ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl27c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 7e-12
2gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare str... 80 7e-12
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
4dbj|AK072741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
5emb|AL162832.6|CNS01RI3 Human chromosome 14 DNA sequence BAC R-5... 46 0.10
6gb|M60598.1|WHTDHDPD17 T.aestivum dihydrodipicolinate synthase (... 46 0.10
7gb|AC097117.12| Rattus norvegicus 1 BAC CH230-36C10 (Children's ... 44 0.40
8gb|AC151757.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 1.6
9ref|XM_474743.1| Oryza sativa (japonica cultivar-group), predic... 42 1.6
10gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, c... 42 1.6
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
12gb|AC155252.2| Mus musculus BAC clone RP24-190H19 from chromosom... 42 1.6
13dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.6
14dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.6
15dbj|AK121055.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
16gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, compl... 42 1.6
17emb|AL606997.3|OSJN00115 Oryza sativa genomic DNA, chromosome 4,... 42 1.6
18ref|XM_522653.1| PREDICTED: Pan troglodytes similar to RIKEN cDN... 40 6.3
19gb|AC093029.4| Homo sapiens chromosome X clone XX-16186 map p11.... 40 6.3
20gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p... 40 6.3
21gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome... 40 6.3
22gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome ... 40 6.3
23gb|AC148942.1| Pan troglodytes chromosome X clone RP43-025L12 ma... 40 6.3
24ref|XM_992126.1| PREDICTED: Mus musculus hypothetical protein LO... 40 6.3
25emb|CT010454.8| Mouse DNA sequence from clone RP23-348C22 on chr... 40 6.3
26gb|AY128524.1| Stylonychia lemnae macronuclear development prote... 40 6.3
27gb|CP000243.1| Escherichia coli UTI89, complete genome 40 6.3
28emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on ch... 40 6.3
29gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genom... 40 6.3
30gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, com... 40 6.3
31gb|AF524932.1| Escherichia coli strain EC317 clone EC2165 unknow... 40 6.3
32gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, co... 40 6.3
33gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, co... 40 6.3
34gb|AC154835.3| Mus musculus BAC clone RP24-573N16 from chromosom... 40 6.3
35gb|AY134510.1| Delma australis 16S ribosomal RNA gene, partial s... 40 6.3
36emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on ch... 40 6.3
37dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
38dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
39gb|AC154331.1| Mus musculus BAC clone RP23-256F11 from chromosom... 40 6.3
40gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genom... 40 6.3
41dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
42dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
43dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
44dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
45gb|AC151847.4| Ornithorhynchus anatinus BAC clone OABb-156A1 fro... 40 6.3
46gb|AC140462.3| Mus musculus BAC clone RP23-13K8 from 14, complet... 40 6.3
47emb|AL929491.5| Mouse DNA sequence from clone RP23-82K8 on chrom... 40 6.3
48emb|AL591665.15| Mouse DNA sequence from clone RP23-333A18 on ch... 40 6.3
49emb|AL663030.12| Mouse DNA sequence from clone RP23-84C12 on chr... 40 6.3 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 107/128 (83%), Gaps = 1/128 (0%)
 Strand = Plus / Minus

                                                                            
Query: 340      gaagatgggtttcatgggggcgaagctgttcccgtcgtgcgagagcatgtgcgtctgctg 399
                ||||||||||||||||   |||||||| || || ||||| ||||| |||||||| |||||
Sbjct: 10949563 gaagatgggtttcatgtcagcgaagctctttccttcgtgtgagagtatgtgcgtgtgctg 10949504

                                                                            
Query: 400      cccggcgctgcgtccgagctcgcgccgccccgtcaagcggtac-agaagctgctcgctga 458
                 || || ||||| || |||||||| ||||| |||||||| ||| |||| ||||| || ||
Sbjct: 10949503 tccagctctgcgcccaagctcgcggcgccctgtcaagcgttacaagaaactgcttgccga 10949444

                        
Query: 459      gatattcc 466
                ||||||||
Sbjct: 10949443 gatattcc 10949436



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                                  
Query: 22       aaaaggctgctccaattggccctgccaccgaggc 55
                ||||||||||||||||||||||||||||||||||
Sbjct: 10950971 aaaaggctgctccaattggccctgccaccgaggc 10950938



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 219      gggtcgccgccgtcgccatt 238
                ||||||||||||||||||||
Sbjct: 14521765 gggtcgccgccgtcgccatt 14521784
to top
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
             from chromosome 3, complete sequence
          Length = 127348

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 107/128 (83%), Gaps = 1/128 (0%)
 Strand = Plus / Plus

                                                                         
Query: 340   gaagatgggtttcatgggggcgaagctgttcccgtcgtgcgagagcatgtgcgtctgctg 399
             ||||||||||||||||   |||||||| || || ||||| ||||| |||||||| |||||
Sbjct: 31466 gaagatgggtttcatgtcagcgaagctctttccttcgtgtgagagtatgtgcgtgtgctg 31525

                                                                         
Query: 400   cccggcgctgcgtccgagctcgcgccgccccgtcaagcggtac-agaagctgctcgctga 458
              || || ||||| || |||||||| ||||| |||||||| ||| |||| ||||| || ||
Sbjct: 31526 tccagctctgcgcccaagctcgcggcgccctgtcaagcgttacaagaaactgcttgccga 31585

                     
Query: 459   gatattcc 466
             ||||||||
Sbjct: 31586 gatattcc 31593



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                               
Query: 22    aaaaggctgctccaattggccctgccaccgaggc 55
             ||||||||||||||||||||||||||||||||||
Sbjct: 30058 aaaaggctgctccaattggccctgccaccgaggc 30091
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 107/128 (83%), Gaps = 1/128 (0%)
 Strand = Plus / Minus

                                                                            
Query: 340      gaagatgggtttcatgggggcgaagctgttcccgtcgtgcgagagcatgtgcgtctgctg 399
                ||||||||||||||||   |||||||| || || ||||| ||||| |||||||| |||||
Sbjct: 10947664 gaagatgggtttcatgtcagcgaagctctttccttcgtgtgagagtatgtgcgtgtgctg 10947605

                                                                            
Query: 400      cccggcgctgcgtccgagctcgcgccgccccgtcaagcggtac-agaagctgctcgctga 458
                 || || ||||| || |||||||| ||||| |||||||| ||| |||| ||||| || ||
Sbjct: 10947604 tccagctctgcgcccaagctcgcggcgccctgtcaagcgttacaagaaactgcttgccga 10947545

                        
Query: 459      gatattcc 466
                ||||||||
Sbjct: 10947544 gatattcc 10947537



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                                  
Query: 22       aaaaggctgctccaattggccctgccaccgaggc 55
                ||||||||||||||||||||||||||||||||||
Sbjct: 10949072 aaaaggctgctccaattggccctgccaccgaggc 10949039



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 219      gggtcgccgccgtcgccatt 238
                ||||||||||||||||||||
Sbjct: 14516736 gggtcgccgccgtcgccatt 14516755
to top
>dbj|AK072741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136H15, full
           insert sequence
          Length = 3559

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 107/128 (83%), Gaps = 1/128 (0%)
 Strand = Plus / Plus

                                                                       
Query: 340 gaagatgggtttcatgggggcgaagctgttcccgtcgtgcgagagcatgtgcgtctgctg 399
           ||||||||||||||||   |||||||| || || ||||| ||||| |||||||| |||||
Sbjct: 303 gaagatgggtttcatgtcagcgaagctctttccttcgtgtgagagtatgtgcgtgtgctg 362

                                                                       
Query: 400 cccggcgctgcgtccgagctcgcgccgccccgtcaagcggtac-agaagctgctcgctga 458
            || || ||||| || |||||||| ||||| |||||||| ||| |||| ||||| || ||
Sbjct: 363 tccagctctgcgcccaagctcgcggcgccctgtcaagcgttacaagaaactgcttgccga 422

                   
Query: 459 gatattcc 466
           ||||||||
Sbjct: 423 gatattcc 430



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 22 aaaaggctgctccaattggccctgccaccgaggc 55
          ||||||||||||||||||||||||||||||||||
Sbjct: 58 aaaaggctgctccaattggccctgccaccgaggc 91
to top
>emb|AL162832.6|CNS01RI3 Human chromosome 14 DNA sequence BAC R-544I20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 158424

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 75    tcttctgtgcccttcctcctctt 97
             |||||||||||||||||||||||
Sbjct: 61653 tcttctgtgcccttcctcctctt 61675
to top
>gb|M60598.1|WHTDHDPD17 T.aestivum dihydrodipicolinate synthase (DHDPS) mRNA, complete cds,
           clone pDA17
          Length = 1458

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                              
Query: 215 gcgcgggtcgccgccgtcgccattacccttcttccccgtcgcggcatcgcg 265
           ||||| ||||||||||||||| || || |||||||||| || | |||||||
Sbjct: 147 gcgcgcgtcgccgccgtcgccgttcccgttcttccccgccgggacatcgcg 197
to top
>gb|AC097117.12| Rattus norvegicus 1 BAC CH230-36C10 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 197926

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 89     cctcctctttccccactccacactct 114
              ||||||||||||||||||||| ||||
Sbjct: 186650 cctcctctttccccactccactctct 186625
to top
>gb|AC151757.1| Ornithorhynchus anatinus chromosome UNK clone OABb-457P24, complete
             sequence
          Length = 135835

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 84    cccttcctcctctttccccactcca 108
             ||||||||||||| |||||||||||
Sbjct: 26339 cccttcctcctctctccccactcca 26363
to top
>ref|XM_474743.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4392

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 216  cgcgggtcgccgccgtcgcca 236
            |||||||||||||||||||||
Sbjct: 3674 cgcgggtcgccgccgtcgcca 3694
to top
>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence
          Length = 175721

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 96    tttccccactccacactctccccaa 120
             ||||| |||||||||||||||||||
Sbjct: 93236 tttcctcactccacactctccccaa 93260
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 216     cgcgggtcgccgccgtcgcca 236
               |||||||||||||||||||||
Sbjct: 6159583 cgcgggtcgccgccgtcgcca 6159563
to top
>gb|AC155252.2| Mus musculus BAC clone RP24-190H19 from chromosome 14, complete
             sequence
          Length = 152012

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 77    ttctgtgcccttcctcctctttccc 101
             |||||||||||| ||||||||||||
Sbjct: 9994  ttctgtgccctttctcctctttccc 10018
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 42      cctgccaccgaggccgcggtc 62
               |||||||||||||||||||||
Sbjct: 5777925 cctgccaccgaggccgcggtc 5777945
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 411     gtccgagctcgcgccgccccg 431
               |||||||||||||||||||||
Sbjct: 8323883 gtccgagctcgcgccgccccg 8323903
to top
>dbj|AK121055.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056G06, full
            insert sequence
          Length = 5009

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 216  cgcgggtcgccgccgtcgcca 236
            |||||||||||||||||||||
Sbjct: 3970 cgcgggtcgccgccgtcgcca 3990
to top
>gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, complete sequence
          Length = 155730

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 77   ttctgtgcccttcctcctctttccc 101
            |||||||||||| ||||||||||||
Sbjct: 1472 ttctgtgccctttctcctctttccc 1448
to top
>emb|AL606997.3|OSJN00115 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0059D20,
             complete sequence
          Length = 147108

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 216   cgcgggtcgccgccgtcgcca 236
             |||||||||||||||||||||
Sbjct: 55368 cgcgggtcgccgccgtcgcca 55348
to top
>ref|XM_522653.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 4930434E21
            (LOC467255), mRNA
          Length = 2313

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  ggagctccagcctccgaaga 344
            ||||||||||||||||||||
Sbjct: 2130 ggagctccagcctccgaaga 2149
to top
>gb|AC093029.4| Homo sapiens chromosome X clone XX-16186 map p11.4, complete sequence
          Length = 115625

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   ttccccatccacccgtctcc 150
             ||||||||||||||||||||
Sbjct: 18263 ttccccatccacccgtctcc 18282
to top
>gb|AC092473.4| Homo sapiens chromosome X clone RP11-126D17 map p11.4, complete sequence
          Length = 138039

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ttccccatccacccgtctcc 150
              ||||||||||||||||||||
Sbjct: 100173 ttccccatccacccgtctcc 100192
to top
>gb|AC134537.3| Mus musculus BAC clone RP24-388M1 from chromosome 12, complete sequence
          Length = 221662

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    cccttcctcctctttccccactcc 107
             ||||||||||||||||||| ||||
Sbjct: 14953 cccttcctcctctttcccctctcc 14930
to top
>gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome 12, complete sequence
          Length = 202234

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    cccttcctcctctttccccactcc 107
             ||||||||||||||||||| ||||
Sbjct: 41025 cccttcctcctctttcccctctcc 41048
to top
>gb|AC148942.1| Pan troglodytes chromosome X clone RP43-025L12 map human ortholog p11.4
              complete sequence
          Length = 141470

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ttccccatccacccgtctcc 150
              ||||||||||||||||||||
Sbjct: 125411 ttccccatccacccgtctcc 125430
to top
>ref|XM_992126.1| PREDICTED: Mus musculus hypothetical protein LOC667740 (LOC667740),
           mRNA
          Length = 723

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 215 gcgcgggtcgccgccgtcgccatt 238
           |||||||||| |||||||||||||
Sbjct: 267 gcgcgggtcggcgccgtcgccatt 244
to top
>emb|CT010454.8| Mouse DNA sequence from clone RP23-348C22 on chromosome 13, complete
            sequence
          Length = 221281

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   cccttcctcctctttcccca 103
            ||||||||||||||||||||
Sbjct: 5853 cccttcctcctctttcccca 5834
to top
>gb|AY128524.1| Stylonychia lemnae macronuclear development protein 1 (mdp1) mRNA,
            complete cds
          Length = 2500

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   cccttcctcctctttcccca 103
            ||||||||||||||||||||
Sbjct: 2356 cccttcctcctctttcccca 2337
to top
>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     tgcgcgggtcgccgccgtcg 233
               ||||||||||||||||||||
Sbjct: 5028115 tgcgcgggtcgccgccgtcg 5028096
to top
>emb|AL390965.15| Human DNA sequence from clone RP11-640E11 on chromosome 13 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) pseudogene,
             complete sequence
          Length = 92179

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    cttcctcctctttccccact 105
             ||||||||||||||||||||
Sbjct: 83879 cttcctcctctttccccact 83860
to top
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete
              sequence
          Length = 147130

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    gggtcgccgccgtcgccatt 238
              ||||||||||||||||||||
Sbjct: 135946 gggtcgccgccgtcgccatt 135927
to top
>gb|AC100789.2| Homo sapiens chromosome X, clone RP11-907I17, complete sequence
          Length = 183453

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ttccccatccacccgtctcc 150
              ||||||||||||||||||||
Sbjct: 172613 ttccccatccacccgtctcc 172632
to top
>gb|AF524932.1| Escherichia coli strain EC317 clone EC2165 unknown sequence
          Length = 3897

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 tgcgcgggtcgccgccgtcg 233
           ||||||||||||||||||||
Sbjct: 798 tgcgcgggtcgccgccgtcg 817
to top
>gb|AC079969.5| Homo sapiens chromosome 15, clone RP11-636P14, complete sequence
          Length = 227506

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    cccactccacactctcccca 119
              ||||||||||||||||||||
Sbjct: 115318 cccactccacactctcccca 115299
to top
>gb|AC058803.5| Homo sapiens chromosome 15, clone RP11-717I24, complete sequence
          Length = 203493

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   cccactccacactctcccca 119
             ||||||||||||||||||||
Sbjct: 28125 cccactccacactctcccca 28144
to top
>gb|AC154835.3| Mus musculus BAC clone RP24-573N16 from chromosome 13, complete
             sequence
          Length = 166266

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    cccttcctcctctttcccca 103
             ||||||||||||||||||||
Sbjct: 31863 cccttcctcctctttcccca 31844
to top
>gb|AY134510.1| Delma australis 16S ribosomal RNA gene, partial sequence;
           mitochondrial
          Length = 710

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 cacactctccccaacacacc 126
           ||||||||||||||||||||
Sbjct: 112 cacactctccccaacacacc 131
to top
>emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on chromosome 2, complete
              sequence
          Length = 190652

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 84     cccttcctcctctttccccactcc 107
              ||||||||||||| ||||||||||
Sbjct: 182688 cccttcctcctctctccccactcc 182665
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 85       ccttcctcctctttccccac 104
                ||||||||||||||||||||
Sbjct: 25015483 ccttcctcctctttccccac 25015502
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 240      cccttcttccccgtcgcggc 259
                ||||||||||||||||||||
Sbjct: 11162930 cccttcttccccgtcgcggc 11162911
to top
>gb|AC154331.1| Mus musculus BAC clone RP23-256F11 from chromosome 13, complete
             sequence
          Length = 175414

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    cccttcctcctctttcccca 103
             ||||||||||||||||||||
Sbjct: 43889 cccttcctcctctttcccca 43908
to top
>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
             sequence
          Length = 135594

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gggtcgccgccgtcgccatt 238
             ||||||||||||||||||||
Sbjct: 19620 gggtcgccgccgtcgccatt 19601
to top
>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0042E12
          Length = 164688

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   cccttcttccccgtcgcggc 259
             ||||||||||||||||||||
Sbjct: 37752 cccttcttccccgtcgcggc 37733
to top
>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1217_C01
          Length = 100180

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 240   cccttcttccccgtcgcggc 259
             ||||||||||||||||||||
Sbjct: 92836 cccttcttccccgtcgcggc 92817
to top
>dbj|AP005245.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0025J22
          Length = 175355

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    ccttcctcctctttccccac 104
             ||||||||||||||||||||
Sbjct: 71599 ccttcctcctctttccccac 71618
to top
>dbj|AP003883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1134_H03
          Length = 135914

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     ccttcctcctctttccccac 104
              ||||||||||||||||||||
Sbjct: 117198 ccttcctcctctttccccac 117217
to top
>gb|AC151847.4| Ornithorhynchus anatinus BAC clone OABb-156A1 from chromosome unknown,
             complete sequence
          Length = 120614

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    cccttcctcctctttccccactcc 107
             ||||||||||||| ||||||||||
Sbjct: 43929 cccttcctcctctctccccactcc 43906
to top
>gb|AC140462.3| Mus musculus BAC clone RP23-13K8 from 14, complete sequence
          Length = 199933

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    tgcccttcctcctctttccc 101
             ||||||||||||||||||||
Sbjct: 60484 tgcccttcctcctctttccc 60503
to top
>emb|AL929491.5| Mouse DNA sequence from clone RP23-82K8 on chromosome 4, complete
            sequence
          Length = 39332

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   aggagaaaaggctgctccaa 36
            ||||||||||||||||||||
Sbjct: 9519 aggagaaaaggctgctccaa 9538
to top
>emb|AL591665.15| Mouse DNA sequence from clone RP23-333A18 on chromosome 2, complete
              sequence
          Length = 181419

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 306    ttggaggttacttggagttg 325
              ||||||||||||||||||||
Sbjct: 153910 ttggaggttacttggagttg 153929
to top
>emb|AL663030.12| Mouse DNA sequence from clone RP23-84C12 on chromosome 11, complete
             sequence
          Length = 212085

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 215   gcgcgggtcgccgccgtcgccatt 238
             |||||||||| |||||||||||||
Sbjct: 37480 gcgcgggtcggcgccgtcgccatt 37503


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,005,950
Number of Sequences: 3902068
Number of extensions: 4005950
Number of successful extensions: 94978
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94405
Number of HSP's gapped (non-prelim): 573
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top