ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZDH24_RAT (Q2TGI5) Probable palmitoyltransferase ZDHHC24 (EC 2.3... 29 5.5
2ZDH24_MOUSE (Q6IR37) Probable palmitoyltransferase ZDHHC24 (EC 2... 29 5.5
3CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic sub... 28 9.4
4GAL7_SALTY (P22714) Galactose-1-phosphate uridylyltransferase (E... 28 9.4

>ZDH24_RAT (Q2TGI5) Probable palmitoyltransferase ZDHHC24 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 24) (DHHC-24)
           (Membrane-associated zinc finger protein DHHC25)
          Length = 284

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -1

Query: 192 PRLTAVPHPSPRLLSSAFLLIPWLPVVFSKANLPQSSL-----LCPSSAILGACNL 40
           P L+A+      L + A LL+PWL ++  K +L Q +L      C + A+L    L
Sbjct: 159 PALSALLQAHSALYTVALLLLPWLMLLTGKVSLAQFALAFVVDTCVAGALLCGAGL 214



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>ZDH24_MOUSE (Q6IR37) Probable palmitoyltransferase ZDHHC24 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 24) (DHHC-24)
          Length = 284

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -1

Query: 192 PRLTAVPHPSPRLLSSAFLLIPWLPVVFSKANLPQSSL-----LCPSSAILGACNL 40
           P L+A+      L + A LL+PWL ++  K +L Q +L      C + A+L    L
Sbjct: 159 PALSALLQAHSALYTVALLLLPWLMLLTGKVSLAQFALAFVVDTCVAGALLCGAGL 214



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>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9|
           [UDP-forming] (EC 2.4.1.12) (AtCesA-9)
          Length = 1088

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
 Frame = +2

Query: 2   KDVKERQSKASSERLHAPRMAEEG------HNNDDWGKLALEKTTG 121
           KD + ++ K +S+++HA    EEG       NN +  +L LEK  G
Sbjct: 686 KDNQRKKPKETSKQIHALEHIEEGLQVTNAENNSETAQLKLEKKFG 731



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>GAL7_SALTY (P22714) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 348

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 126 WLPVVFSKANLPQSSLLCPSSAILGACNLSDDALDCLSL 10
           WL VV   A  P  +LL P + +L   +LSD+  D L+L
Sbjct: 219 WLAVVPYWAAWPFETLLLPKTHVLRITDLSDEQRDSLAL 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,497,768
Number of Sequences: 219361
Number of extensions: 1096932
Number of successful extensions: 3089
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3088
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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