ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479973.1| Oryza sativa (japonica cultivar-group), mRNA 109 8e-21
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
3dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
4dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
5dbj|AK100455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
6gb|AY555143.1| Zea may BAC clone c573L14, complete sequence 98 3e-17
7gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 92 2e-15
8gb|AC006296.8|AC006296 Homo sapiens chromosome 4 clone C0153I05 ... 44 0.41
9ref|XM_854149.1| PREDICTED: Canis familiaris similar to helicase... 42 1.6
10gb|AC090445.3| Canis familiaris clone RP81-55A4, complete sequence 42 1.6
11emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete se... 42 1.6
12ref|NM_142240.1| Drosophila melanogaster CG14876-RA (CG14876), mRNA 42 1.6
13ref|XM_627626.1| Cryptosporidium parvum Iowa II hypothetical pro... 42 1.6
14ref|XM_662802.1| Cryptosporidium hominis TU502 splicing factor (... 42 1.6
15gb|BT022628.1| Drosophila melanogaster IP11992 full insert cDNA 42 1.6
16gb|BT022492.1| Drosophila melanogaster IP11792 full insert cDNA 42 1.6
17gb|AC010122.7|AC010122 Drosophila melanogaster, chromosome 3R, r... 42 1.6
18gb|AE003710.2| Drosophila melanogaster chromosome 3R, section 48... 42 1.6
19ref|NM_114803.3| Arabidopsis thaliana RNA binding / nucleic acid... 40 6.4
20gb|DQ207368.1| Homo sapiens pentaxin-related protein PTX3 (PTX3)... 40 6.4
21gb|AC110896.8| Mus musculus chromosome 3, clone RP24-127P11, com... 40 6.4
22gb|BC028656.1| Mus musculus RIKEN cDNA 2410018C17 gene, mRNA (cD... 40 6.4
23gb|BC016596.1| Mus musculus RIKEN cDNA 2410018C17 gene, mRNA (cD... 40 6.4
24ref|NM_178390.2| Mus musculus RIKEN cDNA 2410018C17 gene (241001... 40 6.4
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
26gb|AC147707.5| Canis Familiaris, clone XX-10C7, complete sequence 40 6.4
27gb|AC107741.15| Mus musculus chromosome 3, clone RP23-335P23, co... 40 6.4
28ref|XM_981480.1| PREDICTED: Mus musculus similar to Y32G9A.5 (LO... 40 6.4
29emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in ... 40 6.4
30gb|AC132233.4| Mus musculus BAC clone RP24-490D10 from chromosom... 40 6.4
31gb|AC113016.7| Mus musculus chromosome 9, clone RP23-181L13, com... 40 6.4
32emb|AL589702.8| Human DNA sequence from clone RP5-907A6 on chrom... 40 6.4
33emb|AL590416.4| Human DNA sequence from clone RP11-89C21 on chro... 40 6.4
34ref|XM_776124.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.4
35emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.4
36emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 6.4
37emb|AL353014.1|SPAP7G5 S.pombe chromosome I plasmid p7G5 40 6.4
38emb|AL132964.2|ATT9C5 Arabidopsis thaliana DNA chromosome 3, BAC... 40 6.4
39emb|BX649355.3| Zebrafish DNA sequence from clone DKEYP-33C10 in... 40 6.4
40gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Can... 40 6.4
41dbj|AK220276.1| Mus musculus mRNA for mKIAA4017 protein 40 6.4
42gb|AF396665.1| Mus musculus dosal neuron-tube nuclear protein (D... 40 6.4
43gb|AC026392.7| Homo sapiens chromosome 10 clone RP11-238C10, com... 40 6.4
44gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
45dbj|AK155077.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 6.4
46dbj|AK163326.1| Mus musculus 2 cells egg cDNA, RIKEN full-length... 40 6.4
47emb|BX323065.6| Zebrafish DNA sequence from clone DKEYP-68F6 in ... 40 6.4
48dbj|AK010537.1| Mus musculus ES cells cDNA, RIKEN full-length en... 40 6.4
49ref|NM_001019739.1| Schizosaccharomyces pombe 972h- hypothetical... 40 6.4
50dbj|AK017321.1| Mus musculus 6 days neonate head cDNA, RIKEN ful... 40 6.4
51dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
52gb|AC020709.4|AC020709 Homo sapiens clone RP11-425F18, complete ... 40 6.4
53gb|AC114603.15| Mus musculus chromosome 1, clone RP23-355E19, co... 40 6.4
54emb|BX005284.12| Zebrafish DNA sequence from clone DKEY-23L19 in... 40 6.4
55emb|BX822083.1|CNS0A60D Arabidopsis thaliana Full-length cDNA Co... 40 6.4
56gb|AC012329.5|AC012329 Arabidopsis thaliana chromosome 1 BAC T1G... 40 6.4
57gb|AC005052.2|AC005052 Homo sapiens BAC clone CTB-38K21 from Xq2... 40 6.4
58gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
59dbj|AK185592.1| Mus musculus cDNA, clone:Y0G0134J12, strand:plus... 40 6.4
60emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 i... 40 6.4
61emb|BX511259.14| Zebrafish DNA sequence from clone CH211-125E6 i... 40 6.4
62gb|L04258.1|BETIMSPEC Corynebacteriophage beta immunity-specific... 40 6.4 
>ref|XM_479973.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3689

 Score =  109 bits (55), Expect = 8e-21
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                       
Query: 107 gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 166
           |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| |||
Sbjct: 706 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 765

                                                  
Query: 167 ggatggggcacagctgttagccgtggttactcttctagg 205
           || ||||| ||| || ||||||||||||| |||||||||
Sbjct: 766 gggtggggtacaactcttagccgtggttattcttctagg 804



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 147/178 (82%), Gaps = 4/178 (2%)
 Strand = Plus / Plus

                                                                        
Query: 302  agaagcaggagtagagagcgaggtagagggagaagcagaagtcgaagtcggagtccttac 361
            ||||||||||| | || |||||||||||| |||||||||||  ||||  | |||||||| 
Sbjct: 907  agaagcaggagcatagggcgaggtagaggtagaagcagaagcagaagcagaagtccttat 966

                                                                        
Query: 362  tt---tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttct 418
            ||   ||||||||| ||||| ||||||| ||||||| |||||  ||||||||||||| ||
Sbjct: 967  ttcagtgaccgtggatctgaatggagggttgagagaagcagatcatctggaggacctgct 1026

                                                                      
Query: 419  ttgctctgcagaga-tttacagctggtagatgcagaagaggcttgcattgcaggttcc 475
             | | ||| || || |||  |||||||||||||||||||||||   ||||||||||||
Sbjct: 1027 cttccctgtagggattttgtagctggtagatgcagaagaggctcaaattgcaggttcc 1084
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  109 bits (55), Expect = 8e-21
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                           
Query: 107     gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 166
               |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| |||
Sbjct: 2016923 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 2016982

                                                      
Query: 167     ggatggggcacagctgttagccgtggttactcttctagg 205
               || ||||| ||| || ||||||||||||| |||||||||
Sbjct: 2016983 gggtggggtacaactcttagccgtggttattcttctagg 2017021



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 147/178 (82%), Gaps = 4/178 (2%)
 Strand = Plus / Plus

                                                                           
Query: 302     agaagcaggagtagagagcgaggtagagggagaagcagaagtcgaagtcggagtccttac 361
               ||||||||||| | || |||||||||||| |||||||||||  ||||  | |||||||| 
Sbjct: 2017414 agaagcaggagcatagggcgaggtagaggtagaagcagaagcagaagcagaagtccttat 2017473

                                                                           
Query: 362     tt---tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttct 418
               ||   ||||||||| ||||| ||||||| ||||||| |||||  ||||||||||||| ||
Sbjct: 2017474 ttcagtgaccgtggatctgaatggagggttgagagaagcagatcatctggaggacctgct 2017533

                                                                         
Query: 419     ttgctctgcagaga-tttacagctggtagatgcagaagaggcttgcattgcaggttcc 475
                | | ||| || || |||  |||||||||||||||||||||||   ||||||||||||
Sbjct: 2017534 cttccctgtagggattttgtagctggtagatgcagaagaggctcaaattgcaggttcc 2017591
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>dbj|AP003896.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1613_G04
          Length = 135357

 Score =  109 bits (55), Expect = 8e-21
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                         
Query: 107   gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 166
             |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| |||
Sbjct: 10453 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 10512

                                                    
Query: 167   ggatggggcacagctgttagccgtggttactcttctagg 205
             || ||||| ||| || ||||||||||||| |||||||||
Sbjct: 10513 gggtggggtacaactcttagccgtggttattcttctagg 10551



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 147/178 (82%), Gaps = 4/178 (2%)
 Strand = Plus / Plus

                                                                         
Query: 302   agaagcaggagtagagagcgaggtagagggagaagcagaagtcgaagtcggagtccttac 361
             ||||||||||| | || |||||||||||| |||||||||||  ||||  | |||||||| 
Sbjct: 10944 agaagcaggagcatagggcgaggtagaggtagaagcagaagcagaagcagaagtccttat 11003

                                                                         
Query: 362   tt---tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttct 418
             ||   ||||||||| ||||| ||||||| ||||||| |||||  ||||||||||||| ||
Sbjct: 11004 ttcagtgaccgtggatctgaatggagggttgagagaagcagatcatctggaggacctgct 11063

                                                                       
Query: 419   ttgctctgcagaga-tttacagctggtagatgcagaagaggcttgcattgcaggttcc 475
              | | ||| || || |||  |||||||||||||||||||||||   ||||||||||||
Sbjct: 11064 cttccctgtagggattttgtagctggtagatgcagaagaggctcaaattgcaggttcc 11121
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>dbj|AP005620.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0680F05
          Length = 185495

 Score =  109 bits (55), Expect = 8e-21
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                          
Query: 107    gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 166
              |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| |||
Sbjct: 142121 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 142180

                                                     
Query: 167    ggatggggcacagctgttagccgtggttactcttctagg 205
              || ||||| ||| || ||||||||||||| |||||||||
Sbjct: 142181 gggtggggtacaactcttagccgtggttattcttctagg 142219



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 147/178 (82%), Gaps = 4/178 (2%)
 Strand = Plus / Plus

                                                                          
Query: 302    agaagcaggagtagagagcgaggtagagggagaagcagaagtcgaagtcggagtccttac 361
              ||||||||||| | || |||||||||||| |||||||||||  ||||  | |||||||| 
Sbjct: 142612 agaagcaggagcatagggcgaggtagaggtagaagcagaagcagaagcagaagtccttat 142671

                                                                          
Query: 362    tt---tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttct 418
              ||   ||||||||| ||||| ||||||| ||||||| |||||  ||||||||||||| ||
Sbjct: 142672 ttcagtgaccgtggatctgaatggagggttgagagaagcagatcatctggaggacctgct 142731

                                                                        
Query: 419    ttgctctgcagaga-tttacagctggtagatgcagaagaggcttgcattgcaggttcc 475
               | | ||| || || |||  |||||||||||||||||||||||   ||||||||||||
Sbjct: 142732 cttccctgtagggattttgtagctggtagatgcagaagaggctcaaattgcaggttcc 142789
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>dbj|AK100455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091E18, full
           insert sequence
          Length = 3689

 Score =  109 bits (55), Expect = 8e-21
 Identities = 88/99 (88%)
 Strand = Plus / Plus

                                                                       
Query: 107 gaaaagacaactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgat 166
           |||||| || ||||||||||||||||||||||| |||| ||||||||||| ||||| |||
Sbjct: 706 gaaaaggcagctggtaaccaaggtatgagcagatatgcagatgacagaaggcgtggtgat 765

                                                  
Query: 167 ggatggggcacagctgttagccgtggttactcttctagg 205
           || ||||| ||| || ||||||||||||| |||||||||
Sbjct: 766 gggtggggtacaactcttagccgtggttattcttctagg 804



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 147/178 (82%), Gaps = 4/178 (2%)
 Strand = Plus / Plus

                                                                        
Query: 302  agaagcaggagtagagagcgaggtagagggagaagcagaagtcgaagtcggagtccttac 361
            ||||||||||| | || |||||||||||| |||||||||||  ||||  | |||||||| 
Sbjct: 907  agaagcaggagcatagggcgaggtagaggtagaagcagaagcagaagcagaagtccttat 966

                                                                        
Query: 362  tt---tgaccgtggttctgattggagggctgagagaggcagaatatctggaggaccttct 418
            ||   ||||||||| ||||| ||||||| ||||||| |||||  ||||||||||||| ||
Sbjct: 967  ttcagtgaccgtggatctgaatggagggttgagagaagcagatcatctggaggacctgct 1026

                                                                      
Query: 419  ttgctctgcagaga-tttacagctggtagatgcagaagaggcttgcattgcaggttcc 475
             | | ||| || || |||  |||||||||||||||||||||||   ||||||||||||
Sbjct: 1027 cttccctgtagggattttgtagctggtagatgcagaagaggctcaaattgcaggttcc 1084
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>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence
          Length = 144792

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 126/151 (83%), Gaps = 3/151 (1%)
 Strand = Plus / Minus

                                                                         
Query: 114   caactggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgatggatggg 173
             |||||||||||||||| |  | |||| |||| ||||||||||||||||| ||||||||||
Sbjct: 81236 caactggtaaccaaggcacaaacagatatgcagatgacagaagacgtggtgatggatggg 81177

                                                                         
Query: 174   gcacagctgttagccgtggttactctt---ctagggtgtcgtccggtccagatgcatgga 230
             | ||||||  ||| |||| ||| ||||   |||||| | | || | ||||||||||||||
Sbjct: 81176 gtacagctcctagtcgtgattattcttctgctagggcgccttctgatccagatgcatgga 81117

                                            
Query: 231   agcagcgcactcgcagtccatctccaagagg 261
              ||||||||  || |||||||||||||||||
Sbjct: 81116 ggcagcgcagccgaagtccatctccaagagg 81086



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                 
Query: 364   tgaccgtggttctgattggagggctgagagaggcagaatatctggaggacct 415
             ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 80374 tgaccgtggatctgagtggagggttgagagaggcagaacatctggaggacct 80323



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 301   cagaagcaggagtagagagcgaggtagagggagaagcagaagtc 344
             |||||||||||||| || |||||| ||||| || ||||||||||
Sbjct: 80428 cagaagcaggagtatagggcgaggcagaggcaggagcagaagtc 80385
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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative
             Cf-2, fertilization-independent endosperm proteins,
             hypothetical protein, putative non-LTR retroelement
             reverse transcriptase, OCL5 protein, tryptophan synthase
             beta-subunit, hypothetical proteins, putative AP
             endonuclease, putative RNA polymerase II complex component
             SRB7, putative beta-1,3-glucanase, hypothetical protein,
             TNP2-like protein, hypothetical protein, putative
             phosphate/phosphoenolpyruvate translocator, putative
             protein, hypothetical proteins, putative
             galactosyltransferase family, hypothetical protein,
             putative cytochrome P450 family, putative lipid transfer
             protein, putative photoreceptor-interacting protein, and
             hypothetical protein genes, complete cds; and hypothetical
             protein gene, partial cds
          Length = 202197

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 123/148 (83%), Gaps = 3/148 (2%)
 Strand = Plus / Minus

                                                                         
Query: 117   ctggtaaccaaggtatgagcagaaatgctgatgacagaagacgtggcgatggatggggca 176
             ||||||||||||| | || |||| |||| ||||| ||||||||||| ||||||||||| |
Sbjct: 89919 ctggtaaccaaggcacgaacagatatgcagatgatagaagacgtggtgatggatggggta 89860

                                                                         
Query: 177   cagctgttagccgtggttactcttcta---gggtgtcgtccggtccagatgcatggaagc 233
             |||||  ||| |||||||| |||||||   ||| | | || | |||||||||||||| ||
Sbjct: 89859 cagctcctagtcgtggttattcttctactagggcgccttctgatccagatgcatggaggc 89800

                                         
Query: 234   agcgcactcgcagtccatctccaagagg 261
             || |||  || |||||||||||||||||
Sbjct: 89799 agtgcagccgaagtccatctccaagagg 89772



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                             
Query: 368   cgtggttctgattggagggctgagagaggcagaatatctggaggacct 415
             ||||| ||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 89190 cgtggatctgagtggagggttgagagaggcagaacatctggaggacct 89143



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 301   cagaagcaggagtagagagcgaggtagagggagaagcagaagtc 344
             |||||||||||||| || |||||||||||| || ||||||||||
Sbjct: 89248 cagaagcaggagtatagggcgaggtagaggcaggagcagaagtc 89205
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>gb|AC006296.8|AC006296 Homo sapiens chromosome 4 clone C0153I05 map 4p16.3, complete sequence
          Length = 193930

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 379    ttggagggctgagagaggcaga 400
              ||||||||||||||||||||||
Sbjct: 160333 ttggagggctgagagaggcaga 160312
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>ref|XM_854149.1| PREDICTED: Canis familiaris similar to helicase, lymphoid-specific,
           transcript variant 3 (LOC486809), mRNA
          Length = 1161

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 322 aggtagagggagaagcagaag 342
           |||||||||||||||||||||
Sbjct: 134 aggtagagggagaagcagaag 154
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>gb|AC090445.3| Canis familiaris clone RP81-55A4, complete sequence
          Length = 163762

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 321   gaggtagagggagaagcagaa 341
             |||||||||||||||||||||
Sbjct: 50797 gaggtagagggagaagcagaa 50777
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>emb|BX538351.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4
          Length = 307050

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 327    gagggagaagcagaagtcgaagtcggagt 355
              |||| |||||||||||||||||| |||||
Sbjct: 205719 gaggtagaagcagaagtcgaagtgggagt 205747
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>ref|NM_142240.1| Drosophila melanogaster CG14876-RA (CG14876), mRNA
          Length = 1263

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 ggagaagcagaagtcgaagtcggag 354
           ||||||||||||| |||||||||||
Sbjct: 233 ggagaagcagaagccgaagtcggag 209
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>ref|XM_627626.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd6_2740),
           partial mRNA
          Length = 1035

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 327 gagggagaagcagaagtcgaagtcggagt 355
           |||| |||||||||||||||||| |||||
Sbjct: 725 gaggtagaagcagaagtcgaagtgggagt 753
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>ref|XM_662802.1| Cryptosporidium hominis TU502 splicing factor (Chro.60316), partial
           mRNA
          Length = 993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 327 gagggagaagcagaagtcgaagtcggagt 355
           |||| |||||||||||||||||| |||||
Sbjct: 683 gaggtagaagcagaagtcgaagtgggagt 711
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>gb|BT022628.1| Drosophila melanogaster IP11992 full insert cDNA
          Length = 1164

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 ggagaagcagaagtcgaagtcggag 354
           ||||||||||||| |||||||||||
Sbjct: 517 ggagaagcagaagccgaagtcggag 493
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>gb|BT022492.1| Drosophila melanogaster IP11792 full insert cDNA
          Length = 1123

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 330 ggagaagcagaagtcgaagtcggag 354
           ||||||||||||| |||||||||||
Sbjct: 478 ggagaagcagaagccgaagtcggag 454
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>gb|AC010122.7|AC010122 Drosophila melanogaster, chromosome 3R, region 89A-89A, BAC clone
             BACR06B08, complete sequence
          Length = 151447

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 330   ggagaagcagaagtcgaagtcggag 354
             ||||||||||||| |||||||||||
Sbjct: 78369 ggagaagcagaagccgaagtcggag 78393
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>gb|AE003710.2| Drosophila melanogaster chromosome 3R, section 48 of 118 of the complete
              sequence
          Length = 224071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 330    ggagaagcagaagtcgaagtcggag 354
              ||||||||||||| |||||||||||
Sbjct: 178612 ggagaagcagaagccgaagtcggag 178636
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>ref|NM_114803.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G49430
           mRNA, complete cds
          Length = 1097

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 agaagcagaagtcgaagtcg 351
           ||||||||||||||||||||
Sbjct: 712 agaagcagaagtcgaagtcg 731
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>gb|DQ207368.1| Homo sapiens pentaxin-related protein PTX3 (PTX3) gene, complete cds
          Length = 10172

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 415  ttctttgctctgcagagatt 434
            ||||||||||||||||||||
Sbjct: 7821 ttctttgctctgcagagatt 7840
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>gb|AC110896.8| Mus musculus chromosome 3, clone RP24-127P11, complete sequence
          Length = 151699

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    gagagcgaggtagagggaga 334
              ||||||||||||||||||||
Sbjct: 142067 gagagcgaggtagagggaga 142048
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>gb|BC028656.1| Mus musculus RIKEN cDNA 2410018C17 gene, mRNA (cDNA clone MGC:41565
           IMAGE:1244982), complete cds
          Length = 1748

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatctccaagaggaggtgc 267
           ||||||||||||||||||||
Sbjct: 720 ccatctccaagaggaggtgc 739
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>gb|BC016596.1| Mus musculus RIKEN cDNA 2410018C17 gene, mRNA (cDNA clone MGC:27806
           IMAGE:3257498), complete cds
          Length = 1458

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatctccaagaggaggtgc 267
           ||||||||||||||||||||
Sbjct: 425 ccatctccaagaggaggtgc 444
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>ref|NM_178390.2| Mus musculus RIKEN cDNA 2410018C17 gene (2410018C17Rik), mRNA
          Length = 1748

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatctccaagaggaggtgc 267
           ||||||||||||||||||||
Sbjct: 720 ccatctccaagaggaggtgc 739
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 310     gagtagagagcgaggtagagggagaagc 337
               |||||||||| |||| ||||||||||||
Sbjct: 3502770 gagtagagagagagggagagggagaagc 3502797
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>gb|AC147707.5| Canis Familiaris, clone XX-10C7, complete sequence
          Length = 199690

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 313   tagagagcgaggtagagggagaagcaga 340
             ||||||| |||| |||||||||||||||
Sbjct: 70715 tagagagagaggcagagggagaagcaga 70688
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>gb|AC107741.15| Mus musculus chromosome 3, clone RP23-335P23, complete sequence
          Length = 212995

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 315  gagagcgaggtagagggaga 334
            ||||||||||||||||||||
Sbjct: 8678 gagagcgaggtagagggaga 8659
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>ref|XM_981480.1| PREDICTED: Mus musculus similar to Y32G9A.5 (LOC675383), mRNA
          Length = 555

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 381 ggagggctgagagaggcagaatatctggagga 412
           ||||| ||||||||||||||||| ||| ||||
Sbjct: 4   ggaggcctgagagaggcagaatacctgcagga 35
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>emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in linkage group 16,
             complete sequence
          Length = 149652

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cagatgcatggaagcagcgc 238
             ||||||||||||||||||||
Sbjct: 22849 cagatgcatggaagcagcgc 22830
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>gb|AC132233.4| Mus musculus BAC clone RP24-490D10 from chromosome 5, complete sequence
          Length = 160438

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    ccatctccaagaggaggtgc 267
              ||||||||||||||||||||
Sbjct: 121082 ccatctccaagaggaggtgc 121063
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>gb|AC113016.7| Mus musculus chromosome 9, clone RP23-181L13, complete sequence
          Length = 213244

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tgcatgctcctagaatggct 64
              ||||||||||||||||||||
Sbjct: 130578 tgcatgctcctagaatggct 130559
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>emb|AL589702.8| Human DNA sequence from clone RP5-907A6 on chromosome 1, complete
             sequence
          Length = 107103

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 382   gagggctgagagaggcagaa 401
             ||||||||||||||||||||
Sbjct: 14166 gagggctgagagaggcagaa 14147
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>emb|AL590416.4| Human DNA sequence from clone RP11-89C21 on chromosome 10p13-14
             Contains the 3' end of the gene for a protein related to
             the N terminus of tre (RNTRE) (KIAA0019), gene FLJ34168, a
             novel gene and a CpG island, complete sequence
          Length = 171026

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 416   tctttgctctgcagagattt 435
             ||||||||||||||||||||
Sbjct: 56261 tctttgctctgcagagattt 56280
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>ref|XM_776124.1| PREDICTED: Strongylocentrotus purpuratus similar to natural
            killer-tumor recognition sequence isoform a (LOC575746),
            mRNA
          Length = 3774

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  gtagagggagaagcagaagt 343
            ||||||||||||||||||||
Sbjct: 1541 gtagagggagaagcagaagt 1560
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    cgtggcgatggatggggcac 177
              ||||||||||||||||||||
Sbjct: 556554 cgtggcgatggatggggcac 556573
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>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              1/8
          Length = 348517

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    tggaagcagcgcactcgcag 246
              ||||||||||||||||||||
Sbjct: 181114 tggaagcagcgcactcgcag 181133
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>emb|AL353014.1|SPAP7G5 S.pombe chromosome I plasmid p7G5
          Length = 23037

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    taaagcgtcatctgaaaggt 44
             ||||||||||||||||||||
Sbjct: 17304 taaagcgtcatctgaaaggt 17323
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>emb|AL132964.2|ATT9C5 Arabidopsis thaliana DNA chromosome 3, BAC clone T9C5
          Length = 104204

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 332  agaagcagaagtcgaagtcg 351
            ||||||||||||||||||||
Sbjct: 9926 agaagcagaagtcgaagtcg 9945
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>emb|BX649355.3| Zebrafish DNA sequence from clone DKEYP-33C10 in linkage group 4 Contains
              a novel gene and five CpG islands, complete sequence
          Length = 129928

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    cagatgcatggaagcagcgc 238
              ||||||||||||||||||||
Sbjct: 108084 cagatgcatggaagcagcgc 108065
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>gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164519

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   ttctttgctctgcagagatt 434
             ||||||||||||||||||||
Sbjct: 69820 ttctttgctctgcagagatt 69839
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>dbj|AK220276.1| Mus musculus mRNA for mKIAA4017 protein
          Length = 8219

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatctccaagaggaggtgc 267
           ||||||||||||||||||||
Sbjct: 636 ccatctccaagaggaggtgc 655
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>gb|AF396665.1| Mus musculus dosal neuron-tube nuclear protein (Dntnp) mRNA,
           complete cds
          Length = 1209

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatctccaagaggaggtgc 267
           ||||||||||||||||||||
Sbjct: 422 ccatctccaagaggaggtgc 441
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>gb|AC026392.7| Homo sapiens chromosome 10 clone RP11-238C10, complete sequence
          Length = 177829

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    tctttgctctgcagagattt 435
              ||||||||||||||||||||
Sbjct: 139384 tctttgctctgcagagattt 139403
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>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12,
            complete sequence
          Length = 103330

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 310  gagtagagagcgaggtagagggagaagc 337
            |||||||||| |||| ||||||||||||
Sbjct: 7605 gagtagagagagagggagagggagaagc 7578
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>dbj|AK155077.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630119M04
            product:Dosal neuron-tube nuclear protein homolog [Mus
            musculus], full insert sequence
          Length = 2113

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  ccatctccaagaggaggtgc 267
            ||||||||||||||||||||
Sbjct: 1113 ccatctccaagaggaggtgc 1132
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>dbj|AK163326.1| Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library,
           clone:B020014G09 product:Dosal neuron-tube nuclear
           protein, full insert sequence
          Length = 1992

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatctccaagaggaggtgc 267
           ||||||||||||||||||||
Sbjct: 972 ccatctccaagaggaggtgc 991
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>emb|BX323065.6| Zebrafish DNA sequence from clone DKEYP-68F6 in linkage group 10,
             complete sequence
          Length = 132064

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cagatgcatggaagcagcgc 238
             ||||||||||||||||||||
Sbjct: 32528 cagatgcatggaagcagcgc 32509
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>dbj|AK010537.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410018C17 product:HYPOTHETICAL 43.0 KDA PROTEIN
           homolog [Mus musculus], full insert sequence
          Length = 1939

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatctccaagaggaggtgc 267
           ||||||||||||||||||||
Sbjct: 936 ccatctccaagaggaggtgc 955
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>ref|NM_001019739.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAP7G5.06),
           partial mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 25  taaagcgtcatctgaaaggt 44
           ||||||||||||||||||||
Sbjct: 239 taaagcgtcatctgaaaggt 258
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>dbj|AK017321.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched
            library, clone:5430419M09 product:hypothetical protein,
            full insert sequence
          Length = 2345

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  ccatctccaagaggaggtgc 267
            ||||||||||||||||||||
Sbjct: 1345 ccatctccaagaggaggtgc 1364
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 310     gagtagagagcgaggtagagggagaagc 337
               |||||||||| |||| ||||||||||||
Sbjct: 3502881 gagtagagagagagggagagggagaagc 3502908
to top
>gb|AC020709.4|AC020709 Homo sapiens clone RP11-425F18, complete sequence
          Length = 184104

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    gagggctgagagaggcagaa 401
              ||||||||||||||||||||
Sbjct: 122376 gagggctgagagaggcagaa 122357
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>gb|AC114603.15| Mus musculus chromosome 1, clone RP23-355E19, complete sequence
          Length = 260698

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 381    ggagggctgagagaggcagaatatctggagga 412
              ||||| ||||||||||||||||| ||| ||||
Sbjct: 177302 ggaggcctgagagaggcagaatacctgcagga 177333
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>emb|BX005284.12| Zebrafish DNA sequence from clone DKEY-23L19 in linkage group 14,
              complete sequence
          Length = 213404

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    cagatgcatggaagcagcgc 238
              ||||||||||||||||||||
Sbjct: 100491 cagatgcatggaagcagcgc 100472
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>emb|BX822083.1|CNS0A60D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB10ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1094

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 332 agaagcagaagtcgaagtcg 351
           ||||||||||||||||||||
Sbjct: 712 agaagcagaagtcgaagtcg 731
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>gb|AC012329.5|AC012329 Arabidopsis thaliana chromosome 1 BAC T1G12 genomic sequence, complete
             sequence
          Length = 80367

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   agaagcagaagtcgaagtcg 351
             ||||||||||||||||||||
Sbjct: 55066 agaagcagaagtcgaagtcg 55085
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>gb|AC005052.2|AC005052 Homo sapiens BAC clone CTB-38K21 from Xq23, complete sequence
          Length = 134210

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    tggctgaagaggggcataat 79
             ||||||||||||||||||||
Sbjct: 39033 tggctgaagaggggcataat 39052
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>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0026H19, complete sequence
          Length = 150620

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 310   gagtagagagcgaggtagagggagaagc 337
             |||||||||| |||| ||||||||||||
Sbjct: 20423 gagtagagagagagggagagggagaagc 20450
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>dbj|AK185592.1| Mus musculus cDNA, clone:Y0G0134J12, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000065119, based on BLAT search
          Length = 411

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 248 ccatctccaagaggaggtgc 267
           ||||||||||||||||||||
Sbjct: 263 ccatctccaagaggaggtgc 282
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>emb|BX649622.7| Zebrafish DNA sequence from clone CH211-128B10 in linkage group 18,
             complete sequence
          Length = 180248

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cagatgcatggaagcagcgc 238
             ||||||||||||||||||||
Sbjct: 21441 cagatgcatggaagcagcgc 21422
to top
>emb|BX511259.14| Zebrafish DNA sequence from clone CH211-125E6 in linkage group 9,
              complete sequence
          Length = 182412

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    cagatgcatggaagcagcgc 238
              ||||||||||||||||||||
Sbjct: 178056 cagatgcatggaagcagcgc 178075
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>gb|L04258.1|BETIMSPEC Corynebacteriophage beta immunity-specific proteins Beta241, Beta201,
            Beta286, and Beta371 genes, complete coding regions
          Length = 3828

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  tggaagcagcgcactcgcag 246
            ||||||||||||||||||||
Sbjct: 1062 tggaagcagcgcactcgcag 1081


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,115,386
Number of Sequences: 3902068
Number of extensions: 4115386
Number of successful extensions: 76241
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75995
Number of HSP's gapped (non-prelim): 236
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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