>IRX4_HUMAN (P78413) Iroquois-class homeodomain protein IRX-4 (Iroquois|
           homeobox protein 4) (Homeodomain protein IRXA3)
          Length = 519

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 39  GPATEAAVT*SPSSVPFLLFPHSTLSPTHQNSPSTRLRH 155
           GPA  AAV+ +P++ P +  PHS     HQ+SP T LR+
Sbjct: 399 GPAAPAAVSSAPATSPSVALPHSGALDRHQDSPVTSLRN 437

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +2

Query: 77   FCALPPLSPLHTLPNTPK-----FPIHPSPPCLDSPDL 175
            FCA PP SPL  +P+  K     FP  P+PP ++S  L
Sbjct: 898  FCAKPPPSPLSPVPSVVKQIASQFPPPPTPPAMESQPL 935



 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +1

Query: 85   PSSSFPTPHSPQHTKIPHPPVSAMPGLS*PSLPCRAPQP 201
            PS  FP P        P PP S +P    P  P  +P P
Sbjct: 964  PSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTP 1002

>EFNB3_MOUSE (O35393) Ephrin-B3 precursor|
          Length = 340

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -2

Query: 183 RQARSGESRHGGDGWMGNFGVLGRVWSGERGGRAQKRGFT*PRPRWQGQLEQPF 22
           R+A+  ESRH G G  G  G LG    G  G R  + G      R  G  + PF
Sbjct: 254 RRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGTADPPF 307

>EFNB3_HUMAN (Q15768) Ephrin-B3 precursor (EPH-related receptor tyrosine kinase|
           ligand 8) (LERK-8) (EPH-related receptor transmembrane
           ligand ELK-L3)
          Length = 340

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/54 (37%), Positives = 24/54 (44%)
 Frame = -2

Query: 183 RQARSGESRHGGDGWMGNFGVLGRVWSGERGGRAQKRGFT*PRPRWQGQLEQPF 22
           R+A+  ESRH G G  G  G LG    G  G R  + G      R  G  + PF
Sbjct: 254 RRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIALRGGGAADPPF 307

>RS2_HUMAN (P15880) 40S ribosomal protein S2 (S4) (LLRep3 protein)|
          Length = 293

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/51 (39%), Positives = 21/51 (41%)
 Frame = -3

Query: 194 GARHGKLGQESPGMAETGGWGILVCWGECGVGKEEEGHRRGASRDRGLGGR 42
           GA  G  G   PGM   GG+      G  G G    G  RG  R RG G R
Sbjct: 6   GAAGGPGGPGGPGMGNRGGFR-----GGFGSGIRGRGRGRGRGRGRGRGAR 51

>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the|
           cerebellum 5)
          Length = 639

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +2

Query: 26  GCSNWPCHRGRGHVKPLFCALPPLSPLHTLPNTPKFPIHPSPPCL 160
           G  ++PC  G    +P     PP  PL   P+ P  P  P PP L
Sbjct: 108 GAGSYPCGGGSSGAQPS-APPPPAPPLPPTPSPPPPPPPPPPPAL 151

>CI079_HUMAN (Q6ZUB1) Protein C9orf79|
          Length = 1445

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +1

Query: 73  PLLCPSSS-------FPTPHSPQHTKIPHPPVSAMPGLS*PSLPCRAPQ 198
           PL CP++         P PH P  +  P PP S++ GL   S  C  PQ
Sbjct: 230 PLKCPATQPHVVFPPSPQPHGPLASS-PPPPDSSLAGLQCGSTTCPVPQ 277

>SPR2D_HUMAN (P22532) Small proline-rich protein 2D (SPR-2D) (Small proline-rich|
           protein II) (SPR-II)
          Length = 72

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 67  EAPLLCPSSSFPTPHSPQHTKIPHPPVSAMPGLS*PSLPCRAPQP 201
           + P  CPS   P P  PQ  +  +PPV+       PS PC+   P
Sbjct: 31  KCPEPCPSPKCPQPCPPQQCQQKYPPVT-------PSPPCQPKCP 68

>AMEL_TACAC (O97647) Amelogenin (Fragment)|
          Length = 121

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = +2

Query: 68  KPLFCALPPLSPLHTLPNTPK------FPIHPSPPCLDSPDL 175
           KP    + P +P+H +P  P+      FP+ P PP L  PDL
Sbjct: 74  KPTHRPIQPQAPVHPMPPMPQPQLPPMFPLQPLPPLL--PDL 113

>SPR2A_HUMAN (P35326) Small proline-rich protein 2A (SPR-2A) (2-1)|
          Length = 72

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 67  EAPLLCPSSSFPTPHSPQHTKIPHPPVSAMPGLS*PSLPCRAPQP 201
           + P  CP    P P  PQ  +  +PPV+       PS PC++  P
Sbjct: 31  KCPEPCPPPKCPQPCPPQQCQQKYPPVT-------PSPPCQSKYP 68

>P3C2A_PONPY (Q5RAY1) Phosphatidylinositol-4-phosphate 3-kinase C2|
           domain-containing alpha polypeptide (EC 2.7.1.154)
           (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2
           alpha) (PI3K-C2alpha)
          Length = 1685

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +2

Query: 68  KPLFCALPPLSPLHTLPNTPKFPIHPSPPC-----LDSPDLA 178
           +P++ +LP  SP  + P TP  P HP         + SPD+A
Sbjct: 183 EPIYLSLPGQSPYFSYPLTPATPFHPQGSLPIYRPVVSPDMA 224

>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)|
          Length = 512

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 200 GCGARHGKLGQESPGMAETGGWGILVCWGECGVGKEEE-GHRRGASRDRGLGGR 42
           G G   G  GQ+ P M+  GG G        G G +++ G   G  +DRG  GR
Sbjct: 167 GGGGGGGSYGQDQPSMSSGGGGG--------GYGNQDQSGGYGGGQQDRGGRGR 212

>VG53_BPML5 (Q05269) Gene 53 protein (Gp53)|
          Length = 234

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 301 WVWRLLGVGAPASEDGFHGGEAVPVVREHVR-LLPGAA 411
           WVW L       + +  H GEAV  VR  VR +L GAA
Sbjct: 34  WVWYLESPYIQKTLESLHRGEAVHYVRNQVRNILSGAA 71

>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1)|
           (Protein kinase with no lysine 4) (Protein kinase,
           lysine-deficient 4)
          Length = 1222

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 83  ALPPLSPLHTLPNTPKFPIHPS--PPCLDSPDL 175
           +LP  SPL   P+ P+ P+HP+  P C   P L
Sbjct: 865 SLPTSSPLPFSPSYPQVPLHPASLPTCPSPPPL 897

>TMG2_HUMAN (O14669) Transmembrane gamma-carboxyglutamic acid protein 2|
           precursor (Proline-rich Gla protein 2) (Proline-rich
           gamma-carboxyglutamic acid protein 2)
          Length = 202

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 38  WPCHRGRGHVKPLFCALPPLSPLHTL-PNTPKFPIHPSPPCLDSPDLA 178
           W  HRG+         + PLSPL+ L P TP  P  P PP L + + A
Sbjct: 134 WRQHRGQQPCPQEAGLISPLSPLNPLGPPTPLPPPPPPPPGLPTYEQA 181

>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1857

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +1

Query: 73   PLLCPSS-----SFPTPHSPQHTKIPHPPVSAMPGLS*PSLPCRAPQPL 204
            P L P+S     S P+PH     + P    SA PG   PS P + P PL
Sbjct: 1076 PALAPASLPARVSCPSPHPSPEARAPL--ASASPGPGDPSSPLQHPAPL 1122

>P3C2A_HUMAN (O00443) Phosphatidylinositol-4-phosphate 3-kinase C2|
           domain-containing alpha polypeptide (EC 2.7.1.154)
           (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2
           alpha) (PI3K-C2alpha)
          Length = 1686

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 68  KPLFCALPPLSPLHTLPNTPKFPIHP 145
           +P++ +LP  SP  + P TP  P HP
Sbjct: 183 EPIYLSLPGQSPYFSYPLTPATPFHP 208

>DEAD_KLEPN (P33906) Cold-shock DEAD box protein A (EC 3.6.1.-) (ATP-dependent|
           RNA helicase deaD)
          Length = 642

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 168 GESRHGGDGWMGNFGVLGRVWSGER--GGRAQKRGFT 64
           GE R GG G+ G     GR + GER  GGR + R F+
Sbjct: 574 GERREGGRGFGGERREGGRGFGGERREGGRGEGRRFS 610

>SPR2B_HUMAN (P35325) Small proline-rich protein 2B (SPR-2B)|
          Length = 72

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +1

Query: 67  EAPLLCPSSSFPTPHSPQHTKIPHPPVSAMPGLS*PSLPCRAPQP 201
           + P  CP    P P  PQ  +  +PPV+       PS PC+   P
Sbjct: 31  KCPEPCPPPKCPQPCPPQQCQQKYPPVT-------PSPPCQPKYP 68

>BAI1_HUMAN (O14514) Brain-specific angiogenesis inhibitor 1 precursor|
          Length = 1584

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 176 LGQESPGMAETGGWGILVCWGEC 108
           L Q+  G   TGGW +   WGEC
Sbjct: 251 LTQDRGGHGATGGWKLWSLWGEC 273

>AMELY_HUMAN (Q99218) Amelogenin, Y isoform precursor|
          Length = 206

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +2

Query: 89  PPLSPLHTL----PNTPKFPIHPSPPCLDSPDL 175
           PP+ P+  L    P  P FP+ P PP L  PDL
Sbjct: 159 PPVQPMQPLLPQPPLPPMFPLRPLPPIL--PDL 189

>RO52_MOUSE (Q62191) 52 kDa Ro protein (Sjoegren syndrome type A antigen)|
           (SS-A) (Ro(SS-A)) (52 kDa ribonucleoprotein autoantigen
           Ro/SS-A) (Tripartite motif protein 21)
          Length = 470

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +1

Query: 379 REHVRLLPGAASELAPPRQAVQKLLAEI 462
           RE++RLL    +ELA   QA+Q+L++E+
Sbjct: 209 REYLRLLGKKEAELAEKNQALQELISEL 236

>TRMB_PROMP (Q7V350) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)|
           (tRNA(m7G46)-methyltransferase)
          Length = 209

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 56  RGHVKPL---FCALPPLSPLHTLPNTPKFPIHPSPPC 157
           R HV PL   F  + P+ PL+ +   PK P+H    C
Sbjct: 2   RQHVNPLSKNFFEIDPIPPLNQVFENPKLPLHLDIGC 38

>TRX2_MOUSE (O08550) Trithorax homolog 2 (WW domain-binding protein 7)|
           (Fragment)
          Length = 290

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/42 (47%), Positives = 22/42 (52%)
 Frame = +1

Query: 73  PLLCPSSSFPTPHSPQHTKIPHPPVSAMPGLS*PSLPCRAPQ 198
           PL  PS+S P P SP    +P PPVS  P LS P  P    Q
Sbjct: 53  PLPPPSTSPPPPASP----LP-PPVSPPPPLSPPPYPAPEKQ 89


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,711,782
Number of Sequences: 219361
Number of extensions: 1301108
Number of successful extensions: 6004
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5948
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)