 274

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -3

Query: 304 LGEPRALAHGGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAASRIGGED 125
           +GE  A A G   PA++P    +P   + D P P+  RP   G     S  +A    G  
Sbjct: 338 VGEDAAAAEGRTPPARQPRAAQEPPIVISDSPPPSPRRPAGPGPLSFVSSSSAQVSSGPG 397

Query: 124 G 122
           G
Sbjct: 398 G 398

>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 348 PRGAPCGAVSGADTDSANRALLRMADRFP--PRGPLCG 241
           PRGAP    +G       R   + A+RFP   R PLCG
Sbjct: 511 PRGAPAYNPTGPQVTPLARGTFQRAERFPASSRTPLCG 548

>ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 473

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = -3

Query: 271 PLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSR 161
           P PA  PA    P S     PRPAAA P+ +GR G R
Sbjct: 275 PPPAPAPAPPPAPGS-----PRPAAAAPLANGRVGRR 306

>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher)
          Length = 727

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 348 PRGAPCGAVSGADTDSANRALLRMADRFP--PRGPLCG 241
           PRG P    +G       R  ++ A+RFP   R PLCG
Sbjct: 515 PRGGPAYTPAGPQVPPLARGTVQRAERFPASSRTPLCG 552

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 253 PAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAASRIGG 131
           PA+   P +  H +P P  A   + GR    SW    R GG
Sbjct: 539 PALAGAPTAHAHAVPGPGPAAATLGGRGRRGSWRGGRRGGG 579

>Y3456_MYCBO (P67172) Hypothetical UPF0079 protein Mb3456c|
          Length = 168

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 VVPHSGPLGGKRSAMRKSARFAESVSAPLTAP 331
           VV  SGPLG  ++ + K    A  V  P+T+P
Sbjct: 46  VVVLSGPLGAGKTVLAKGIAMAMDVEGPITSP 77

>Y3422_MYCTU (P67171) Hypothetical UPF0079 protein Rv3422c/MT3531|
          Length = 168

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 VVPHSGPLGGKRSAMRKSARFAESVSAPLTAP 331
           VV  SGPLG  ++ + K    A  V  P+T+P
Sbjct: 46  VVVLSGPLGAGKTVLAKGIAMAMDVEGPITSP 77

>CRF_SHEEP (P01142) Corticoliberin precursor (Corticotropin-releasing factor)|
           (CRF) (Corticotropin-releasing hormone)
           (Endorpholiberin)
          Length = 190

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 292 RALAHGGPLPAQRPAVRH-DPLSRLHDLPRP 203
           RAL   GP+P  R A +H  PLS    LP+P
Sbjct: 23  RALLSRGPIPGARQASQHPQPLSFFQPLPQP 53

>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP|
           3'-pyrophosphotransferase) (ppGpp synthetase I)
           ((P)ppGpp synthetase)
          Length = 841

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -3

Query: 298 EPRALAH--GGPL------PAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAAS 143
           EP A A   GGP+      PA +PA R  P     + PRP   R    G+  +RS  +++
Sbjct: 22  EPAAHAQDGGGPVEHDRSAPADKPAERTRPKPAPPERPRPPPPRARAAGQPAARSGGSSN 81

Query: 142 RI 137
           R+
Sbjct: 82  RV 83

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 102 YPPLSVQPSSPPILLAASQDRLPARPCI 185
           YPP S QP  PP   + S+ +LP  P I
Sbjct: 176 YPPSSAQPYLPPAQPSPSKPQLPPPPSI 203

>TBX1_MOUSE (P70323) T-box transcription factor TBX1 (T-box protein 1)|
           (Testis-specific T-box protein)
          Length = 479

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 357 PPPPRGAPCGAVSGADTDSANRA 289
           PPPPR  PC AV GA      RA
Sbjct: 36  PPPPRYDPCAAVPGAPGPPPPRA 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.120    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,393,252
Number of Sequences: 219361
Number of extensions: 609508
Number of successful extensions: 1757
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)