ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl27c03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04, complete sequence Length = 143301 Score = 61.9 bits (31), Expect = 1e-06 Identities = 74/84 (88%), Gaps = 7/84 (8%) Strand = Plus / Minus Query: 150 gtgaggggagagg---aggcagccgctctcatctcgccttcctcttttgcatcctcgtga 206 ||||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| Sbjct: 2113 gtgaggggagaggcagaggcagccgctctcatttcgtcttcctc-tttgc-tcctcgt-- 2058 Query: 207 gatgtgcgcgcattgctgccgctg 230 ||||||||||||||||||| |||| Sbjct: 2057 gatgtgcgcgcattgctgctgctg 2034
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 1e-06 Identities = 74/84 (88%), Gaps = 7/84 (8%) Strand = Plus / Minus Query: 150 gtgaggggagagg---aggcagccgctctcatctcgccttcctcttttgcatcctcgtga 206 ||||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||| Sbjct: 20271480 gtgaggggagaggcagaggcagccgctctcatttcgtcttcctc-tttgc-tcctcgt-- 20271425 Query: 207 gatgtgcgcgcattgctgccgctg 230 ||||||||||||||||||| |||| Sbjct: 20271424 gatgtgcgcgcattgctgctgctg 20271401
>emb|CR847979.6| Zebrafish DNA sequence from clone CH211-195H14 in linkage group 15, complete sequence Length = 117096 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Minus Query: 220 tgctgccgctgctgctcaagctg 242 ||||||||||||||||||||||| Sbjct: 100871 tgctgccgctgctgctcaagctg 100849
>ref|XM_680024.1| PREDICTED: Danio rerio similar to MLL (LOC557048), mRNA Length = 5715 Score = 46.1 bits (23), Expect = 0.075 Identities = 23/23 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaagctg 242 ||||||||||||||||||||||| Sbjct: 663 tgctgccgctgctgctcaagctg 685
>emb|AJ564180.1|FVE564180 Fragaria vesca microsatellite DNA, clone EMFv022 Length = 267 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 297 ccgccgctccttcaaaacccta 318 |||||||||||||||||||||| Sbjct: 158 ccgccgctccttcaaaacccta 179
>emb|AL139220.13| Human DNA sequence from clone RP5-1198O20 on chromosome 1p32.3-34.2, complete sequence Length = 133728 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 gtgagtttggtgagtgtggca 127 ||||||||||||||||||||| Sbjct: 33519 gtgagtttggtgagtgtggca 33539
>gb|AC005038.5|AC005038 Homo sapiens BAC clone RP11-486I22 from 1, complete sequence Length = 190744 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 gtgagtttggtgagtgtggca 127 ||||||||||||||||||||| Sbjct: 72386 gtgagtttggtgagtgtggca 72366
>gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR07I18, complete sequence Length = 159413 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 cgcattgctgccgctgctgct 235 ||||||||||||||||||||| Sbjct: 102971 cgcattgctgccgctgctgct 102951
>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the complete sequence Length = 242618 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 215 cgcattgctgccgctgctgct 235 ||||||||||||||||||||| Sbjct: 84309 cgcattgctgccgctgctgct 84289
>ref|XM_706819.1| Candida albicans SC5314 hypothetical protein (CaO19.8025), mRNA Length = 1323 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 363 tgctgccgctgctgctcaag 382
>ref|XM_706790.1| Candida albicans SC5314 hypothetical protein (CaO19.395), mRNA Length = 1323 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 363 tgctgccgctgctgctcaag 382
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 5690611 tgctgccgctgctgctcaag 5690630
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ggtcctgctcgccgccgctc 305 |||||||||||||||||||| Sbjct: 28515204 ggtcctgctcgccgccgctc 28515185
>gb|AC079780.6| Homo sapiens BAC clone RP11-379L16 from 7, complete sequence Length = 54379 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ggtggggcgcgtcgcccgcc 38 |||||||||||||||||||| Sbjct: 35500 ggtggggcgcgtcgcccgcc 35481
>emb|AL451056.11| Human DNA sequence from clone RP13-449N13 on chromosome 10, complete sequence Length = 31951 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 tgagtgtggcagggaggagc 136 |||||||||||||||||||| Sbjct: 8759 tgagtgtggcagggaggagc 8740
>emb|AL450426.7| Human DNA sequence from clone RP11-317C20 on chromosome 9 Contains five novel olfactory (seven transmembrane helix) receptor genes, a pseudogene similar to part of novel olfactory (seven transmembrane helix) receptor and a CpG island, complete sequence Length = 136002 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 taggaaagaggaggcaccgt 104 |||||||||||||||||||| Sbjct: 117721 taggaaagaggaggcaccgt 117740
>gb|BT009093.1| Triticum aestivum clone wkm2c.pk005.b15:fis, full insert mRNA sequence Length = 1018 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaagctga 243 ||||| |||||||||||||||||| Sbjct: 268 tgctgtcgctgctgctcaagctga 291
>emb|X12455.1|AVDHLAAT A. vinelandii gene for dihydrolipoyltransacetylase, E2 component of pyruvate dehydrogenase complex (EC 2.3.1.12) Length = 2142 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 1551 tgctgccgctgctgctcaag 1570
>emb|AJ414401.1|CFA414401 Canis familiaris rcv1 gene for recoverin Length = 4523 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 752 tgctgccgctgctgctcaag 771
>gb|AF376033.1| Vibrio vulnificus isolate IF Vv11 cytolysin (vvhA) gene, partial cds Length = 640 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 20 gcgtgagtttggtgagtgtg 39
>gb|AF376032.1| Vibrio vulnificus isolate IF Vv10 cytolysin (vvhA) gene, partial cds Length = 659 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 29 gcgtgagtttggtgagtgtg 48
>gb|AF376031.1| Vibrio vulnificus isolate IF Vv24 cytolysin (vvhA) gene, partial cds Length = 656 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 29 gcgtgagtttggtgagtgtg 48
>gb|AF376030.1| Vibrio vulnificus isolate IF Vv18 cytolysin (vvhA) gene, partial cds Length = 651 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 21 gcgtgagtttggtgagtgtg 40
>gb|AF376029.1| Vibrio vulnificus isolate CNRVC 970121 cytolysin (vvhA) gene, partial cds Length = 623 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 22 gcgtgagtttggtgagtgtg 41
>gb|AF376028.1| Vibrio vulnificus isolate CNRVC 970120 cytolysin (vvhA) gene, partial cds Length = 603 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 3 gcgtgagtttggtgagtgtg 22
>gb|AF376027.1| Vibrio vulnificus strain CIP 75.4T cytolysin (vvhA) gene, partial cds Length = 622 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 22 gcgtgagtttggtgagtgtg 41
>gb|AC022706.7| Homo sapiens chromosome , clone RP11-47L3, complete sequence Length = 162474 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 gtgagtttggtgagtgtggcaggg 130 |||||| ||||||||||||||||| Sbjct: 5228 gtgagtgtggtgagtgtggcaggg 5251
>gb|AC022916.11| Homo sapiens chromosome 17, clone RP11-799D4, complete sequence Length = 215786 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 107 gtgagtttggtgagtgtggcaggg 130 |||||| ||||||||||||||||| Sbjct: 144597 gtgagtgtggtgagtgtggcaggg 144620
>emb|BX933856.2| Gallus gallus finished cDNA, clone ChEST1010g4 Length = 796 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 215 cgcattgctgccgctgctgctcaagctg 242 ||||||||||| |||||||||| ||||| Sbjct: 234 cgcattgctgctgctgctgctccagctg 261
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cgcctgcgtcgtcgccgccg 346 |||||||||||||||||||| Sbjct: 28773294 cgcctgcgtcgtcgccgccg 28773275 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ctgctcgccgccgctccttc 309 |||||||||||||||||||| Sbjct: 20251908 ctgctcgccgccgctccttc 20251927
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ggtcctgctcgccgccgctc 305 |||||||||||||||||||| Sbjct: 28606528 ggtcctgctcgccgccgctc 28606509
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 ggtcctgctcgccgccgctc 305 |||||||||||||||||||| Sbjct: 109334 ggtcctgctcgccgccgctc 109315
>dbj|AB124803.1| Vibrio vulnificus vvhB, vvhA genes for hypothetical protein, hemolysin/cytolysin, complete cds, strain:CDC B3547 Length = 1924 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 1177 gcgtgagtttggtgagtgtg 1196
>dbj|AP005466.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1212_H09 Length = 129040 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 ctgctcgccgccgctccttc 309 |||||||||||||||||||| Sbjct: 65418 ctgctcgccgccgctccttc 65437
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 ctggtcctgctcgccgccgc 303 |||||||||||||||||||| Sbjct: 614597 ctggtcctgctcgccgccgc 614578
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cgcctgcgtcgtcgccgccg 346 |||||||||||||||||||| Sbjct: 81069 cgcctgcgtcgtcgccgccg 81050
>dbj|AB158406.1| Triticum aestivum CCoAMT mRNA for putative caffeoyl CoA O-methyltransferase, partial cds Length = 875 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaagctga 243 ||||| |||||||||||||||||| Sbjct: 260 tgctgtcgctgctgctcaagctga 283
>dbj|AK105513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-F01, full insert sequence Length = 1253 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 327 cgcctgcgtcgtcgccgccg 346 |||||||||||||||||||| Sbjct: 763 cgcctgcgtcgtcgccgccg 782
>dbj|AK103705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136N14, full insert sequence Length = 4006 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 ggtcctgctcgccgccgctc 305 |||||||||||||||||||| Sbjct: 165 ggtcctgctcgccgccgctc 184
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 5468725 tgctgccgctgctgctcaag 5468744
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence Length = 1844853 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcgtgagtttggtgagtgtg 124 |||||||||||||||||||| Sbjct: 435384 gcgtgagtttggtgagtgtg 435403
>gb|DQ176000.1| Xenopus laevis RPGR ORF15 isoform mRNA, partial cds Length = 1845 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 ctcgccttcctcttttgcatcctc 202 |||||||||||||| ||||||||| Sbjct: 516 ctcgccttcctcttctgcatcctc 493
>gb|U49856.1|DVU49856 Drosophila virilis Kruppel gene, partial cds Length = 1623 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 gcgcgcattgctgccgctgc 231 |||||||||||||||||||| Sbjct: 1356 gcgcgcattgctgccgctgc 1337
>gb|L04943.1|YSAENO1A Candida albicans enolase (ENO1) gene, complete cds Length = 2647 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 891 tgctgccgctgctgctcaag 910
>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete sequence Length = 162090 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gtgaggggagaggaggcagc 169 |||||||||||||||||||| Sbjct: 124950 gtgaggggagaggaggcagc 124931
>gb|L10290.1|YSAENOLAS Candida albicans enolase (ENO1) gene, complete cds Length = 2018 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 512 tgctgccgctgctgctcaag 531
>gb|M93712.1|YSAENOLASE Candida albicans (clone lambda-C1.d) enolase mRNA, complete cds Length = 1323 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tgctgccgctgctgctcaag 239 |||||||||||||||||||| Sbjct: 363 tgctgccgctgctgctcaag 382 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,189,535 Number of Sequences: 3902068 Number of extensions: 3189535 Number of successful extensions: 82822 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82251 Number of HSP's gapped (non-prelim): 569 length of query: 351 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 329 effective length of database: 17,147,199,772 effective search space: 5641428724988 effective search space used: 5641428724988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
